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Conserved domains on  [gi|831435551|gb|AKM16252|]
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cytochrome b, partial (mitochondrion) [Cryptochloris wintoni]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-331 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 566.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSYLFLETWNIGIILLFAVMATAF 80
Cdd:MTH00100  49 LFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAF 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  81 MGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL********** 160
Cdd:MTH00100 129 MGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNP 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 161 *****************************************LGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 240
Cdd:MTH00100 209 SGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 241 GGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLFTLTWIGGQPVEHPFIIIGQLASILYFTIILVLMPI 320
Cdd:MTH00100 289 GGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPI 368

                        330
                 ....*....|.
gi 831435551 321 SSMIENRLLKW 331
Cdd:MTH00100 369 ASLIENNLLKW 379
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-331 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 566.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSYLFLETWNIGIILLFAVMATAF 80
Cdd:MTH00100  49 LFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAF 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  81 MGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL********** 160
Cdd:MTH00100 129 MGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNP 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 161 *****************************************LGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 240
Cdd:MTH00100 209 SGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 241 GGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLFTLTWIGGQPVEHPFIIIGQLASILYFTIILVLMPI 320
Cdd:MTH00100 289 GGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPI 368

                        330
                 ....*....|.
gi 831435551 321 SSMIENRLLKW 331
Cdd:MTH00100 369 ASLIENNLLKW 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-325 4.85e-87

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 266.66  E-value: 4.85e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSY-----LfleTWNIGIILLFAV 75
Cdd:COG1290   58 IFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLLLLT 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  76 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIVAALTMVHLL**** 154
Cdd:COG1290  135 MAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHR 214

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 155 ***********************--************************LGDPDNYIPANPLNTPPHIKPEWYFLFAYAI 232
Cdd:COG1290  215 HGHNNPPGPERKKTEKVDGVPFHpyYTVKDGFGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGI 294

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 233 LRSIP--NKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLFTLTWIGGQPVehPFIIIGQLASILY 310
Cdd:COG1290  295 LRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTY 372

                        330
                 ....*....|....*
gi 831435551 311 FTIILVLMPISSMIE 325
Cdd:COG1290  373 FAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-150 1.73e-67

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 210.30  E-value: 1.73e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSY--LFLETWNIGIILLFAVMAT 78
Cdd:cd00284   41 VFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMAT 120

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 831435551  79 AFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL 150
Cdd:cd00284  121 AFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLL 192
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-150 6.24e-63

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 197.99  E-value: 6.24e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551    1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYG--SYLFLETWNIGIILLFAVMAT 78
Cdd:pfam00033  32 VFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMST 111

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 831435551   79 AFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL 150
Cdd:pfam00033 112 AFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLL 183
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 210-291 1.38e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 53.26  E-value: 1.38e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  210 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSILILAAFPLLHMSNQRSLMF-RPLSQCMFwiLVADLFTLt 288
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF--LFGTVVAL- 141


                  ...
gi 831435551  289 WIG 291
Cdd:TIGR01156 142 WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-331 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 566.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSYLFLETWNIGIILLFAVMATAF 80
Cdd:MTH00100  49 LFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAF 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  81 MGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL********** 160
Cdd:MTH00100 129 MGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNP 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 161 *****************************************LGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 240
Cdd:MTH00100 209 SGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 241 GGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLFTLTWIGGQPVEHPFIIIGQLASILYFTIILVLMPI 320
Cdd:MTH00100 289 GGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPI 368

                        330
                 ....*....|.
gi 831435551 321 SSMIENRLLKW 331
Cdd:MTH00100 369 ASLIENNLLKW 379
CYTB MTH00119
cytochrome b; Provisional
 1-331 4.36e-179

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 500.20  E-value: 4.36e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSYLFLETWNIGIILLFAVMATAF 80
Cdd:MTH00119  50 LFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAF 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  81 MGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL********** 160
Cdd:MTH00119 130 VGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNP 209

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 161 *****************************************LGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 240
Cdd:MTH00119 210 LGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKL 289

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 241 GGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLFTLTWIGGQPVEHPFIIIGQLASILYFTIILVLMPI 320
Cdd:MTH00119 290 GGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPL 369

                        330
                 ....*....|.
gi 831435551 321 SSMIENRLLKW 331
Cdd:MTH00119 370 LGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-331 5.09e-176

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 492.63  E-value: 5.09e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSYLFLETWNIGIILLFAVMATAF 80
Cdd:MTH00131  49 LFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAF 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  81 MGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL********** 160
Cdd:MTH00131 129 VGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNP 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 161 *****************************************LGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 240
Cdd:MTH00131 209 LGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKL 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 241 GGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLFTLTWIGGQPVEHPFIIIGQLASILYFTIILVLMPI 320
Cdd:MTH00131 289 GGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPL 368

                        330
                 ....*....|.
gi 831435551 321 SSMIENRLLKW 331
Cdd:MTH00131 369 AGWLENKALEW 379
CYTB MTH00074
cytochrome b; Provisional
 1-331 1.78e-173

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 486.11  E-value: 1.78e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSYLFLETWNIGIILLFAVMATAF 80
Cdd:MTH00074  50 LFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAF 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  81 MGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL********** 160
Cdd:MTH00074 130 VGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNP 209

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 161 *****************************************LGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 240
Cdd:MTH00074 210 TGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKL 289

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 241 GGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLFTLTWIGGQPVEHPFIIIGQLASILYFTIILVLMPI 320
Cdd:MTH00074 290 GGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPL 369

                        330
                 ....*....|.
gi 831435551 321 SSMIENRLLKW 331
Cdd:MTH00074 370 TGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-320 2.15e-162

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 457.45  E-value: 2.15e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSYLFLETWNIGIILLFAVMATAF 80
Cdd:MTH00191  46 LFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAF 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  81 MGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL********** 160
Cdd:MTH00191 126 LGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNP 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 161 *****************************************LGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 240
Cdd:MTH00191 206 LGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKL 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 241 GGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLFTLTWIGGQPVEHPFIIIGQLASILYFTIILVLMPI 320
Cdd:MTH00191 286 GGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-318 1.86e-155

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 439.60  E-value: 1.86e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSYLFLETWNIGIILLFAVMATAF 80
Cdd:MTH00156  39 LFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAF 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  81 MGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL********** 160
Cdd:MTH00156 119 LGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNP 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 161 *****************************************LGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 240
Cdd:MTH00156 199 LGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKL 278

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 831435551 241 GGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLFTLTWIGGQPVEHPFIIIGQLASILYFTIILVLM 318
Cdd:MTH00156 279 GGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00034
cytochrome b; Validated
 1-329 6.33e-152

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 431.44  E-value: 6.33e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSYLFLETWNIGIILLFAVMATAF 80
Cdd:MTH00034  49 IFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAF 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  81 MGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL********** 160
Cdd:MTH00034 129 VGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNP 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 161 *****************************************LGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 240
Cdd:MTH00034 209 TGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKL 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 241 GGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLFTLTWIGGQPVEHPFIIIGQLASILYFTIILVLMPI 320
Cdd:MTH00034 289 GGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPL 368


                 ....*....
gi 831435551 321 SSMIENRLL 329
Cdd:MTH00034 369 ISYLENKLI 377
CYTB MTH00145
cytochrome b; Provisional
 1-329 7.67e-146

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 415.84  E-value: 7.67e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSYLFLETWNIGIILLFAVMATAF 80
Cdd:MTH00145  50 LFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAF 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  81 MGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL********** 160
Cdd:MTH00145 130 LGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNP 209

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 161 *****************************************LGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 240
Cdd:MTH00145 210 LGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKL 289

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 241 GGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLFTLTWIGGQPVEHPFIIIGQLASILYFTIILVLmPI 320
Cdd:MTH00145 290 GGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PL 368


                 ....*....
gi 831435551 321 SSMIENRLL 329
Cdd:MTH00145 369 VQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-330 2.32e-138

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 397.13  E-value: 2.32e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSYLFLETWNIGIILLFAVMATAF 80
Cdd:MTH00016  50 LFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAF 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  81 MGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL********** 160
Cdd:MTH00016 130 LGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNP 209

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 161 *****************************************LGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 240
Cdd:MTH00016 210 LGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKL 289

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 241 GGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLFTLTWIGGQPVEHPFIIIGQLASILYFTiILVLMPI 320
Cdd:MTH00016 290 GGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFF-YFMINPL 368

                        330
                 ....*....|
gi 831435551 321 SSMIENRLLK 330
Cdd:MTH00016 369 LMKLWDKLLK 378
CYTB MTH00022
cytochrome b; Validated
 2-330 1.01e-130

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 377.50  E-value: 1.01e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   2 FLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSYLFLETWNIGIILLFAVMATAFM 81
Cdd:MTH00022  49 FLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFM 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  82 GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL*********** 161
Cdd:MTH00022 129 GYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPI 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 162 ****************************************LGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLG 241
Cdd:MTH00022 209 GLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLG 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 242 GVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLFTLTWIGGQPVEHPFIIIGQLASILYFTIILVLMPIS 321
Cdd:MTH00022 289 GVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLL 368


                 ....*....
gi 831435551 322 SMIENRLLK 330
Cdd:MTH00022 369 GELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
 1-330 2.72e-129

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 374.04  E-value: 2.72e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSYLFLETWNIGIILLFAVMATAF 80
Cdd:MTH00053  50 IFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAF 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  81 MGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL********** 160
Cdd:MTH00053 130 IGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNP 209

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 161 *****************************************LGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 240
Cdd:MTH00053 210 IGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKL 289

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 241 GGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLFTLTWIGGQPVEHPFIIIGQLASILYFTIILVLMPI 320
Cdd:MTH00053 290 GGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPL 369

                        330
                 ....*....|
gi 831435551 321 SSMIENRLLK 330
Cdd:MTH00053 370 AGYLENKLLK 379
CYTB MTH00224
cytochrome b; Provisional
 1-330 9.38e-120

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 349.99  E-value: 9.38e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSYLFLETWNIGIILLFAVMATAF 80
Cdd:MTH00224  50 LFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAF 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  81 MGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL********** 160
Cdd:MTH00224 130 LGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNP 209

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 161 *****************************************LGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 240
Cdd:MTH00224 210 IGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKL 289

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 241 GGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLFTLTWIGGQPVEHPFIIIGQLASILYFTiILVLMPI 320
Cdd:MTH00224 290 GGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS-YFIISPA 368

                        330
                 ....*....|
gi 831435551 321 SSMIENRLLK 330
Cdd:MTH00224 369 ISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-326 1.68e-96

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 290.69  E-value: 1.68e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSYLFLETWNIGIILLFAVMATAF 80
Cdd:MTH00033  46 VLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAF 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  81 MGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL********** 160
Cdd:MTH00033 126 IGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEP 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 161 *******--**********************************LGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPN 238
Cdd:MTH00033 206 LGLVGLSdrTAFHVYFTIKDILGFLILFGVFVIIGIEPRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPN 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 239 KLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLFTLTWIGGQPV-EHPFIIIGQLASILYFTIILVL 317
Cdd:MTH00033 286 KLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVL 365


                 ....*....
gi 831435551 318 MPISSMIEN 326
Cdd:MTH00033 366 VPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-325 4.85e-87

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 266.66  E-value: 4.85e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSY-----LfleTWNIGIILLFAV 75
Cdd:COG1290   58 IFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLLLLT 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  76 MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIVAALTMVHLL**** 154
Cdd:COG1290  135 MAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHR 214

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 155 ***********************--************************LGDPDNYIPANPLNTPPHIKPEWYFLFAYAI 232
Cdd:COG1290  215 HGHNNPPGPERKKTEKVDGVPFHpyYTVKDGFGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGI 294

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 233 LRSIP--NKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLFTLTWIGGQPVehPFIIIGQLASILY 310
Cdd:COG1290  295 LRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTY 372

                        330
                 ....*....|....*
gi 831435551 311 FTIILVLMPISSMIE 325
Cdd:COG1290  373 FAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-318 6.20e-82

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 252.55  E-value: 6.20e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSYLFLETWNIGIILLFAVMATAF 80
Cdd:MTH00086  38 TFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAF 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  81 MGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL********** 160
Cdd:MTH00086 118 MGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLI-FLHSTGSTS 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 161 *****************************************LGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 240
Cdd:MTH00086 197 SLYCHGDYDKICFGPEYWNKDAYNIIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKV 276

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 831435551 241 GGVLALVFSILILAAFPLLhmsNQRSLMFRPLSQCMFWILVADLFTLTWIGGQPVEHPFIIIGQLASILYFTIILVLM 318
Cdd:MTH00086 277 LGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-150 1.73e-67

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 210.30  E-value: 1.73e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSY--LFLETWNIGIILLFAVMAT 78
Cdd:cd00284   41 VFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMAT 120

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 831435551  79 AFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL 150
Cdd:cd00284  121 AFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLL 192
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-150 6.24e-63

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 197.99  E-value: 6.24e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551    1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYG--SYLFLETWNIGIILLFAVMAT 78
Cdd:pfam00033  32 VFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMST 111

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 831435551   79 AFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL 150
Cdd:pfam00033 112 AFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLL 183
CYTB MTH00046
cytochrome b; Validated
 2-320 5.71e-57

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 188.27  E-value: 5.71e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   2 FLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSYLFLETWNIGIILLFAVMATAFM 81
Cdd:MTH00046  41 LLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFL 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  82 GYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALTMVHLL*********** 161
Cdd:MTH00046 121 GYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPL 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 162 *******-*********************************LGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 240
Cdd:MTH00046 201 FSSNGYSdVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKI 280

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 241 GGvLALVFSILILAAFPllhmSNQRSLMFRPLSQCMFWILVADLFTLTWIGGQPVEHPFIIIGQLASILyftiILVLMPI 320
Cdd:MTH00046 281 GG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVL----MVLLLFI 351
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
210-310 2.56e-46

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 152.25  E-value: 2.56e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  210 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSILILAAFPLLHMSNQRSLMFRPLSQCMFWILVADLFTLTW 289
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 831435551  290 IGGQPVEHPFIIIGQLASILY 310
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 202-306 5.91e-40

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 137.39  E-value: 5.91e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 202 LGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSILILAAFPLLHMSNQRSlMFRPLSQCMFWILV 281
Cdd:cd00290   44 LGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPNKLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFL 122

                         90       100
                 ....*....|....*....|....*
gi 831435551 282 ADLFTLTWIGGQPVEHPFIIIGQLA 306
Cdd:cd00290  123 AGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
40-150 6.52e-30

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 111.95  E-value: 6.52e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   40 SMFFICLFTHVGRGIYYGSYLFLE--TWNIGIILLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 117
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 831435551  118 GGFSVDKATLTRFFAFHF-ILPFIVAALTMVHLL 150
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLL 114
PRK03735 PRK03735
cytochrome b6; Provisional
 1-150 6.83e-30

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 113.65  E-value: 6.83e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   1 LFLPMHYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSYLFLE--TWNIGIILLFAVMAT 78
Cdd:PRK03735  60 MFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGL 139

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 831435551  79 AFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIVAALTMVHLL 150
Cdd:PRK03735 140 GFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFL 212
petB CHL00070
cytochrome b6
 6-150 1.44e-26

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 104.42  E-value: 1.44e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551   6 HYTSDTSTAFSSITHICRDVNNGWLIRYLHANGASMFFICLFTHVGRGIYYGSYLFLE--TWNIGIILLFAVMATAFMGY 83
Cdd:CHL00070  57 YYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGY 136

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 831435551  84 VLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIVAALTMVHLL 150
Cdd:CHL00070 137 SLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFL 204
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 210-291 2.35e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 58.27  E-value: 2.35e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551 210 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSILILAAFPLLHMSNQRSLMF-RPLSQCMFwiLVADLFTLt 288
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPVATAVF--LFGTLVTL- 142


                 ...
gi 831435551 289 WIG 291
Cdd:COG5679  143 WLG 145
petD CHL00058
cytochrome b6/f complex subunit IV
 210-279 4.08e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 57.70  E-value: 4.08e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 831435551 210 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSILILAAFPLLHMSNQRSLMF-RPLSQCMFWI 279
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFrRPVATTVFLI 135
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 210-291 1.38e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 53.26  E-value: 1.38e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 831435551  210 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVFSILILAAFPLLHMSNQRSLMF-RPLSQCMFwiLVADLFTLt 288
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF--LFGTVVAL- 141


                  ...
gi 831435551  289 WIG 291
Cdd:TIGR01156 142 WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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