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Conserved domains on  [gi|985559687|gb|AMD11036|]
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cytochrome b, partial (mitochondrion) [Xenopus laevis]

Protein Classification

cytochrome b( domain architecture ID 1000033)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31791
cytochrome b; Provisional
 1-93 4.47e-72

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00074:

Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 218.01  E-value: 4.47e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00074  48 TGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMAT 127

                         90
                 ....*....|...
gi 985559687  81 AFVGYVLPWGQMS 93
Cdd:MTH00074 128 AFVGYVLPWGQMS 140
 
Name Accession Description Interval E-value
CYTB MTH00074
cytochrome b; Provisional
 1-93 4.47e-72

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 218.01  E-value: 4.47e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00074  48 TGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMAT 127

                         90
                 ....*....|...
gi 985559687  81 AFVGYVLPWGQMS 93
Cdd:MTH00074 128 AFVGYVLPWGQMS 140
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-93 2.41e-40

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 131.72  E-value: 2.41e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSF--LYKETWNIGVILLFLVM 78
Cdd:cd00284   39 TGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTM 118

                         90
                 ....*....|....*
gi 985559687  79 ATAFVGYVLPWGQMS 93
Cdd:cd00284  119 ATAFMGYVLPWGQMS 133
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-93 5.54e-40

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 135.69  E-value: 5.54e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSflYKE----TWNIGVILLFL 76
Cdd:COG1290   56 TGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLL 133

                         90
                 ....*....|....*..
gi 985559687  77 VMATAFVGYVLPWGQMS 93
Cdd:COG1290  134 TMAEAFTGYSLPWDQLS 150
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-93 9.61e-38

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 124.80  E-value: 9.61e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687    1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLY--KETWNIGVILLFLVM 78
Cdd:pfam00033  30 TGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSYprELTWVIGVILLVLTM 109

                          90
                  ....*....|....*
gi 985559687   79 ATAFVGYVLPWGQMS 93
Cdd:pfam00033 110 STAFIGYVLPWGQMS 124
 
Name Accession Description Interval E-value
CYTB MTH00074
cytochrome b; Provisional
 1-93 4.47e-72

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 218.01  E-value: 4.47e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00074  48 TGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMAT 127

                         90
                 ....*....|...
gi 985559687  81 AFVGYVLPWGQMS 93
Cdd:MTH00074 128 AFVGYVLPWGQMS 140
CYTB MTH00119
cytochrome b; Provisional
 1-93 1.04e-70

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 214.38  E-value: 1.04e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00119  48 TGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMAT 127

                         90
                 ....*....|...
gi 985559687  81 AFVGYVLPWGQMS 93
Cdd:MTH00119 128 AFVGYVLPWGQMS 140
CYTB MTH00131
cytochrome b; Provisional
 1-93 6.05e-70

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 212.59  E-value: 6.05e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00131  47 TGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMT 126

                         90
                 ....*....|...
gi 985559687  81 AFVGYVLPWGQMS 93
Cdd:MTH00131 127 AFVGYVLPWGQMS 139
CYTB MTH00100
cytochrome b; Provisional
 1-93 1.22e-67

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 206.80  E-value: 1.22e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00100  47 TGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMAT 126

                         90
                 ....*....|...
gi 985559687  81 AFVGYVLPWGQMS 93
Cdd:MTH00100 127 AFMGYVLPWGQMS 139
CYTB MTH00156
cytochrome b; Provisional
 1-93 1.70e-64

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 198.08  E-value: 1.70e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00156  37 TGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMAT 116

                         90
                 ....*....|...
gi 985559687  81 AFVGYVLPWGQMS 93
Cdd:MTH00156 117 AFLGYVLPWGQMS 129
CYTB MTH00191
cytochrome b; Provisional
 1-93 2.35e-64

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 197.83  E-value: 2.35e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00191  44 TGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMAT 123

                         90
                 ....*....|...
gi 985559687  81 AFVGYVLPWGQMS 93
Cdd:MTH00191 124 AFLGYVLPWGQMS 136
CYTB MTH00145
cytochrome b; Provisional
 1-93 4.26e-60

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 187.42  E-value: 4.26e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00145  48 TGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGT 127

                         90
                 ....*....|...
gi 985559687  81 AFVGYVLPWGQMS 93
Cdd:MTH00145 128 AFLGYVLPWGQMS 140
CYTB MTH00034
cytochrome b; Validated
 1-93 6.42e-60

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 186.84  E-value: 6.42e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00034  47 TGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLT 126

                         90
                 ....*....|...
gi 985559687  81 AFVGYVLPWGQMS 93
Cdd:MTH00034 127 AFVGYVLPWGQMS 139
CYTB MTH00016
cytochrome b; Validated
 1-93 9.49e-56

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 176.02  E-value: 9.49e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00016  48 TGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMAT 127

                         90
                 ....*....|...
gi 985559687  81 AFVGYVLPWGQMS 93
Cdd:MTH00016 128 AFLGYVLPWGQMS 140
CYTB MTH00224
cytochrome b; Provisional
 1-93 6.51e-48

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 155.85  E-value: 6.51e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00224  48 TGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMAT 127

                         90
                 ....*....|...
gi 985559687  81 AFVGYVLPWGQMS 93
Cdd:MTH00224 128 AFLGYVLPWGQMS 140
CYTB MTH00022
cytochrome b; Validated
 1-93 1.95e-45

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 149.47  E-value: 1.95e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00022  46 TGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMAT 125

                         90
                 ....*....|...
gi 985559687  81 AFVGYVLPWGQMS 93
Cdd:MTH00022 126 AFMGYVLPWGQMS 138
CYTB MTH00053
cytochrome b; Provisional
 1-93 3.89e-43

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 143.69  E-value: 3.89e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00053  48 TGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILT 127

                         90
                 ....*....|...
gi 985559687  81 AFVGYVLPWGQMS 93
Cdd:MTH00053 128 AFIGYVLPWGQMS 140
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-93 2.41e-40

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 131.72  E-value: 2.41e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSF--LYKETWNIGVILLFLVM 78
Cdd:cd00284   39 TGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTM 118

                         90
                 ....*....|....*
gi 985559687  79 ATAFVGYVLPWGQMS 93
Cdd:cd00284  119 ATAFMGYVLPWGQMS 133
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-93 5.54e-40

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 135.69  E-value: 5.54e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSflYKE----TWNIGVILLFL 76
Cdd:COG1290   56 TGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLL 133

                         90
                 ....*....|....*..
gi 985559687  77 VMATAFVGYVLPWGQMS 93
Cdd:COG1290  134 TMAEAFTGYSLPWDQLS 150
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-93 9.61e-38

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 124.80  E-value: 9.61e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687    1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLY--KETWNIGVILLFLVM 78
Cdd:pfam00033  30 TGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGGFSYprELTWVIGVILLVLTM 109

                          90
                  ....*....|....*
gi 985559687   79 ATAFVGYVLPWGQMS 93
Cdd:pfam00033 110 STAFIGYVLPWGQMS 124
CYTB MTH00033
cytochrome b; Provisional
 1-93 1.85e-36

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 126.21  E-value: 1.85e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00033  44 TGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLT 123

                         90
                 ....*....|...
gi 985559687  81 AFVGYVLPWGQMS 93
Cdd:MTH00033 124 AFIGYVLPWGQMS 136
CYTB MTH00086
cytochrome b; Provisional
 1-93 2.86e-31

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 111.96  E-value: 2.86e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00086  36 TGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMME 115

                         90
                 ....*....|...
gi 985559687  81 AFVGYVLPWGQMS 93
Cdd:MTH00086 116 AFMGYVLVWAQMS 128
CYTB MTH00046
cytochrome b; Validated
 1-93 6.31e-23

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 89.66  E-value: 6.31e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKETWNIGVILLFLVMAT 80
Cdd:MTH00046  38 TGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVE 117

                         90
                 ....*....|...
gi 985559687  81 AFVGYVLPWGQMS 93
Cdd:MTH00046 118 AFLGYILPWHQMS 130
petB CHL00070
cytochrome b6
 1-92 7.70e-14

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 63.59  E-value: 7.70e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 985559687   1 TGLFLAMHYTADTSMAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSFLYKE--TWNIGVILLFLVM 78
Cdd:CHL00070  50 TGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTV 129

                         90
                 ....*....|....
gi 985559687  79 ATAFVGYVLPWGQM 92
Cdd:CHL00070 130 SFGVTGYSLPWDQI 143
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
42-93 7.86e-14

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 62.64  E-value: 7.86e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 985559687   42 SFFFICIYLHIGRGLYYGSFLYKE--TWNIGVILLFLVMATAFVGYVLPWGQMS 93
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLS 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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