|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-232 |
1.38e-160 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 449.09 E-value: 1.38e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYYT 80
Cdd:MTH00100 146 ITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYT 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 81 IKDILGLFVMILALLSLVLFSPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIP 160
Cdd:MTH00100 226 IKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIP 305
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 728050188 161 LLHTSKQRSMAFRPLSQCSFWLLVADLLTLTWIGGQPVEHPYIIIGQLASILYFLIIVVIMPLAGLVENHLL 232
Cdd:MTH00100 306 LLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-228 |
3.55e-65 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 206.95 E-value: 3.55e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFH-FLLPFIISALVMVHLLFLHETGSNNPTGI----PSDMDMIPF 75
Cdd:COG1290 157 ITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPF 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 76 HPYYTIKDILGLFVMILALLSLVLFSPDllGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALVLSI 153
Cdd:COG1290 237 HPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAI 314
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 728050188 154 LILIIIPLLHTSKQRSMAFRPLSQCSFWLLVADLLTLTWIGGQPVehPYIIIGQLASILYFLIIVVIMPLAGLVE 228
Cdd:COG1290 315 LVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
62-209 |
2.27e-50 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 160.89 E-value: 2.27e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 62 NPTGIPSDMDMIPFHPYYTIKDILGLFVMILALLSLVLFSPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPN 141
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 728050188 142 KLGGVLALVLSILILIIIPLLHTSKQRSMaFRPLSQCSFWLLVADLLTLTWIGGQPVEHPYIIIGQLA 209
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
113-213 |
3.49e-39 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 130.68 E-value: 3.49e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 113 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIPLLHTSKQRSMAFRPLSQCSFWLLVADLLTLTW 192
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 728050188 193 IGGQPVEHPYIIIGQLASILY 213
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
84-146 |
7.14e-07 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 47.48 E-value: 7.14e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 728050188 84 ILGLFVMILALLSLvlfSPDLLGDPdnyspANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 146
Cdd:TIGR01156 44 ILGTIACVVGLAVL---DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGV 98
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-232 |
1.38e-160 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 449.09 E-value: 1.38e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYYT 80
Cdd:MTH00100 146 ITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYT 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 81 IKDILGLFVMILALLSLVLFSPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIP 160
Cdd:MTH00100 226 IKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIP 305
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 728050188 161 LLHTSKQRSMAFRPLSQCSFWLLVADLLTLTWIGGQPVEHPYIIIGQLASILYFLIIVVIMPLAGLVENHLL 232
Cdd:MTH00100 306 LLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-232 |
1.95e-140 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 398.12 E-value: 1.95e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYYT 80
Cdd:MTH00119 147 ITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFS 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 81 IKDILGLFVMILALLSLVLFSPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIP 160
Cdd:MTH00119 227 YKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMP 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 728050188 161 LLHTSKQRSMAFRPLSQCSFWLLVADLLTLTWIGGQPVEHPYIIIGQLASILYFLIIVVIMPLAGLVENHLL 232
Cdd:MTH00119 307 FLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKML 378
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-232 |
6.47e-137 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 389.01 E-value: 6.47e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYYT 80
Cdd:MTH00131 146 ITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFS 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 81 IKDILGLFVMILALLSLVLFSPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIP 160
Cdd:MTH00131 226 YKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVP 305
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 728050188 161 LLHTSKQRSMAFRPLSQCSFWLLVADLLTLTWIGGQPVEHPYIIIGQLASILYFLIIVVIMPLAGLVENHLL 232
Cdd:MTH00131 306 ILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKAL 377
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-232 |
2.60e-130 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 372.48 E-value: 2.60e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYYT 80
Cdd:MTH00074 147 ITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFS 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 81 IKDILGLFVMILALLSLVLFSPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIP 160
Cdd:MTH00074 227 YKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIP 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 728050188 161 LLHTSKQRSMAFRPLSQCSFWLLVADLLTLTWIGGQPVEHPYIIIGQLASILYFLIIVVIMPLAGLVENHLL 232
Cdd:MTH00074 307 MLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLL 378
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-223 |
2.25e-123 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 354.22 E-value: 2.25e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYYT 80
Cdd:MTH00191 143 ITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFS 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 81 IKDILGLFVMILALLSLVLFSPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIP 160
Cdd:MTH00191 223 YKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLP 302
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 728050188 161 LLHTSKQRSMAFRPLSQCSFWLLVADLLTLTWIGGQPVEHPYIIIGQLASILYFLIIVVIMPL 223
Cdd:MTH00191 303 LLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-232 |
3.23e-116 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 336.68 E-value: 3.23e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYYT 80
Cdd:MTH00034 146 ITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFT 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 81 IKDILGLFVMILALLSLVLFSPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIP 160
Cdd:MTH00034 226 TKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVP 305
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 728050188 161 LLHTSKQRSMAFRPLSQCSFWLLVADLLTLTWIGGQPVEHPYIIIGQLASILYFLIIVVIMPLAGLVENHLL 232
Cdd:MTH00034 306 ILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-221 |
2.05e-115 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 333.67 E-value: 2.05e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYYT 80
Cdd:MTH00156 136 ITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFT 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 81 IKDILGLFVMILALLSLVLFSPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIP 160
Cdd:MTH00156 216 FKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILP 295
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 728050188 161 LLHTSKQRSMAFRPLSQCSFWLLVADLLTLTWIGGQPVEHPYIIIGQLASILYFLIIVVIM 221
Cdd:MTH00156 296 FTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-232 |
2.42e-111 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 324.17 E-value: 2.42e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYYT 80
Cdd:MTH00145 147 ITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYT 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 81 IKDILGLFVMILALLSLVLFSPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIP 160
Cdd:MTH00145 227 IKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLP 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 728050188 161 LLHTSKQRSMAFRPLSQCSFWLLVADLLTLTWIGGQPVEHPYIIIGQLASILYFLIIVVImPLAGLVENHLL 232
Cdd:MTH00145 307 LLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-232 |
1.02e-107 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 315.08 E-value: 1.02e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYYT 80
Cdd:MTH00016 147 ITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYT 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 81 IKDILGLFVMILALLSLVLFSPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIP 160
Cdd:MTH00016 227 SKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLP 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 728050188 161 LLHTSKQRSMAFRPLSQCSFWLLVADLLTLTWIGGQPVEHPYIIIGQLASILYFlIIVVIMPLAGLVENHLL 232
Cdd:MTH00016 307 FIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYF-FYFMINPLLMKLWDKLL 377
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-232 |
4.71e-100 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 295.46 E-value: 4.71e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYYT 80
Cdd:MTH00053 147 ITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYV 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 81 IKDILGLFVMILALLSLVLFSPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIP 160
Cdd:MTH00053 227 LKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLP 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 728050188 161 LLHTSKQRSMAFRPLSQCSFWLLVADLLTLTWIGGQPVEHPYIIIGQLASILYFLIIVVIMPLAGLVENHLL 232
Cdd:MTH00053 307 YLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLL 378
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-232 |
3.65e-98 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 290.83 E-value: 3.65e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYYT 80
Cdd:MTH00022 145 ITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYT 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 81 IKDILGLFVMILALLSLVLFSPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIP 160
Cdd:MTH00022 225 SKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLP 304
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 728050188 161 LLHTSKQRSMAFRPLSQCSFWLLVADLLTLTWIGGQPVEHPYIIIGQLASILYFLIIVVIMPLAGLVENHLL 232
Cdd:MTH00022 305 LLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLL 376
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-232 |
3.37e-90 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 270.64 E-value: 3.37e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYYT 80
Cdd:MTH00224 147 ITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYS 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 81 IKDILGLFVMILALLSLVLFSPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIP 160
Cdd:MTH00224 227 IKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILP 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 728050188 161 LLHTSKQRSMAFRPLSQCSFWLLVADLLTLTWIGGQPVEHPYIIIGQLASILYFlIIVVIMPLAGLVENHLL 232
Cdd:MTH00224 307 LTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYF-SYFIISPAISKLWDDLL 377
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-229 |
4.62e-67 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 211.33 E-value: 4.62e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYYT 80
Cdd:MTH00033 143 ITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFT 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 81 IKDILGlFVMILALLSLVLFSP---DLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILI 157
Cdd:MTH00033 223 IKDILG-FLILFGVFVIIGIEPrieTLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLL 301
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 728050188 158 IIPLLHTSKQRSMAFRPLSQCSFWLLVADLLTLTWIGGQPV-EHPYIIIGQLASILYFLIIVVIMPLAGLVEN 229
Cdd:MTH00033 302 LMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-228 |
3.55e-65 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 206.95 E-value: 3.55e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFH-FLLPFIISALVMVHLLFLHETGSNNPTGI----PSDMDMIPF 75
Cdd:COG1290 157 ITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPF 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 76 HPYYTIKDILGLFVMILALLSLVLFSPDllGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALVLSI 153
Cdd:COG1290 237 HPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAI 314
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 728050188 154 LILIIIPLLHTSKQRSMAFRPLSQCSFWLLVADLLTLTWIGGQPVehPYIIIGQLASILYFLIIVVIMPLAGLVE 228
Cdd:COG1290 315 LVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-221 |
2.19e-60 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 193.23 E-value: 2.19e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYYT 80
Cdd:MTH00086 135 ITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYW 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 81 IKDILGLFvMILALLSLVLFSPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIP 160
Cdd:MTH00086 215 NKDAYNII-FWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFI 293
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 728050188 161 LLHTSkqrSMAFRPLSQCSFWLLVADLLTLTWIGGQPVEHPYIIIGQLASILYFLIIVVIM 221
Cdd:MTH00086 294 FVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
62-209 |
2.27e-50 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 160.89 E-value: 2.27e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 62 NPTGIPSDMDMIPFHPYYTIKDILGLFVMILALLSLVLFSPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPN 141
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 728050188 142 KLGGVLALVLSILILIIIPLLHTSKQRSMaFRPLSQCSFWLLVADLLTLTWIGGQPVEHPYIIIGQLA 209
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-219 |
2.86e-48 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 162.07 E-value: 2.86e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHLLFLHETGSNNPTGIPSDM-DMIPFHPYY 79
Cdd:MTH00046 137 LTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYF 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 80 TIKDILGLFVMILALLSLVLFSPDLLGDPDNYSPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIi 159
Cdd:MTH00046 217 TVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFFLWV- 295
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 160 pllhTSKQRSMAFRPLSQCSFWLLVADLLTLTWIGGQPVEHPYIIIGQLASILYFLIIVV 219
Cdd:MTH00046 296 ----PTFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
113-213 |
3.49e-39 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 130.68 E-value: 3.49e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 113 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILIIIPLLHTSKQRSMAFRPLSQCSFWLLVADLLTLTW 192
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 728050188 193 IGGQPVEHPYIIIGQLASILY 213
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-61 |
1.27e-24 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 96.28 E-value: 1.27e-24
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHLLFLHETGSN 61
Cdd:cd00284 140 ITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-108 |
1.44e-24 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 95.39 E-value: 1.44e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHF-LLPFIISALVMVHLLFLHETGSNNPTGIPSDMDMIPFHPYY 79
Cdd:pfam13631 61 GLGILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVF 140
|
90 100
....*....|....*....|....*....
gi 728050188 80 TIKDILGLFVMILALLSLVLFSPDLLGDP 108
Cdd:pfam13631 141 AVKMLLFFLITVALLIGLAQINPIWLGGP 169
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-59 |
2.01e-22 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 90.52 E-value: 2.01e-22
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFHFLLPFIISALVMVHLLFLHETG 59
Cdd:pfam00033 131 ITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| petB |
CHL00070 |
cytochrome b6 |
1-63 |
1.98e-08 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 52.80 E-value: 1.98e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 728050188 1 ITNLLSAIPYIGTNLVEWIWGGFSVDKATLTRFFAFH-FLLPFIISALVMVHLLFLHETGSNNP 63
Cdd:CHL00070 151 VTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGP 214
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
84-146 |
2.05e-08 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 52.10 E-value: 2.05e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 728050188 84 ILGLFVMILALLSLvlfSPDLLGDPdnyspANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 146
Cdd:COG5679 45 ILGTIALCIGLAVL---DPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGI 99
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
84-146 |
5.45e-08 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 50.77 E-value: 5.45e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 728050188 84 ILGLFVMILALLSLvlfSPDLLGDPdnyspANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 146
Cdd:CHL00058 44 ILGTIACNVGLAVL---EPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGV 98
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
6-63 |
1.12e-07 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 50.87 E-value: 1.12e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 728050188 6 SAIPYIGTNLVEWIWGGFSVDKATLTRFFAFH-FLLPFIISALVMVHLLFLHETGSNNP 63
Cdd:PRK03735 164 EAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGP 222
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
84-146 |
7.14e-07 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 47.48 E-value: 7.14e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 728050188 84 ILGLFVMILALLSLvlfSPDLLGDPdnyspANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 146
Cdd:TIGR01156 44 ILGTIACVVGLAVL---DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGV 98
|
|
| |
