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Conserved domains on  [gi|998673662|gb|AMK69997|]
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NADH dehydrogenase subunit 1, partial (mitochondrion) [Plagiorchiida sp. n. 1 PH-2016]

Protein Classification

complex I subunit 1 family protein( domain architecture ID 103)

complex I subunit 1 family protein similar to NADH dehydrogenase subunit 1, which is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

EC:  7.1.1.-
Gene Ontology:  GO:0016655|GO:0016020
PubMed:  23417064|24059520

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06076 super family cl00469
NADH-quinone oxidoreductase subunit NuoH;
1-127 1.13e-41

NADH-quinone oxidoreductase subunit NuoH;


The actual alignment was detected with superfamily member MTH00058:

Pssm-ID: 469782  Cd Length: 293  Bit Score: 139.29  E-value: 1.13e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662   1 VGLSGLLQSFADLLKLIVKYKVFWYEVRTWFSWFSVFLLVLISCCYSYLYCVLYAGLYGNNWLLWFLLVVSLTGYSLLGV 80
Cdd:MTH00058  41 VGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCV 120

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 998673662  81 GWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSYDVFDVS 127
Cdd:MTH00058 121 GWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFY 167
 
Name Accession Description Interval E-value
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 1-127 1.13e-41

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 139.29  E-value: 1.13e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662   1 VGLSGLLQSFADLLKLIVKYKVFWYEVRTWFSWFSVFLLVLISCCYSYLYCVLYAGLYGNNWLLWFLLVVSLTGYSLLGV 80
Cdd:MTH00058  41 VGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCV 120

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 998673662  81 GWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSYDVFDVS 127
Cdd:MTH00058 121 GWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFY 167
NADHdh pfam00146
NADH dehydrogenase;
1-126 9.52e-11

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 57.48  E-value: 9.52e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662    1 VGLSGLLQSFADLLKLIVKYKVFWYEVRTWFSWFSVfLLVLISCCYSYLYCVLYAGLYG---NNWLLWFLLVVSLTGYSL 77
Cdd:pfam00146  36 VGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAP-IIAFIPALLAFAVIPFGPGLVLadlNVGILYILALSSLGVYGI 114

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 998673662   78 LGVGWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSYDVFDV 126
Cdd:pfam00146 115 LLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEI 163
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-126 1.08e-08

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 51.67  E-value: 1.08e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662   1 VGLSGLLQSFADLLKLIVKYKVFWYEVRTWfswfsVFLLVLISCCYSYLycVLYAGL-YGNNW--------LLWFLLVVS 71
Cdd:COG1005   49 VGPFGLLQPLADGLKLLFKEDIIPAGADKF-----LFLLAPILAFIPAL--LAFAVIpFGPGLvladlnvgLLYVLAVSS 121

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 998673662  72 LTGYSLLGVGWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSYDVFDV 126
Cdd:COG1005  122 LGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEI 176
 
Name Accession Description Interval E-value
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 1-127 1.13e-41

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 139.29  E-value: 1.13e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662   1 VGLSGLLQSFADLLKLIVKYKVFWYEVRTWFSWFSVFLLVLISCCYSYLYCVLYAGLYGNNWLLWFLLVVSLTGYSLLGV 80
Cdd:MTH00058  41 VGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCV 120

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 998673662  81 GWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSYDVFDVS 127
Cdd:MTH00058 121 GWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFY 167
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 1-127 7.99e-13

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 63.13  E-value: 7.99e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662   1 VGLSGLLQSFADLLKLIVKYKVFWYEVRTWFSWFSVFLLVLISCCYSYLYCVLYAGLYGNNWLLWFLLVVSLTGYSLLGV 80
Cdd:MTH00225  41 VGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLA 120

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 998673662  81 GWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSYDVFDVS 127
Cdd:MTH00225 121 GWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFS 167
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-127 8.65e-13

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 63.25  E-value: 8.65e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662   1 VGLSGLLQSFADLLKLIVKYKVFWYEVRTWFSWFSVFLLVLISCCYSYLYCVLYAGLYGNNWLLWFLLVVSLTGYSLLGV 80
Cdd:MTH00193  42 VGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIA 121

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 998673662  81 GWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSYDVFDVS 127
Cdd:MTH00193 122 GWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFM 168
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 1-122 3.17e-12

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 61.46  E-value: 3.17e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662   1 VGLSGLLQSFADLLKLIVKYKVFWYEVRTWFSWFSVFLLVLISCCYSYLYCVLYAGLYGNNWLLWFLLVVSLTGYSLLGV 80
Cdd:MTH00218  42 VGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWS 121

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 998673662  81 GWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSYD 122
Cdd:MTH00218 122 GWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFS 163
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 1-122 6.36e-12

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 60.91  E-value: 6.36e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662   1 VGLSGLLQSFADLLKLIVKYKVFWYEVRTWFSWFSVFLLVLISCCYSYLYCVLYAGLYGNNWLLWFLLVVSLTGYSLLGV 80
Cdd:MTH00195  42 VGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGS 121

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 998673662  81 GWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSYD 122
Cdd:MTH00195 122 GWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFD 163
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 1-128 1.27e-11

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 59.88  E-value: 1.27e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662   1 VGLSGLLQSFADLLKLIVKYKVFWYEVRTWFSWFSVFLLVLISCCYSYLYCVLYAGLYGNNWLLWFLLVVSLTGYSLLGV 80
Cdd:MTH00143  41 VGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLA 120

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 998673662  81 GWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSYDVFDVSD 128
Cdd:MTH00143 121 GWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISE 168
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 1-127 5.27e-11

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 58.06  E-value: 5.27e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662   1 VGLSGLLQSFADLLKLIVKYKVFWYEVRTWFSWFSVFLLVLISCCYSYLYCVLYAGLYGNNWLLWFLLVVSLTGYSLLGV 80
Cdd:MTH00040  44 VGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGS 123

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 998673662  81 GWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSYDVFDVS 127
Cdd:MTH00040 124 GWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSLSSIS 170
NADHdh pfam00146
NADH dehydrogenase;
1-126 9.52e-11

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 57.48  E-value: 9.52e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662    1 VGLSGLLQSFADLLKLIVKYKVFWYEVRTWFSWFSVfLLVLISCCYSYLYCVLYAGLYG---NNWLLWFLLVVSLTGYSL 77
Cdd:pfam00146  36 VGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAP-IIAFIPALLAFAVIPFGPGLVLadlNVGILYILALSSLGVYGI 114

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 998673662   78 LGVGWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSYDVFDV 126
Cdd:pfam00146 115 LLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEI 163
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-126 9.00e-09

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 51.73  E-value: 9.00e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662   1 VGLSGLLQSFADLLKLIVKYKVFWYEVRTWfswfsVFLLV-LISCCYSYLycVLYAGLYGNNW--------LLWFLLVVS 71
Cdd:PRK06076  50 VGPFGLLQLVADGIKLLFKEDIIPAGADKV-----LFLLApVIAFIPAFL--AWAVIPFGPELviadlnvgILYILAISS 122

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 998673662  72 LTGYSLLGVGWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSYDVFDV 126
Cdd:PRK06076 123 LGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLNLSDI 177
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-126 1.08e-08

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 51.67  E-value: 1.08e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662   1 VGLSGLLQSFADLLKLIVKYKVFWYEVRTWfswfsVFLLVLISCCYSYLycVLYAGL-YGNNW--------LLWFLLVVS 71
Cdd:COG1005   49 VGPFGLLQPLADGLKLLFKEDIIPAGADKF-----LFLLAPILAFIPAL--LAFAVIpFGPGLvladlnvgLLYVLAVSS 121

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 998673662  72 LTGYSLLGVGWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSYDVFDV 126
Cdd:COG1005  122 LGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEI 176
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 1-122 2.28e-08

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 50.55  E-value: 2.28e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662   1 VGLSGLLQSFADLLKLIVKYKVF-WYEVRTWFSWFSVFLLVLISCCYSyLYCVLYAGLYGNNWLLWFLLVVSLTGYSLLG 79
Cdd:MTH00010  43 VGLAGIPQPFADAIKLFTKEQTKpSPANITPFLGAPMMSLILALLLWS-LYPHKHPSFFLKFSILLFLCVSSMNVYTTLG 121

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 998673662  80 VGWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSYD 122
Cdd:MTH00010 122 AGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFS 164
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 1-126 5.79e-07

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 46.65  E-value: 5.79e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662   1 VGLSGLLQSFADLLKLIVKYKVFWYEVRTWFSWF----SVFLLVLISCCYSYLYCVLYAGLygNNWLLWFLLVVSLTGYS 76
Cdd:MTH00216  46 VGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVapvlSFTLALIVWGVIPYERGVLISDF--KIGILYILAISSISVYA 123

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 998673662  77 LLGVGWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSYDVFDV 126
Cdd:MTH00216 124 ILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLSITEI 173
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-115 9.12e-07

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 46.14  E-value: 9.12e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662   1 VGLSGLLQSFADLLKLIVKYKVfwyevRTWFSwfSVFLLVLISCCYSYLYCVLYAGL---YG----NNWLLWFLLVVSLT 73
Cdd:MTH00134  46 VGPYGLLQPIADGVKLFIKEPV-----RPSTS--SPFLFLATPMLALTLALTLWAPMpmpYPvtdlNLGILFILALSSLA 118

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 998673662  74 GYSLLGVGWSSLNKYALLGSIRSSFSSVTFEASF----MCVVIIFG 115
Cdd:MTH00134 119 VYSILGSGWASNSKYALIGALRAVAQTISYEVSLglilLSVIIFTG 164
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-121 6.35e-06

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 43.84  E-value: 6.35e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662   1 VGLSGLLQSFADLLKLIVKYKVfwyevRTWFSwfSVFLLVLISCCYSYLYCVLYAGLYGNNWL-------LWFLLVVSLT 73
Cdd:MTH00071  45 VGPMGLLQPIADGLKLFIKEPI-----RPSTS--SQILFILMPTMALTLALIIWTPLPMPNNLsnlnlgiLFILALSSLA 117

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 998673662  74 GYSLLGVGWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSY 121
Cdd:MTH00071 118 VYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGF 165
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 1-126 5.95e-05

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 41.16  E-value: 5.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662   1 VGLSGLLQSFADLLKLIVKYKVFWYEVRTwFSWFSVFLLVLISCCYSYLYCVLYAGLYGNNW---LLWFLLVVSLTGYSL 77
Cdd:MTH00029  47 VGPWGLVQPIADGVKLLTKELIIPSQANK-FLYYIAPIISFTLAILAWAIVTMDQGVFLSDLdvgVLYFLAISSLSVYAI 125

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 998673662  78 LGVGWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSYDVFDV 126
Cdd:MTH00029 126 LLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISEI 174
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 1-126 9.95e-05

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 40.48  E-value: 9.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662   1 VGLSGLLQSFADLLKLIVKYKVFWYEVRTWF----SWFSVFLLVLISCCYSYLYCVLYAGLygNNWLLWFLLVVSLTGYS 76
Cdd:MTH00054  42 VGVYGLLQPLADGLKLFTKEIIIPNHANIFIyimaPILSLTLAFIAWGVIPYGEGVVLSDL--GIGILYLFAVSSISVYA 119

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 998673662  77 LLGVGWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSYDVFDV 126
Cdd:MTH00054 120 VLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTEI 169
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 1-121 1.94e-04

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 39.50  E-value: 1.94e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662   1 VGLSGLLQSFADLLKLIVKYKVFWYEVRTWFSWFSVFLLVLISCCYSYLYCVLYAGLYGNNWLLWFLLVVSLTGYSLLGV 80
Cdd:MTH00090  36 VSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLIS 115

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 998673662  81 GWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSY 121
Cdd:MTH00090 116 GIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSF 156
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 63-115 2.27e-04

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 39.11  E-value: 2.27e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 998673662  63 LLWFLLVVSLTGYSLLGVGWSSLNKYALLGSIRSSFSSVTFEASF----MCVVIIFG 115
Cdd:MTH00111 107 LLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLgiilLSLILLSG 163
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-121 3.47e-04

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 38.84  E-value: 3.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 998673662   1 VGLSGLLQSFADLLKLIVKYKVfwyevRTWFSWFSVFLL--VLISCCYSYLYCVL---YAGLYGNNWLLWFLLVVSLTGY 75
Cdd:MTH00104  40 VGPYGLLQPFADAMKLFTKEPL-----RPLTSSTTMFIIapILALTLALTMWIPLpmpYPLINMNLGVLFILAMSSLAVY 114

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 998673662  76 SLLGVGWSSLNKYALLGSIRSSFSSVTFEASFMCVVIIFGLVVGSY 121
Cdd:MTH00104 115 SILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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