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Conserved domains on  [gi|484354481|gb|AGK44053|]
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RPB2, partial [Fusarium oligoseptatum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ricin_B_lectin super family cl47023
Ricin-type beta-trefoil lectin domain;
13-272 4.76e-66

Ricin-type beta-trefoil lectin domain;


The actual alignment was detected with superfamily member PRK08565:

Pssm-ID: 481363 [Multi-domain]  Cd Length: 1103  Bit Score: 222.14  E-value: 4.76e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481   13 RQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVWCGVHS 92
Cdd:PRK08565  435 RDLHGTQWGRICPFETPEGPNCGLVKNLALMAQISVGVDEEEVEEILYELGVVPVEEAREEEYISWSRVYLNGRLIGYHP 514

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481   93 DPKHLVSQVLDTRRKSYLQYEVSlVRDIRDREFK---VFSDAGRVMRPVFTVQqeddhesgiaKGALVLTKDLVNKLAKe 169
Cdd:PRK08565  515 DGEELAEKIRELRRSGKISDEVN-VAYIETGEINevyVNCDSGRVRRPLIVVE----------NGKPKLTREHVEKLKK- 582

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481  170 qaeppedpsQKIGWEGLIRAGTIEYLDAEEEETAMICMTPEDLdlyrmqkagyvvdedntddpnrrlktktnptTHMYTH 249
Cdd:PRK08565  583 ---------GELTFDDLVKMGVIEYLDAEEEENAYVALDPEDL-------------------------------TPEHTH 622

                         250       260
                  ....*....|....*....|...
gi 484354481  250 CEIHPSMILGICASIIPFPDHNQ 272
Cdd:PRK08565  623 LEIWPPAILGITASIIPYPEHNQ 645
 
Name Accession Description Interval E-value
PRK08565 PRK08565
DNA-directed RNA polymerase subunit B; Provisional
 13-272 4.76e-66

DNA-directed RNA polymerase subunit B; Provisional


Pssm-ID: 236291 [Multi-domain]  Cd Length: 1103  Bit Score: 222.14  E-value: 4.76e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481   13 RQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVWCGVHS 92
Cdd:PRK08565  435 RDLHGTQWGRICPFETPEGPNCGLVKNLALMAQISVGVDEEEVEEILYELGVVPVEEAREEEYISWSRVYLNGRLIGYHP 514

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481   93 DPKHLVSQVLDTRRKSYLQYEVSlVRDIRDREFK---VFSDAGRVMRPVFTVQqeddhesgiaKGALVLTKDLVNKLAKe 169
Cdd:PRK08565  515 DGEELAEKIRELRRSGKISDEVN-VAYIETGEINevyVNCDSGRVRRPLIVVE----------NGKPKLTREHVEKLKK- 582

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481  170 qaeppedpsQKIGWEGLIRAGTIEYLDAEEEETAMICMTPEDLdlyrmqkagyvvdedntddpnrrlktktnptTHMYTH 249
Cdd:PRK08565  583 ---------GELTFDDLVKMGVIEYLDAEEEENAYVALDPEDL-------------------------------TPEHTH 622

                         250       260
                  ....*....|....*....|...
gi 484354481  250 CEIHPSMILGICASIIPFPDHNQ 272
Cdd:PRK08565  623 LEIWPPAILGITASIIPYPEHNQ 645
RNA_pol_Rpb2_4 pfam04566
RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of ...
 81-142 2.71e-26

RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain.


Pssm-ID: 428012 [Multi-domain]  Cd Length: 62  Bit Score: 97.44  E-value: 2.71e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 484354481   81 IFVNGVWCGVHSDPKHLVSQVLDTRRKSYLQYEVSLVRDIRDREFKVFSDAGRVMRPVFTVQ 142
Cdd:pfam04566   1 VFLNGNLIGVHRDPEELVETLRKLRRSGKISEEVSIVRDIREKEVRINTDGGRVCRPLIIVE 62
RNA_pol_B_RPB2 cd00653
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ...
 2-272 7.61e-23

RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.


Pssm-ID: 238353 [Multi-domain]  Cd Length: 866  Bit Score: 97.64  E-value: 7.61e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481   2 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSvgspsepliefminrgmevveeyeplryphatki 81
Cdd:cd00653  336 GLFRERKGFEVRDLHPSHWGRICPIETPEGENCGLVKNLALMARIS---------------------------------- 381

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481  82 fvngvwcgvhsdpkhlvsqvldtrrksylqyevslvrdirdrefkvfsdaGRVMRPVFTVQQEddhesgiakgalvltkd 161
Cdd:cd00653  382 --------------------------------------------------GRIERPYRIVEKE----------------- 394

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481 162 lvnklakeqaeppedpsqkigwegliragtieyldaeeeetamicmtpedldlyrmqkagyvvdedntddpnrrlktktn 241
Cdd:cd00653      --------------------------------------------------------------------------------

                        250       260       270
                 ....*....|....*....|....*....|.
gi 484354481 242 ptthmYTHCEIHPSMILGICASIIPFPDHNQ 272
Cdd:cd00653  395 -----VTHIEISPSQILSVAASLIPFPEHNQ 420
RpoB COG0085
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ...
 13-272 1.85e-19

DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 439855 [Multi-domain]  Cd Length: 1001  Bit Score: 87.86  E-value: 1.85e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481   13 RQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSvgspsepliefminrgmevveEYeplryphatkifvngvwcgvhs 92
Cdd:COG0085   408 RDVHPSHYGRMCPIETPEGPNIGLIGSLALYARVN---------------------EY---------------------- 444

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481   93 dpkhlvsqvldtrrksylqyevslvrdirdrefkvfsdaGRVMRPVFTVqqeddhESGiakgalVLTKDlvnklakeqae 172
Cdd:COG0085   445 ---------------------------------------GFIETPYRKV------ENG------KVTDE----------- 462

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481  173 ppedpsqkigwegliragtIEYLDAEEEETAMICMTPEDLDlyrmqKAGYVVDEdntDDPNRRLKTKTNPTTHMYTHCEI 252
Cdd:COG0085   463 -------------------IEYLTADEEENYYIAQANAPLD-----EDGNFLEE---RVLVRYRGEEVLVPPEEVDYMDV 515

                         250       260
                  ....*....|....*....|
gi 484354481  253 HPSMILGICASIIPFPDHNQ 272
Cdd:COG0085   516 SPKQIVSVATSLIPFLEHDD 535
 
Name Accession Description Interval E-value
PRK08565 PRK08565
DNA-directed RNA polymerase subunit B; Provisional
 13-272 4.76e-66

DNA-directed RNA polymerase subunit B; Provisional


Pssm-ID: 236291 [Multi-domain]  Cd Length: 1103  Bit Score: 222.14  E-value: 4.76e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481   13 RQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVWCGVHS 92
Cdd:PRK08565  435 RDLHGTQWGRICPFETPEGPNCGLVKNLALMAQISVGVDEEEVEEILYELGVVPVEEAREEEYISWSRVYLNGRLIGYHP 514

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481   93 DPKHLVSQVLDTRRKSYLQYEVSlVRDIRDREFK---VFSDAGRVMRPVFTVQqeddhesgiaKGALVLTKDLVNKLAKe 169
Cdd:PRK08565  515 DGEELAEKIRELRRSGKISDEVN-VAYIETGEINevyVNCDSGRVRRPLIVVE----------NGKPKLTREHVEKLKK- 582

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481  170 qaeppedpsQKIGWEGLIRAGTIEYLDAEEEETAMICMTPEDLdlyrmqkagyvvdedntddpnrrlktktnptTHMYTH 249
Cdd:PRK08565  583 ---------GELTFDDLVKMGVIEYLDAEEEENAYVALDPEDL-------------------------------TPEHTH 622

                         250       260
                  ....*....|....*....|...
gi 484354481  250 CEIHPSMILGICASIIPFPDHNQ 272
Cdd:PRK08565  623 LEIWPPAILGITASIIPYPEHNQ 645
PRK07225 PRK07225
DNA-directed RNA polymerase subunit B'; Validated
 79-272 8.10e-34

DNA-directed RNA polymerase subunit B'; Validated


Pssm-ID: 235972 [Multi-domain]  Cd Length: 605  Bit Score: 128.93  E-value: 8.10e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481  79 TKIFVNGVWCGVHSDPKHLVSQVLDTRRKSYLQYEVSLVRDIRDREFKVFSDAGRVMRPVFTVQqeddhesgiaKGALVL 158
Cdd:PRK07225   5 AKVYVNGKLIGTHDDPEELVEEIREARRSGEISEEVNVSYKEETNEVIINTDAGRARRPLIVVE----------NGEPLL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481 159 TKDLVNKLAKeqaeppedpsQKIGWEGLIRAGTIEYLDAEEEETAMICMTPEDLdlyrmqkagyvvdednTDDpnrrlkt 238
Cdd:PRK07225  75 TEEHIEKLKN----------GELTFDDLVKQGVIEYLDAEEEENAYIAVYEEDL----------------TEE------- 121

                        170       180       190
                 ....*....|....*....|....*....|....
gi 484354481 239 ktnptthmYTHCEIHPSMILGICASIIPFPDHNQ 272
Cdd:PRK07225 122 --------HTHLEIDPSLILGIGAGMIPYPEHNA 147
RNA_pol_Rpb2_4 pfam04566
RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of ...
 81-142 2.71e-26

RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain.


Pssm-ID: 428012 [Multi-domain]  Cd Length: 62  Bit Score: 97.44  E-value: 2.71e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 484354481   81 IFVNGVWCGVHSDPKHLVSQVLDTRRKSYLQYEVSLVRDIRDREFKVFSDAGRVMRPVFTVQ 142
Cdd:pfam04566   1 VFLNGNLIGVHRDPEELVETLRKLRRSGKISEEVSIVRDIREKEVRINTDGGRVCRPLIIVE 62
RNA_pol_Rpb2_5 pfam04567
RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of ...
 183-254 3.74e-23

RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 5, is also known as the external 2 domain.


Pssm-ID: 428013 [Multi-domain]  Cd Length: 53  Bit Score: 89.14  E-value: 3.74e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 484354481  183 WEGLIRAGTIEYLDAEEEETAMICMTPEDLD-LYRMQKAGyvvdedntddpnrrlktktnPTTHMYTHCEIHP 254
Cdd:pfam04567   1 WSDLLREGVIEYLDAEEEETSMIAMTPEDLEeSSREEREG--------------------PYAHTYTHCEIHP 53
RNA_pol_B_RPB2 cd00653
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ...
 2-272 7.61e-23

RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.


Pssm-ID: 238353 [Multi-domain]  Cd Length: 866  Bit Score: 97.64  E-value: 7.61e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481   2 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSvgspsepliefminrgmevveeyeplryphatki 81
Cdd:cd00653  336 GLFRERKGFEVRDLHPSHWGRICPIETPEGENCGLVKNLALMARIS---------------------------------- 381

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481  82 fvngvwcgvhsdpkhlvsqvldtrrksylqyevslvrdirdrefkvfsdaGRVMRPVFTVQQEddhesgiakgalvltkd 161
Cdd:cd00653  382 --------------------------------------------------GRIERPYRIVEKE----------------- 394

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481 162 lvnklakeqaeppedpsqkigwegliragtieyldaeeeetamicmtpedldlyrmqkagyvvdedntddpnrrlktktn 241
Cdd:cd00653      --------------------------------------------------------------------------------

                        250       260       270
                 ....*....|....*....|....*....|.
gi 484354481 242 ptthmYTHCEIHPSMILGICASIIPFPDHNQ 272
Cdd:cd00653  395 -----VTHIEISPSQILSVAASLIPFPEHNQ 420
RNA_pol_Rpb2_3 pfam04565
RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of ...
 3-45 2.40e-21

RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is proximal to catalytic site.


Pssm-ID: 428011 [Multi-domain]  Cd Length: 67  Bit Score: 84.89  E-value: 2.40e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 484354481    3 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCY 45
Cdd:pfam04565  25 LFREMKTTEVRDLHPSHWGRICPVETPEGPNCGLVKHLALYAR 67
RpoB COG0085
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ...
 13-272 1.85e-19

DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 439855 [Multi-domain]  Cd Length: 1001  Bit Score: 87.86  E-value: 1.85e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481   13 RQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSvgspsepliefminrgmevveEYeplryphatkifvngvwcgvhs 92
Cdd:COG0085   408 RDVHPSHYGRMCPIETPEGPNIGLIGSLALYARVN---------------------EY---------------------- 444

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481   93 dpkhlvsqvldtrrksylqyevslvrdirdrefkvfsdaGRVMRPVFTVqqeddhESGiakgalVLTKDlvnklakeqae 172
Cdd:COG0085   445 ---------------------------------------GFIETPYRKV------ENG------KVTDE----------- 462

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481  173 ppedpsqkigwegliragtIEYLDAEEEETAMICMTPEDLDlyrmqKAGYVVDEdntDDPNRRLKTKTNPTTHMYTHCEI 252
Cdd:COG0085   463 -------------------IEYLTADEEENYYIAQANAPLD-----EDGNFLEE---RVLVRYRGEEVLVPPEEVDYMDV 515

                         250       260
                  ....*....|....*....|
gi 484354481  253 HPSMILGICASIIPFPDHNQ 272
Cdd:COG0085   516 SPKQIVSVATSLIPFLEHDD 535
PRK09606 PRK09606
DNA-directed RNA polymerase subunit B''; Validated
 13-71 5.89e-16

DNA-directed RNA polymerase subunit B''; Validated


Pssm-ID: 236587 [Multi-domain]  Cd Length: 494  Bit Score: 77.30  E-value: 5.89e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 484354481  13 RQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMinRGMEVVEEYE 71
Cdd:PRK09606 438 RDLHPTQWGRICPSETPEGPNCGLVKNFAQMVEISTGEDEEEVKEIL--KELGVEPERG 494
PRK09603 PRK09603
DNA-directed RNA polymerase subunit beta/beta';
13-105 9.48e-06

DNA-directed RNA polymerase subunit beta/beta';


Pssm-ID: 181983 [Multi-domain]  Cd Length: 2890  Bit Score: 46.84  E-value: 9.48e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484354481   13 RQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVS----VGSPSEPLIEFMINRgmEVV-----EEYEPLRYPHATKIFV 83
Cdd:PRK09603  562 RDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNdlgfIEAPYKKVVDGKVVG--ETIyltaiQEDSHIIAPASTPIDE 639

                          90       100
                  ....*....|....*....|..
gi 484354481   84 NGvwcgvhsdpkHLVSQVLDTR 105
Cdd:PRK09603  640 EG----------NILGDLIETR 651
PRK14844 PRK14844
DNA-directed RNA polymerase subunit beta/beta';
13-65 2.80e-05

DNA-directed RNA polymerase subunit beta/beta';


Pssm-ID: 173305 [Multi-domain]  Cd Length: 2836  Bit Score: 45.38  E-value: 2.80e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 484354481   13 RQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVS----VGSPSEPLIEFMINRGME 65
Cdd:PRK14844  569 RDVHPTHYGRICPIETPEGQNIGLINSLAIYARINkygfIESPYRKVVNRVVTDQIE 625
rpoB PRK00405
DNA-directed RNA polymerase subunit beta; Reviewed
 13-41 7.77e-05

DNA-directed RNA polymerase subunit beta; Reviewed


Pssm-ID: 234749 [Multi-domain]  Cd Length: 1112  Bit Score: 43.94  E-value: 7.77e-05
                          10        20
                  ....*....|....*....|....*....
gi 484354481   13 RQLHNTHWGLVCPAETPEGQACGLVKNLS 41
Cdd:PRK00405  469 RDVHPTHYGRICPIETPEGPNIGLINSLA 497
rpoB CHL00207
RNA polymerase beta subunit; Provisional
 13-41 1.65e-04

RNA polymerase beta subunit; Provisional


Pssm-ID: 214397 [Multi-domain]  Cd Length: 1077  Bit Score: 42.77  E-value: 1.65e-04
                          10        20
                  ....*....|....*....|....*....
gi 484354481   13 RQLHNTHWGLVCPAETPEGQACGLVKNLS 41
Cdd:CHL00207  403 RDIHPSHYGRICPIETPEGPNCGLIGSLA 431
rpoB CHL00001
RNA polymerase beta subunit
 13-50 3.38e-03

RNA polymerase beta subunit


Pssm-ID: 214330 [Multi-domain]  Cd Length: 1070  Bit Score: 38.73  E-value: 3.38e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 484354481   13 RQLHNTHWGLVCPAETPEGQACGLVKnlSLMCYVSVGS 50
Cdd:CHL00001  411 RDIHPSHYGRICPIDTSEGINAGLIG--SLAIHARIGH 446
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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