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Conserved domains on  [gi|1043199187|gb|AHJ74555|]
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hypothetical protein C813_07250 [Kosakonia sacchari SP1]

Protein Classification

LysB family phage lysis regulatory protein( domain architecture ID 10022485)

LysB family phage lysis regulatory protein similar to Escherichia virus P2 probable spanin, inner membrane subunit (also known as i-spanin or LysB), a component of the spanin complex that disrupts the host outer membrane and participates in cell lysis during virus exit

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
phage_LysB TIGR03495
phage lysis regulatory protein, LysB family; Members of this protein family are phage lysis ...
1-130 2.62e-48

phage lysis regulatory protein, LysB family; Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.


:

Pssm-ID: 274606  Cd Length: 135  Bit Score: 151.40  E-value: 2.62e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1043199187   1 MVLVLLAALGWQSWRLNNASHTIETQGATLASQAQELAKKNSQLIGLSILTETNSREQTRLYAAAEQTTALLRSRQHRIE 80
Cdd:TIGR03495   6 LLVLLVAGLGWQSQRLRNARADLERANRALKAQQAELAMKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIE 85
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1043199187  81 ELKRENEDLRRWADTPLPADIIRLRERPALAGGAAYREWLSGSDAVPAGK 130
Cdd:TIGR03495  86 RLKRENEDLRRWADTPLPDDVIRLRQRPALTGAADYRQWLSEGDALPDAG 135
 
Name Accession Description Interval E-value
phage_LysB TIGR03495
phage lysis regulatory protein, LysB family; Members of this protein family are phage lysis ...
1-130 2.62e-48

phage lysis regulatory protein, LysB family; Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.


Pssm-ID: 274606  Cd Length: 135  Bit Score: 151.40  E-value: 2.62e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1043199187   1 MVLVLLAALGWQSWRLNNASHTIETQGATLASQAQELAKKNSQLIGLSILTETNSREQTRLYAAAEQTTALLRSRQHRIE 80
Cdd:TIGR03495   6 LLVLLVAGLGWQSQRLRNARADLERANRALKAQQAELAMKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIE 85
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1043199187  81 ELKRENEDLRRWADTPLPADIIRLRERPALAGGAAYREWLSGSDAVPAGK 130
Cdd:TIGR03495  86 RLKRENEDLRRWADTPLPDDVIRLRQRPALTGAADYRQWLSEGDALPDAG 135
 
Name Accession Description Interval E-value
phage_LysB TIGR03495
phage lysis regulatory protein, LysB family; Members of this protein family are phage lysis ...
1-130 2.62e-48

phage lysis regulatory protein, LysB family; Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.


Pssm-ID: 274606  Cd Length: 135  Bit Score: 151.40  E-value: 2.62e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1043199187   1 MVLVLLAALGWQSWRLNNASHTIETQGATLASQAQELAKKNSQLIGLSILTETNSREQTRLYAAAEQTTALLRSRQHRIE 80
Cdd:TIGR03495   6 LLVLLVAGLGWQSQRLRNARADLERANRALKAQQAELAMKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIE 85
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1043199187  81 ELKRENEDLRRWADTPLPADIIRLRERPALAGGAAYREWLSGSDAVPAGK 130
Cdd:TIGR03495  86 RLKRENEDLRRWADTPLPDDVIRLRQRPALTGAADYRQWLSEGDALPDAG 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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