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Conserved domains on  [gi|761641643|gb|AJP64201|]
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egg receptor for bindin, partial [Strongylocentrotus purpuratus]

Protein Classification

CUB domain-containing protein( domain architecture ID 1781)

CUB (complement C1r/C1s, Uegf, Bmp1) domain-containing protein

PubMed:  8510165

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CUB super family cl00049
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 1-61 7.24e-03

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


The actual alignment was detected with superfamily member cd00041:

Pssm-ID: 412131 [Multi-domain]  Cd Length: 113  Bit Score: 32.00  E-value: 7.24e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 761641643   1 CDVSITAGNSQ-ITFPMSNDYYLYNDECTLTITNENGCM-MLFFTSLDIDEglGDTCYNDYLM 61
Cdd:cd00041    1 CGGTLTASTSGtISSPNYPNNYPNNLNCVWTIEAPPGYRiRLTFEDFDLES--SPNCSYDYLE 61
 
Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 1-61 7.24e-03

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 32.00  E-value: 7.24e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 761641643   1 CDVSITAGNSQ-ITFPMSNDYYLYNDECTLTITNENGCM-MLFFTSLDIDEglGDTCYNDYLM 61
Cdd:cd00041    1 CGGTLTASTSGtISSPNYPNNYPNNLNCVWTIEAPPGYRiRLTFEDFDLES--SPNCSYDYLE 61
 
Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 1-61 7.24e-03

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 32.00  E-value: 7.24e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 761641643   1 CDVSITAGNSQ-ITFPMSNDYYLYNDECTLTITNENGCM-MLFFTSLDIDEglGDTCYNDYLM 61
Cdd:cd00041    1 CGGTLTASTSGtISSPNYPNNYPNNLNCVWTIEAPPGYRiRLTFEDFDLES--SPNCSYDYLE 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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