|
Name |
Accession |
Description |
Interval |
E-value |
| ND4 |
MTH00163 |
NADH dehydrogenase subunit 4; Provisional |
1-437 |
2.63e-108 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214443 [Multi-domain] Cd Length: 445 Bit Score: 327.11 E-value: 2.63e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 1 MFSFLFLILGLFWMVLPLD---VMVSFLISIFFLMILVDWEGLWMNYVGGLFGLDLMGFNLVMLSMWISMLMIIAS--FK 75
Cdd:MTH00163 1 MLKFLFMLLFLIPLCFLKNswwLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSesVY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 76 KMELEDKKFFFYVLMMALLLSLCFSCLNLLGFFLFFESVLFPIIMMIFKWGVQPERLQAGIYMLFYTLFGSMPLFIFLLF 155
Cdd:MTH00163 81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 156 SKSSLDFLFLYFEKIYY--NNFVFFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKIFYIK 233
Cdd:MTH00163 161 LYNNSGSLSFFLLNFFGslNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 234 NLMEFSSWVMSVCLVGGVYISMVCLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANI 313
Cdd:MTH00163 241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 314 MYERFFTRSVILLKGVGFIFPFLSMWWFFFCVINMAAPPSMNLLGEILLMGSMLKYSFFLLFPLCFISFFSASFSLYMYS 393
Cdd:MTH00163 321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1016841412 394 YTQHGKGW-CIFSVNGILMREYFLMFLHFFPLVLWVMKMELVTSW 437
Cdd:MTH00163 401 YSQHGKYYsGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFMLW 445
|
|
| ND4 |
MTH00150 |
NADH dehydrogenase subunit 4; Provisional |
44-438 |
5.15e-100 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214435 [Multi-domain] Cd Length: 417 Bit Score: 304.84 E-value: 5.15e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 44 YVGGLFGLDLMGFNLVMLSMWISMLMIIASF--KKMELEDKKFFFYVLMMALLLSLCFSCLNLLGFFLFFESVLFPIIMM 121
Cdd:MTH00150 15 SLSELFSVDSMSSLLISLSLWISGLMMLASQksVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYFFFEASLIPTLLL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 122 IFKWGVQPERLQAGIYMLFYTLFGSMPLFIFLL-----FSKSSLDFLFLYFEKIYYNNFVFFMIVVAFFVKIPMFIFHLW 196
Cdd:MTH00150 95 ILGWGYQPERLQAGMYMMLYTVGASLPLLLVILwmsssYGSSFMLLISSLRKLLSSMGLWGLLVFLAFLVKLPMYPFHLW 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 197 LPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKIFYIKNLMEFSSWVMSVCLVGGVYISMVCLVQVDLKSLIAYSSVCHMS 276
Cdd:MTH00150 175 LPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMS 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 277 LALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVGFIFPFLSMWWFFFCVINMAAPPSMNL 356
Cdd:MTH00150 255 LVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNL 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 357 LGEILLMGSMLKYSFFLLFPLCFISFFSASFSLYMYSYTQHGKGWC-IFSVNGILMREYFLMFLHFFPLVLWVMKMELVT 435
Cdd:MTH00150 335 LSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSfLKPFNELKSSEMLLLLLHWVPLLLLILKSDLLF 414
|
...
gi 1016841412 436 SWL 438
Cdd:MTH00150 415 MWI 417
|
|
| ND4 |
MTH00205 |
NADH dehydrogenase subunit 4; Provisional |
1-433 |
3.34e-93 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214457 [Multi-domain] Cd Length: 448 Bit Score: 288.42 E-value: 3.34e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 1 MFSFLFLILGLFWMVLPLdVMVSFLISIFFLMILVDWEGLWMNYVGGLFGLDLMGFNLVMLSMWISMLMIIASFK--KME 78
Cdd:MTH00205 6 VFSLLIILFVLKFKDWSF-FSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKvfKSN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 79 LEDKKFFFYVLMMALLLSLCFSCLNLLGFFLFFESVLFPIIMMIFKWGVQPERLQAGIYMLFYTLFGSMPLFIFLLF--- 155
Cdd:MTH00205 85 KNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLFFlns 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 156 --SKSSLDFLFLYFEKIYYNNFVFFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKIFYIK 233
Cdd:MTH00205 165 lnFSLSMFFNFPLNFSDFYLFLYWIFLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITSMLYK 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 234 NLMEFSSWVMSVCLVGGVYISMVCLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANI 313
Cdd:MTH00205 245 LNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFALANV 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 314 MYERFFTRSVILLKGVGFIFPFLSMWWFFFCVINMAAPPSMNLLGEILLMGSMLKYSFFLLFPLCFISFFSASFSLYMYS 393
Cdd:MTH00205 325 NYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSLYLYS 404
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1016841412 394 YTQHGK-GWCIFSVNGILMREYFLMFLHFFPLVLWVMKMEL 433
Cdd:MTH00205 405 QSQHGKvSSQISSFLAISEREYYILILHWFPLNILILKLKI 445
|
|
| ND4 |
MTH00014 |
NADH dehydrogenase subunit 4; Validated |
51-438 |
1.30e-90 |
|
NADH dehydrogenase subunit 4; Validated
Pssm-ID: 214399 [Multi-domain] Cd Length: 452 Bit Score: 282.01 E-value: 1.30e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 51 LDLMGFNLVMLSMWISMLMIIASFKKMELED--KKFFFYVLMMALLLSLCFSCLNLLGFFLFFESVLFPIIMMIFKWGVQ 128
Cdd:MTH00014 57 SDMLSAPLITLTLWITALMILASFKIFQNNKapKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQ 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 129 PERLQAGIYMLFYTLFGSMPLFIFLLFSKSSLDFLFLY-----FEKIYYNNFVFFMIVVAFFVKIPMFIFHLWLPKAHVE 203
Cdd:MTH00014 137 PERLQASFYLMIYTVTASLPLLMSILLIFYTNNSLSMLmssmePPSIYLMNLWWLITILAFMVKMPLYTVHLWLPKAHVE 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 204 APIGGSMILAGVLLKLGIFGLYRFKIFYIKNLMEFSSWVMSVCLVGGVYISMVCLVQVDLKSLIAYSSVCHMSLALGGFL 283
Cdd:MTH00014 217 APVAGSMILAGILLKLGGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIM 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 284 SLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVGFIFPFLSMWWFFFCVINMAAPPSMNLLGEILLM 363
Cdd:MTH00014 297 SNTSWGWQGALAMMIAHGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLL 376
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1016841412 364 GSMLKYSFFLLFPLCFISFFSASFSLYMYSYTQHGKGWC-IFSVNGILMREYFLMFLHFFPLVLWVMKMELVTSWL 438
Cdd:MTH00014 377 TSILSSSLSTAILLAITSFLAAAYSLFLYTSTQHGSPPSfMNPLNLFTPRNHTLMTLHLVPLFILILKPDLITNWL 452
|
|
| ND4 |
MTH00044 |
NADH dehydrogenase subunit 4; Validated |
20-426 |
6.58e-88 |
|
NADH dehydrogenase subunit 4; Validated
Pssm-ID: 214411 [Multi-domain] Cd Length: 458 Bit Score: 274.93 E-value: 6.58e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 20 VMVSFLISIFFLMILV---DWEGLWmNYVGGLFGLDLMGFNLVMLSMWISMLMIIASFKKM----ELEDKKFFFYVLMMA 92
Cdd:MTH00044 26 ISISQSSLISLLSLFLlnnHWSSSW-HNLSLSLATDSLSSPLIILSCWLAPLSLLASINHLsnnsPNNQRTFISLIIIIL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 93 LLLSLCFSCLNLLGFFLFFESVLFPIIMMIFKWGVQPERLQAGIYMLFYTLFGSMPLFIFLL---FSKSSLDFLFLYFEK 169
Cdd:MTH00044 105 TALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLPLLISLIaiySSSSSLSIPLSELNW 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 170 IYYNNFVFFMI-----VVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYR-FKIFYIKNLMEFSSWVM 243
Cdd:MTH00044 185 LTSLSSNSSSIwwifcILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRlINLFSLPSANNISFILI 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 244 SVCLVGGVYISMVCLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSV 323
Cdd:MTH00044 265 VFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALFCLANILYERSGTRTL 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 324 ILLKGVGFIFPFLSMWWFFFCVINMAAPPSMNLLGEILLMGSMLKYSFFLLFPLCFISFFSASFSLYMYSYTQHGK--GW 401
Cdd:MTH00044 345 SITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGLATVFGAIYSLLIYQLTNSGSfpSW 424
|
410 420
....*....|....*....|....*
gi 1016841412 402 cIFSVNGILMREYFLMFLHFFPLVL 426
Cdd:MTH00044 425 -ISNVSPISSREHLLIFLHLLPLIL 448
|
|
| ND4 |
MTH00206 |
NADH dehydrogenase subunit 4; Provisional |
23-434 |
1.32e-84 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214458 [Multi-domain] Cd Length: 450 Bit Score: 266.42 E-value: 1.32e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 23 SFLISIFFLMILVDWEGLWMNYVGGLFGLDLMGFNLVMLSMWISMLMIIASFKKMELEDKK----FFFYVLMMALLLSLC 98
Cdd:MTH00206 29 SFLIALLFLLWFKWSSEVGWSFSNLYLSYDPLSSPLVILSCWLLPLMFLASQNHMKNEPINrqriYITLLIVLQLFLILF 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 99 FSCLNLLGFFLFFESVLFPIIMMIFKWGVQPERLQAGIYMLFYTLFGSMPLFIFLLFSKSSLDFLFLYFE-----KIYYN 173
Cdd:MTH00206 109 FSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLFLQNSLGSLSLYILyfsklTTWNN 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 174 NFVFFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKIFYIKNLMEFSSWVMSVCLVGGVYI 253
Cdd:MTH00206 189 NLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILILGPSTKLSSYFFIILGLWGSIMT 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 254 SMVCLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVGFIF 333
Cdd:MTH00206 269 SSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCLANLLYERSHTRTILGNRGLQMIL 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 334 PFLSMWWFFFCVINMAAPPSMNLLGEILLMGSMLKYSFFLLFPLCFISFFSASFSLYMYSYTQHGKG-WCIFSVNGILMR 412
Cdd:MTH00206 349 PLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLYMFVMTQHGKTpNHLLSLSPSSTR 428
|
410 420
....*....|....*....|..
gi 1016841412 413 EYFLMFLHFFPLVLWVMKMELV 434
Cdd:MTH00206 429 EHLLLFLHLFPVILLILNPNLI 450
|
|
| ND4 |
MTH00124 |
NADH dehydrogenase subunit 4; Provisional |
23-435 |
6.69e-82 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214427 [Multi-domain] Cd Length: 457 Bit Score: 259.36 E-value: 6.69e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 23 SFLISIFFLMILVDWEGLwMNYVGGLFGLDLMGFNLVMLSMWISMLMIIASFKKMELE---DKKFFFYVLMMALLLSLCF 99
Cdd:MTH00124 31 SLLIALLSLQWLKPPYYP-TKNLTQWLGIDQISAPLLVLSCWLLPLMILASQNHLQHEplqRKRTFLTTLILLQTFLILA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 100 SCLN-LLGFFLFFESVLFPIIMMIFKWGVQPERLQAGIYMLFYTLFGSMPLFIFLLFSKSSLDFLFLYFEKIYY------ 172
Cdd:MTH00124 110 FSATeLTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPLLIAILYLHNQTGTLSLPMLQLTHptltns 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 173 --NNFVFFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKIFYIKNLMEFSSWVMSVCLVGG 250
Cdd:MTH00124 190 wtNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGA 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 251 VYISMVCLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVG 330
Cdd:MTH00124 270 LMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQ 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 331 FIFPFLSMWWFFFCVINMAAPPSMNLLGEILLMGSMLKYSFFLLFPLCFISFFSASFSLYMYSYTQHGKgwciFSVNGIL 410
Cdd:MTH00124 350 LLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLATLITASYTLYMFLSTQRGT----LPTHITT 425
|
410 420 430
....*....|....*....|....*....|
gi 1016841412 411 M-----REYFLMFLHFFPLVLWVMKMELVT 435
Cdd:MTH00124 426 IqpthtREHLLMTLHIIPLLLLILKPELIS 455
|
|
| ND4 |
MTH00068 |
NADH dehydrogenase subunit 4; Provisional |
23-438 |
1.71e-81 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214417 [Multi-domain] Cd Length: 458 Bit Score: 258.31 E-value: 1.71e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 23 SFLISIFFLMILVDWEGLwMNYVGGLFGLDLMGFNLVMLSMWISMLMIIASFKKMELE-DKKFFFYVLMMALLLSLCFSC 101
Cdd:MTH00068 31 SLIIAFLSLMWFNLPSET-MNFTNKYFGIDQISSPLLILTCWLLPLMILASQNHLKNEpINRQRTYISMLIILQLTLILA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 102 LN---LLGFFLFFESVLFPIIMMIFKWGVQPERLQAGIYMLFYTLFGSMPLFIFLLFSKSSLDFLFLYFEKI-------- 170
Cdd:MTH00068 110 FSateLILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPLLIALLILQNSLGSLSLILLELmspmqlmt 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 171 YYNNFVFFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKIFYIKNLMEFSSWVMSVCLVGG 250
Cdd:MTH00068 190 YTNKIWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGILRISILLTPLSKELSYPFIILALWGV 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 251 VYISMVCLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVG 330
Cdd:MTH00068 270 LMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHGLTSSALFCLANTNYERTHSRTLLLLRGAQ 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 331 FIFPFLSMWWFFFCVINMAAPPSMNLLGEILLMGSMLKYSFFLLFPLCFISFFSASFSLYMYSYTQHGK-GWCIFSVNGI 409
Cdd:MTH00068 350 TILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGTLITAAYTLYMFLMTQRGPlPNHLKTLFPT 429
|
410 420
....*....|....*....|....*....
gi 1016841412 410 LMREYFLMFLHFFPLVLWVMKMELVTSWL 438
Cdd:MTH00068 430 YTREHLLLALHILPMLLLILKPELISGMF 458
|
|
| ND4 |
MTH00110 |
NADH dehydrogenase subunit 4; Provisional |
21-426 |
2.70e-76 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177172 [Multi-domain] Cd Length: 459 Bit Score: 245.19 E-value: 2.70e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 21 MVSFLISIFFLMILVDWEGLWMNYvGGLFGLDLMGFNLVMLSMWISMLMIIAS---FKKMELEDKKFFFYVL-MMALLLS 96
Cdd:MTH00110 29 TYSLLISLISLLLLNQPNDNSLNF-SLLFFSDSLSTPLLILTTWLLPLMLMASqhhLSKEPLTRKKLYITMLiLLQLFLI 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 97 LCFSCLNLLGFFLFFESVLFPIIMMIFKWGVQPERLQAGIYMLFYTLFGSMPLFIFLLFSKS---SLDFLFLYF-----E 168
Cdd:MTH00110 108 MTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLYIQNnlgSLNFLLLQLwaqplP 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 169 KIYYNNFVFFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKIFyIKNLMEFSSW-VMSVCL 247
Cdd:MTH00110 188 NSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMMRITII-LNPLTEFMAYpFLMLSL 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 248 VGGVYISMVCLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLK 327
Cdd:MTH00110 267 WGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILAR 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 328 GVGFIFPFLSMWWFFFCVINMAAPPSMNLLGEILLMGSMLKYSFFLLFPLCFISFFSASFSLYMYSYTQHGK-GWCIFSV 406
Cdd:MTH00110 347 GLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNMLITALYSLYMLITTQRGKlTHHINNI 426
|
410 420
....*....|....*....|
gi 1016841412 407 NGILMREYFLMFLHFFPLVL 426
Cdd:MTH00110 427 KPSFTRENTLMALHLLPLLL 446
|
|
| ND4 |
MTH00127 |
NADH dehydrogenase subunit 4; Provisional |
23-437 |
3.97e-70 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177186 [Multi-domain] Cd Length: 459 Bit Score: 229.07 E-value: 3.97e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 23 SFLISIFFLMILVDWEGLWMNYVGGLFGLDLMGFNLVMLSMWISMLMIIASFKKMELE----DKKFFFYVLMMALLLSLC 98
Cdd:MTH00127 31 SLLIALASLTWLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILASQNHTAPEpinrQRMYITLLTSLQIFLILA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 99 FSCLNLLGFFLFFESVLFPIIMMIFKWGVQPERLQAGIYMLFYTLFGSMPLFIFLLF---SKSSLDFLFLYFEKI----- 170
Cdd:MTH00127 111 FGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLlqnSTGTLSMLTLQYSQPlqlss 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 171 YYNNFVFFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKIFYIKNLMEFSSWVMSVCLVGG 250
Cdd:MTH00127 191 WADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGI 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 251 VYISMVCLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVG 330
Cdd:MTH00127 271 IMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQ 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 331 FIFPFLSMWWFFFCVINMAAPPSMNLLGEILLMGSMLKYSFFLLFPLCFISFFSASFSLYMYSYTQHGKGWC-IFSVNGI 409
Cdd:MTH00127 351 MILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLGTLITAGYSLYMFLMTQRGPLPDhIIALNPS 430
|
410 420
....*....|....*....|....*...
gi 1016841412 410 LMREYFLMFLHFFPLVLWVMKMELVTSW 437
Cdd:MTH00127 431 HTREHLLMALHLLPLLLLILKPELIWGW 458
|
|
| ND4 |
MTH00217 |
NADH dehydrogenase subunit 4; Provisional |
29-372 |
4.53e-46 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214462 [Multi-domain] Cd Length: 482 Bit Score: 166.00 E-value: 4.53e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 29 FFLMILVDWEGLWMNYVG-GLFGLDLMGFNLVMLSMWISMLMIIASFKKMELEDKKFFFYVLMMALLLSLCFSCLNLLGF 107
Cdd:MTH00217 55 FQAIKKFEWIPGIEPVFGpVVFAVDGISIFFLILTALLTPICILISWNSIKFLIKEFLLCLLVIEILLMGVFTILDLVGF 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 108 FLFFESVLFPIIMMIFKWGVQPERLQAGIYMLFYTLFGS--MPLFIFLLFSKS-SLDFLFLYFEKI--YYNNFVFFMIVV 182
Cdd:MTH00217 135 YILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSvfMLLGIFTLYSYAgTTDYQALCCLKIekELQYFIFLGFFL 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 183 AFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKIFYIKNLME-FSSWVMSVCLVGGVYISMVCLVQV 261
Cdd:MTH00217 215 SLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEASEyFSPLIQTLSLLAIIYGSLTTCRQV 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 262 DLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVGFIFPFLSMWWF 341
Cdd:MTH00217 295 DLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILML 374
|
330 340 350
....*....|....*....|....*....|.
gi 1016841412 342 FFCVINMAAPPSMNLLGEILLMGSMLKYSFF 372
Cdd:MTH00217 375 LLVLANASIPLSCNFVGEFLSLLAAFEYSYI 405
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
49-373 |
2.59e-45 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 163.71 E-value: 2.59e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 49 FGLDLMGFNLVMLSMWISMLMIIASFKKMELEDKKFFFYVLMMALLLSLCFSCLNLLGFFLFFESVLFPIIMMIFKWGvQ 128
Cdd:COG1008 78 LGVDGISLPLVLLTALLTPLAILASWNEIKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWG-G 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 129 PERLQAGIYMLFYTLFGSMPL---FIFLLFSKSSLDFLFLYFEKIYYN----NFVFFMIVVAFFVKIPMFIFHLWLPKAH 201
Cdd:COG1008 157 ERRIYAAIKFFLYTLAGSLLMlvaILALYFLAGALTFDIAELAAAPLPltaqLLLFLAFFIAFAVKVPMFPFHTWLPDAH 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 202 VEAPIGGSMILAGVLLKLGIFGLYRFKIFYIKN-LMEFSSWVMSVCLVGGVYISMVCLVQVDLKSLIAYSSVCHMSLALG 280
Cdd:COG1008 237 VEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 281 GFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVGFIFPFLSMWWFFFCVINMAAPPSMNLLGEI 360
Cdd:COG1008 317 GIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEF 396
|
330
....*....|...
gi 1016841412 361 LLMGSMLKYSFFL 373
Cdd:COG1008 397 LVLLGAFQVNPWL 409
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
50-365 |
3.78e-42 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 155.36 E-value: 3.78e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 50 GLDLMGFNLVMLSMWISMLMIIASFKKMELEDKKFFFYVLMMALLLSLCFSCLNLLGFFLFFESVLFPIIMMIFKWGvQP 129
Cdd:PRK05846 79 GVDGISLLLVVLTALLTPLAVLASWEEIKKRVKFYMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWG-GK 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 130 ERLQAGIYMLFYTLFGS--MPLFIFLLFSKS-----SLDFLFLYFEKIYYN--NFVFFMIVVAFFVKIPMFIFHLWLPKA 200
Cdd:PRK05846 158 NRIYAATKFFLYTLLGSllMLVAIIYLVVVYynatgTFDIADLLNLPLPPGvqYWLFLAFFIAFAVKMPMFPLHTWLPDA 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 201 HVEAPIGGSMILAGVLLKLGIFGLYRFKI-FYIKNLMEFSSWVMSVCLVGGVYISMVCLVQVDLKSLIAYSSVCHMSLAL 279
Cdd:PRK05846 238 HVQAPTAGSVLLAGILLKMGAYGLLRFSLpLFPDASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVT 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 280 GGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVGFIFPFLSMWWFFFCVINMAAPPSMNLLGE 359
Cdd:PRK05846 318 LGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGE 397
|
....*..
gi 1016841412 360 IL-LMGS 365
Cdd:PRK05846 398 FLiLLGS 404
|
|
| ND4 |
MTH00204 |
NADH dehydrogenase subunit 4; Provisional |
29-373 |
1.60e-41 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 164750 [Multi-domain] Cd Length: 485 Bit Score: 153.68 E-value: 1.60e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 29 FFLMILVDW---EGLWMNYVGGLFGLDLMGFNLVMLSMWISMLMIIASFKKMELEDKKFFFYVLMMALLLSLCFSCLNLL 105
Cdd:MTH00204 56 FQFINLIEWiisPTLNFQWGPLVFAVDGVSLFFILLTTLLIPICILISWKSIKFLFKEFLLCLLFLEVLLIGVFSVLDLL 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 106 GFFLFFESVLFPIIMMIFKWGVQPERLQAGIYMLFYTLFGS--MPLFIFLLFSKS-SLDFLFLYFEKIYYN--NFVFFMI 180
Cdd:MTH00204 136 LFYILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSvfMLLGIFQLYSITgTTDYQILLNIKLPLSiqKWLLVGF 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 181 VVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKIFYIKNLME-FSSWVMSVCLVGGVYISMVCLV 259
Cdd:MTH00204 216 FLSLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEyFAPLIVMLSVIAVIYGSLTTCR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 260 QVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVGFIFPFLSMW 339
Cdd:MTH00204 296 QVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVII 375
|
330 340 350
....*....|....*....|....*....|....
gi 1016841412 340 WFFFCVINMAAPPSMNLLGEILLMGSMLKYSFFL 373
Cdd:MTH00204 376 MLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGL 409
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
50-365 |
2.25e-39 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 147.39 E-value: 2.25e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 50 GLDLMGFNLVMLSMWISMLMIIASFKKMELEDKKFFFYVLMMALLLSLCFSCLNLLGFFLFFESVLFPIIMMIFKWGvQP 129
Cdd:TIGR01972 74 GVDGISLLLVLLTALLTLLAILASWESIQKRVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWG-GP 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 130 ERLQAGIYMLFYTLFGS--MPLFIFLLFSKSSLDF-LFLYFEKIYYNN---FVFFMIVVAFFVKIPMFIFHLWLPKAHVE 203
Cdd:TIGR01972 153 NRIYAAMKFFLYTLAGSllMLLAILGLYFLGGGTFdLLELLNLPLPFGvqtWLFLAFFIAFAVKVPLFPLHTWLPDAHVE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 204 APIGGSMILAGVLLKLGIFGLYRFKIFYIKNLM-EFSSWVMSVCLVGGVYISMVCLVQVDLKSLIAYSSVCHMSLALGGF 282
Cdd:TIGR01972 233 APTAGSVILAGVLLKMGTYGFLRFNLPLFPDASlYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGI 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 283 LSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVGFIFPFLSMWWFFFCVINMAAPPSMNLLGEIL- 361
Cdd:TIGR01972 313 FSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLi 392
|
....
gi 1016841412 362 LMGS 365
Cdd:TIGR01972 393 LLGS 396
|
|
| ND4 |
MTH00226 |
NADH dehydrogenase subunit 4; Provisional |
48-378 |
1.64e-38 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214466 [Multi-domain] Cd Length: 505 Bit Score: 145.83 E-value: 1.64e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 48 LFGLDLMGFNLVMLSMWISMLMIIASFKKMELEDKKFFFYVLMMALLLSLCFSCLNLLGFFLFFESVLFPIIMMIFKWGV 127
Cdd:MTH00226 97 VFAVDGISIYFIILTGFIVPCSILISWHSVKYLTKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGIWGS 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 128 QPERLQAGIYMLFYTLFGS--MPLFIFLLFS-KSSLDFLFL----YFEKIYYNNFVFFMIVVAFFVKIPMFIFHLWLPKA 200
Cdd:MTH00226 177 REEKMQAAYYFFFYTLIGSvlMLLCLFSLYNiHGTTDYLTLascsHVVSEQTQKWIFLGIFLAMAVKIPIFPFHIWLPKA 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 201 HVEAPIGGSMILAGVLLKLGIFGLYRFKIFYIK-NLMEFSSWVMSVCLVGGVYISMVCLVQVDLKSLIAYSSVCHMSLAL 279
Cdd:MTH00226 257 HVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPlGAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVS 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 280 GGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVGFIFPFLSMWWFFFCVINMAAPPSMNLLGE 359
Cdd:MTH00226 337 ITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGE 416
|
330
....*....|....*....
gi 1016841412 360 ILLMGSMLKYSFFLLFPLC 378
Cdd:MTH00226 417 YLSILSSFNWNPIIGVFVC 435
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
112-374 |
2.20e-38 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 140.53 E-value: 2.20e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 112 ESVLFPIIMMIFKWGVQPERLQAGIYMLFYTLFGSMPLF--IFLLFSKS---SLDFLFLYFEKIYYN---NFVFFMIVVA 183
Cdd:pfam00361 12 EAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLfgISLMYNYTgtlSFDELSKALTGGLNSsglLLLFLLILVG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 184 FFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKIFYIKNLMEFSSWVMSVCLVGGVYISMVCLVQVDL 263
Cdd:pfam00361 92 FLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDI 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 264 KSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLA-NIMYERFFTRSVILLKGVGFIFPFLSMWWFF 342
Cdd:pfam00361 172 KRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLV 251
|
250 260 270
....*....|....*....|....*....|..
gi 1016841412 343 FCVINMAAPPSMNLLGEILLMGSMLKYSFFLL 374
Cdd:pfam00361 252 AMLSLAGLPPTAGFLGKFLILAAAVAASWIFL 283
|
|
| ND4 |
MTH00094 |
NADH dehydrogenase subunit 4; Provisional |
65-422 |
7.14e-31 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177157 [Multi-domain] Cd Length: 403 Bit Score: 122.71 E-value: 7.14e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 65 ISMLMIIASFKKMELEDKKFFFYVLMMALLLSLCFSCLNLLGFFLFFESVLFPIIMMIFKWGVQPERLQAGIYMLFYTLF 144
Cdd:MTH00094 45 IFMMVFILGLVLLSEKNFNLLILSNLLILICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAF 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 145 GSMPlfiFLLFSKSSLDFLFLYFEKIYYNNFVFFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGL 224
Cdd:MTH00094 125 FSFP---FLFVYLKNFFFFSLCYFDFFLSWEMFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGF 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 225 YRFKIFYIKNLMEFSswvMSVCLVGGVYISMVCLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCS 304
Cdd:MTH00094 202 LRILGSLNFVYNNFW---IIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTS 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 305 SGLFCLANIMYERFFTRSVILLKGVGFIFPFLSMWWFFFCVINMAAPPSMNLLGEILLMGSMLKYSFFLLFPLCFISFFS 384
Cdd:MTH00094 279 TLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVS 358
|
330 340 350
....*....|....*....|....*....|....*...
gi 1016841412 385 ASFSLYMYSYTQHGKGWCIFSVNGILMREYFLMFLHFF 422
Cdd:MTH00094 359 FYYSLFLIVSSFMGKKFSNFNNFNVGLSLPLVFMMFNM 396
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
50-334 |
5.04e-27 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 113.20 E-value: 5.04e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 50 GLDLMGFNLVMLSMWISMLMIIASFKkMELEDKKFFFYVLMMALLLSLCFSCLNLLGFFLFFESVLFPIIMMIFKWGVQp 129
Cdd:PRK12561 56 GVDGLSMPLVLLSGLITTLSIFASWK-VTRKPRLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLISIWGGQ- 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 130 ERLQAGIYMLFYTLFGSmpLFIF---LLFSKSSLDFLF-----------LYFEKIYYNNFVffmivVAFFVKIPMFIFHL 195
Cdd:PRK12561 134 KRLYAATKFILYTALAS--IFILvagLALALSGDTFTFdlaelgaksypLALELLLYAGFL-----IAFGVKLPIFPLHT 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 196 WLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKIFYIKNL-MEFSSWVMSVCLVGGVYISMVCLVQVDLKSLIAYSSVCH 274
Cdd:PRK12561 207 WLPDAHGEASAPVSMILAGVLLKMGGYALIRFNVQMLPDAhVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSH 286
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 275 MSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVGFIFP 334
Cdd:PRK12561 287 MGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMP 346
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
176-377 |
7.99e-22 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 97.14 E-value: 7.99e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 176 VFFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFK--IFYIKNLMEFSSWVMSVCLVGGVYI 253
Cdd:COG0651 207 AFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLtlLFGADPALFLGTLLLVLGLLTMLVG 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 254 SMVCLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVGFIF 333
Cdd:COG0651 287 ALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRM 366
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1016841412 334 PFLsMWWFFFCVINMAA-PPSMNLLGEILLMGSMLKYSFFLLFPL 377
Cdd:COG0651 367 PLT-AAAFLIGALALAGlPPLSGFVSKWLLLQAALEAGAWLLAAV 410
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
50-328 |
1.17e-21 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 97.08 E-value: 1.17e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 50 GLDLMGFNLVMLSmwiSMLMIIASFKKMELEDKKFFFY--VLMMALLLSLCFSCLNLLGFFLFFESVLFPIIMMIFKWGV 127
Cdd:PRK06473 76 GVDGLSLPLLVLN---SLLTLIAIYSSDESIQRPRFYYslLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGG 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 128 QPERLQAGIYMLFYTLFGSMPLFIFL----LFSKSSLDFLFLYFEKIYYNNFVFFM--IVVAFFVKIPMFIFHLWLPKAH 201
Cdd:PRK06473 153 QRRGYAATKFLLYTAISGILILVSFLglvwLSGASSFDYEPLRSHTLPLSTQLLLLapILVGFGIKIPLVPFHTWLPDAH 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 202 VEAPIGGSMILAGVLLKLGIFGLYRFKI-FYIKNLMEFSSWVMSVCLVGGVYISMVCLVQVDLKSLIAYSSVCHMSLALG 280
Cdd:PRK06473 233 VEASTPVSVLLAGVLLKLGTYGLLRFGVgLFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILL 312
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1016841412 281 GFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKG 328
Cdd:PRK06473 313 AAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRG 360
|
|
| ND4 |
MTH00062 |
NADH dehydrogenase subunit 4; Provisional |
11-378 |
6.17e-21 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214413 [Multi-domain] Cd Length: 417 Bit Score: 94.22 E-value: 6.17e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 11 LFWMVLPLDVMVSFLISIFFLMILVDWEGLWMNYVGGLFGLDLMGFNLVMLSMWISMLMIIASFkkMELEDKKFFFYVLM 90
Cdd:MTH00062 3 FFSVGFFLGFLLLLLFCLLYSSGVGCCILVVNNVFNGLFIFDSLSFYLILLVLFLGLYSQVMFY--NLLSGVSRFFLFLS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 91 MaLLLSLCFSCLNLLGFFLFFESVLFPIIMMIFKWGVQPERLQAGIYMLFYTLFGSMPLFIFLLF-SKSSLDFLFLYFEK 169
Cdd:MTH00062 81 L-IFSILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYlSLVNGSFNFSDWGS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 170 IYYNNF-VFFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKIFYiknLMEFSSWVMSVCLV 248
Cdd:MTH00062 160 DDSVSLiVYYVLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFI---FSGSFLGYLFLCCL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 249 GGVYISMVCLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKG 328
Cdd:MTH00062 237 FSVFFLITACSELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKS 316
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1016841412 329 vGFIFPFLSMWWFFFCVINMAA-PPSMNLLGEILLMGSMLKYSFFLLFPLC 378
Cdd:MTH00062 317 -GINGSLVLRVIVVFSFLSLCSfPPTIQFFCEVFLVSSSFGVLVYLLFWCF 366
|
|
| ndhD |
CHL00011 |
NADH dehydrogenase subunit 4 |
115-325 |
5.94e-20 |
|
NADH dehydrogenase subunit 4
Pssm-ID: 176954 [Multi-domain] Cd Length: 498 Bit Score: 91.93 E-value: 5.94e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 115 LFPIIMMIFKWGVQpERLQAGIYMLFYTLFGSMPLFIFLL------FSKSSLDFLFLY-------FEKIYYNNFVffmiv 181
Cdd:CHL00011 145 LIPVYLLLSMWGGK-KRLYSATKFILYTAGGSIFLLIGVLgmglygSNEPTLNFETLAnqsypvaLEILFYIGFL----- 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 182 VAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKIFYIKNLME-FSSWVMSVCLVGGVYISMVCLVQ 260
Cdd:CHL00011 219 IAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSiFSPWLVIVGAIQIIYAASTSLGQ 298
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1016841412 261 VDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERffTRSVIL 325
Cdd:CHL00011 299 RNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDR--IRLVYL 361
|
|
| PRK02546 |
PRK02546 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
50-330 |
6.72e-20 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 235050 [Multi-domain] Cd Length: 525 Bit Score: 92.08 E-value: 6.72e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 50 GLDLMGFNLVMLSMWISMLMIIASFKkMELEDKKFFFYVLMMALLLSLCFSCLNLLGFFLFFESVLFPIIMMIFKWGVQp 129
Cdd:PRK02546 84 GADGLSMPLILLTGFITTLAVLAAWP-VTFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGK- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 130 ERLQAGIYMLFYTLFGSmpLFIFLL-----FSKSSLDFLFLYF-EKIYYNNFVFFM---IVVAFFVKIPMFIFHLWLPKA 200
Cdd:PRK02546 162 KRQYAATKFILYTAGSS--LFILLAalamaFYGDTPTFDMTALaAKDFGLGFQLLCyagLLIAYGVKLPIVPLHTWLPDA 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 201 HVEAPIGGSMILAGVLLKLGIFGLYRFKIFYIKNL-MEFSSWVMSVCLVGGVYISMVCLVQVDLKSLIAYSSVCHMSLAL 279
Cdd:PRK02546 240 HGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAhAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVL 319
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1016841412 280 GGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVG 330
Cdd:PRK02546 320 IGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVG 370
|
|
| PRK07363 |
PRK07363 |
NADH-quinone oxidoreductase subunit M; |
115-329 |
3.94e-16 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 180945 [Multi-domain] Cd Length: 501 Bit Score: 80.14 E-value: 3.94e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 115 LFPIIMMIFKWGVQpERLQAGIYMLFYTLF-GSMPLFIFL----LFSKSSLDFLFLYFEKIYYNN--FVFFMIVVAFFVK 187
Cdd:PRK07363 140 LIPFYLLIAIWGGE-KRGYASIKFLIYTAVsGLLVLAAFLgivwLSGSTSFDYDAISTQNLSLNTqlILLTGLLLGFGIK 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 188 IPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKI-FYIKNLMEFSSWVMSVCLVGGVYISMVCLVQVDLKSL 266
Cdd:PRK07363 219 IPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFGLqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRM 298
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1016841412 267 IAYSSVCHM-----SLALGGFLSLnywggLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGV 329
Cdd:PRK07363 299 VAYSSIGHMgyilvAAAAGTQLSL-----LGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGL 361
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
176-336 |
1.14e-14 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 75.69 E-value: 1.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 176 VFFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFkIFYIKNLMEFSSWVMSVCLVGGVYISM 255
Cdd:PRK08375 204 AFGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRI-YFTVFGGDFRFALGLGWLLAVLALLSM 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 256 V-----CLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVG 330
Cdd:PRK08375 283 LvgslaALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLG 362
|
....*.
gi 1016841412 331 FIFPFL 336
Cdd:PRK08375 363 RRMPLT 368
|
|
| PRK06458 |
PRK06458 |
hydrogenase 4 subunit F; Validated |
175-378 |
5.74e-14 |
|
hydrogenase 4 subunit F; Validated
Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 73.43 E-value: 5.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 175 FVFfmIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKIFYIKNLM-EFSSWVMSV-CLVGGVY 252
Cdd:PRK06458 217 FVF--LLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDAAIGsDFPGRLLLIfGLLSVLV 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 253 ISMVCLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVGFI 332
Cdd:PRK06458 295 AAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKV 374
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1016841412 333 FPFLSmWWFFFCVINMA-APPSMNLLGEILLMGSMLKYSFFLLFPLC 378
Cdd:PRK06458 375 SPLTG-WGLMLGALAIAgMPPFGVFISEFLILTAGLARGPLLIAILL 420
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
181-374 |
3.85e-12 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 68.07 E-value: 3.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 181 VVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRF--KIFYIKN-LMEFSSWVMSVCL----VGGVYI 253
Cdd:PRK12667 230 LWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFlyTIFGISPsLIDFRAALSPILIilgaVSAIIG 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 254 SMVCLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVGFIF 333
Cdd:PRK12667 310 ALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKM 389
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1016841412 334 PFLSMWWFFFCVINMAAPPSMNLLGEILLMGSMLKYSFFLL 374
Cdd:PRK12667 390 PIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLP 430
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
177-318 |
5.40e-08 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 54.76 E-value: 5.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 177 FFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRfkIFYIKNLMEFSSWVMSVCLVGGVY-ISM 255
Cdd:PRK08676 209 FLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILR--LSALLRQSGAAEQFSNVLIGLGIFsIAV 286
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1016841412 256 VC---LVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERF 318
Cdd:PRK08676 287 AAfsmLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQY 352
|
|
| PRK08667 |
PRK08667 |
hydrogenase membrane subunit; Validated |
175-377 |
1.79e-07 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 236331 [Multi-domain] Cd Length: 644 Bit Score: 53.58 E-value: 1.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 175 FVFFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFkifyiknLMEFSS----WVMSVCLVG- 249
Cdd:PRK08667 206 LVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRF-------LMDVLSpelwWGVLILLAGs 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 250 --GVYISMVCLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWG--GLGSLLMM---------LGHGLCSSGLFCLANIMYE 316
Cdd:PRK08667 279 isALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGvyGLDTLALLalggalfhsLNHALFKSLLFLTAGSVVH 358
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1016841412 317 RFFTRSVILLKGVGFIFPFLSMWWFFFCVINMAAPPSMNLLGEILLMGSMLKySFFLLFPL 377
Cdd:PRK08667 359 ATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESFFQ-SFSVADPL 418
|
|
| PRK07234 |
PRK07234 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
175-320 |
2.75e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235978 [Multi-domain] Cd Length: 470 Bit Score: 52.65 E-value: 2.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 175 FVFFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKIFyiknLMEFSSWVMSVCLVGGVYIS 254
Cdd:PRK07234 185 EAFALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALD----VPGLDLIVRIFGVGTALLGV 260
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1016841412 255 MVCLVQVDLKSLIAYSSVCHMSLALGGFLslnyWGGLGSllmmLGHGLCSSGLFCLANIMYERFFT 320
Cdd:PRK07234 261 LFALLEKDLKRMLAFSTISQLGFILAAPL----VGGLYA----LAHGLVKSTLFLCAGALPSRNFT 318
|
|
| PRK06521 |
PRK06521 |
hydrogenase 4 subunit B; Validated |
176-282 |
3.10e-07 |
|
hydrogenase 4 subunit B; Validated
Pssm-ID: 235820 [Multi-domain] Cd Length: 667 Bit Score: 52.58 E-value: 3.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 176 VFFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKIfyikNLMEFSSW-----VMSVCLVGG 250
Cdd:PRK06521 212 VFLLALFGFGAKAGLVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRVVF----DLLGAPGWwwgvlVLALGAISA 287
|
90 100 110
....*....|....*....|....*....|..
gi 1016841412 251 VYISMVCLVQVDLKSLIAYSSVCHMSLALGGF 282
Cdd:PRK06521 288 VLGVLYALAEHDLKRLLAYSTIENIGIIFVGL 319
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
8-308 |
3.31e-06 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 49.22 E-value: 3.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 8 ILGLFWMVLPLdvmvSFLISIFFLMILVDWEGLWMNYVG--GLFGLDLMGFNLVMLSMWISMLMIIASFKKMELEDKKFF 85
Cdd:PRK08668 26 KIGVIGNALPL----LFLIKLYFTLKVGTGEKLTLFFGGfkLTFTLTHLSWFFAMISLLVIFSVAFFMVSEKTKNDAYFN 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 86 FYVLMMALLLSLCFSCLNLLGFFLFFESVLFPIIMMIFKwGVQPERLQAGIYMLFYTLFGSMPLF-IFLLFSKS-SLDF- 162
Cdd:PRK08668 102 MFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPM-GKKESRKASLKYFVLSAIGAYAMLYaIFLIYAKTgTFDFa 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 163 ----LFLYFEKIYYNNFVFFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLY--RFKIFYIKNLM 236
Cdd:PRK08668 181 disqGLINDTSTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLlvLYVLPGTKLFS 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 237 EFSSwVMSVCLVGGVYI----------SMVCLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSG 306
Cdd:PRK08668 261 EFGT-YRGVPLFNYILAwlgnisiivgTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGL 339
|
..
gi 1016841412 307 LF 308
Cdd:PRK08668 340 FF 341
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
175-337 |
1.19e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 47.50 E-value: 1.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 175 FVFFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYR-----FKIFYIKNLMEFSSWVMSVCLVG 249
Cdd:PRK06589 211 IILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKillyiFGLSYLQRIFAEFNWLIFIPIVS 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 250 GVYISMVCLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGV 329
Cdd:PRK06589 291 IFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGT 370
|
....*...
gi 1016841412 330 GFIFPFLS 337
Cdd:PRK06589 371 SKSFPLIS 378
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
129-350 |
1.22e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 47.40 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 129 PERLQAGI-YMLFYTLFGSMPLF-IFLLFSKSSLDFLFLYFEKIYYNNFVFFMIVVAFFV-----KIPMFIFHLWLPKAH 201
Cdd:PRK08376 168 WEAIEAGIkYMFVGSLASSMVLLgIALLYGQYGTLNMAYLAVKMSENPTVVAKIALALFIaglamKSGAVPVHMWLPDAY 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 202 VEAPIGGSMILAgVLLKLGIFGLYR--FKIFYIKNLMEFSSWVMSV--CLVGGVYISMVcLVQVDLKSLIAYSSVC---H 274
Cdd:PRK08376 248 PAAPSSISAMLL-VIKQAGLYALARvlFSIYGPAINLATVGWVIIIlgCLTMFVGVAMA-VVQKDVKRLLAYHSVSqigY 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 275 MSLALG------GFLSLNYWGGL---GSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVGFIFPflsmWWFFFCV 345
Cdd:PRK08376 326 MLLGLGvglaalGDPAMASYGEIalaGGIYHIVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMP----KTTIAFL 401
|
....*
gi 1016841412 346 INMAA 350
Cdd:PRK08376 402 IGAAA 406
|
|
| PRK12662 |
PRK12662 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
163-373 |
1.30e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 183662 [Multi-domain] Cd Length: 492 Bit Score: 47.42 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 163 LFLYFEKIYYNNFV---FFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYR-----FKIFYIKN 234
Cdd:PRK12662 195 MFLIIQDLPTNRAIqigVLFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRivydvFKANFVFT 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 235 LMEFSSWVMSVCLVGGVYISMVCLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIM 314
Cdd:PRK12662 275 TLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSI 354
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1016841412 315 YERFFTRSVILLKGVGFIFPFLSMWWFFFCVINMAAPPSMNLLGEILLMGSMLKYSFFL 373
Cdd:PRK12662 355 SYHFGTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWI 413
|
|
| PRK12646 |
PRK12646 |
DUF4040 family protein; |
175-334 |
1.31e-05 |
|
DUF4040 family protein;
Pssm-ID: 183646 [Multi-domain] Cd Length: 800 Bit Score: 47.44 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 175 FVFFMIVVAFFVKIPMFIFHLWLPKAhVEAPIGGSMIL-AGVLLKLGIFGLYRFkifyiKNLMEFSSW----VMSVCLVG 249
Cdd:PRK12646 211 PMIFMFLLGAFTKSAQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAGIFLLFRF-----TPLLGLSNMyiyiVTFVGLIT 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 250 GVYISMVCLVQVDLKSLIAYSSVCHMSL-----ALGGFLSLNYWGGL---------GSLLMMLGHGLCSSGLFCLANIMY 315
Cdd:PRK12646 285 MLFGSITALKQWDLKGILAYSTISQLGMimamvGIGGGYAQHQQDAIasiyvfvlfAALFHLMNHAIFKCALFMGVGIID 364
|
170
....*....|....*....
gi 1016841412 316 ERFFTRSVILLKGVGFIFP 334
Cdd:PRK12646 365 HEAGTRDIRILSGMRQLFP 383
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
176-277 |
7.50e-05 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 45.03 E-value: 7.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 176 VFFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKIFYIKNLMefSSWVMSVCLVGGVYISM 255
Cdd:PRK12650 210 VAVLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVAV--WNWLLIIVGMITALMGA 287
|
90 100
....*....|....*....|...
gi 1016841412 256 VCLVQ-VDLKSLIAYSSVCHMSL 277
Cdd:PRK12650 288 VFAVQkTDLKKLTAYSTVSQLGW 310
|
|
| PRK06525 |
PRK06525 |
hydrogenase 4 subunit D; Validated |
176-342 |
1.28e-04 |
|
hydrogenase 4 subunit D; Validated
Pssm-ID: 180606 [Multi-domain] Cd Length: 479 Bit Score: 44.19 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 176 VFFMIVVAFFVKIPMFIFHLWLPKAhVEAPIGGSMIL-AGVLLKLGIFGLYRFkIFYIKNLMEFSSWVMSVCLVGGVYIS 254
Cdd:PRK06525 209 VFLGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARA-IQSMGPIPHVIGYVGAVMAIVTLLYG 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 255 MVC-LVQVDLKSLIAYSSVCH---MSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVG 330
Cdd:PRK06525 287 FLMyLPQQDMKRLLAYSTITQlgyMFFGLSLAILGSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVL 366
|
170
....*....|..
gi 1016841412 331 FIFPFLSMWWFF 342
Cdd:PRK06525 367 KKLPLVGVGFCV 378
|
|
| PRK12665 |
PRK12665 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
176-363 |
3.93e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 42.65 E-value: 3.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 176 VFFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRfkifyIKNLMeFSSWVMSVCLVGGVYISM 255
Cdd:PRK12665 211 LFAVLLVAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIR-----THTLL-FPGGGLDTLLMVVALLTM 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 256 V-----CLVQVDLKSLIAYSSVCHMSLALGGfLSLNYWGGL-GSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGV 329
Cdd:PRK12665 285 VvgilgAIAQSDIKRLLSFTLVSHIGYMVFG-IALSTVAGLsGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGL 363
|
170 180 190
....*....|....*....|....*....|....*
gi 1016841412 330 GFIFPFLSMwWFFFCVINMAA-PPSMNLLGEILLM 363
Cdd:PRK12665 364 AKASPLLAV-LFFVPALNLGGiPPFSGFIGKVALL 397
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
179-308 |
1.11e-03 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 41.34 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 179 MIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVlLKLGIFGLYrFKIFYIknLMEFSSWVMSVCLVGGVYISMV-- 256
Cdd:PRK05777 209 FLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATA-PKIAAFAVL-LRLLVV--AFGGLSEDWQQVLAIIAIASMLvg 284
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1016841412 257 ---CLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLF 308
Cdd:PRK05777 285 nlaALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTLGAF 339
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
143-374 |
1.12e-03 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 41.09 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 143 LFGSMplFIFLLFSKSSLDFLFLYFEKIYYNNFVFFM----IVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLK 218
Cdd:TIGR01770 170 LFGIS--LIYGFTGSLNFEDLLLFLSNGMLNISLLLLgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKI 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 219 LGIFGLYRFKIFYIKNLMEFSSWVMSVCLVGGVYI-SMVCLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMM 297
Cdd:TIGR01770 248 AIFAVFLRLFLYILFGFSEAWQIFLAIIAFLSMLIgNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYI 327
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1016841412 298 LGHGLCSSGLFCLANIM--YERFFTRSVILLKGVGFIFPFLSMWWFFFCVINMAAPPSMNLLGEILLMGSMLKYSFFLL 374
Cdd:TIGR01770 328 FIYALMSLGAFGVLSLLrsYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWL 406
|
|
| Oxidored_q5_N |
pfam01059 |
NADH-ubiquinone oxidoreductase chain 4, amino terminus; |
1-84 |
1.18e-03 |
|
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
Pssm-ID: 366442 [Multi-domain] Cd Length: 110 Bit Score: 38.27 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 1 MFSFLFLILGLFWMVLPLDVMVSFLISIFFLMILVDWEGLWMNYVGGLFGLDLMGFNLVMLSMWISMLMIIASFKKMELE 80
Cdd:pfam01059 9 LMLIPLTFLSKPKWLWTTSTLYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILASQKHLKSE 88
|
....
gi 1016841412 81 DKKF 84
Cdd:pfam01059 89 PNNR 92
|
|
| PRK08042 |
PRK08042 |
formate hydrogenlyase subunit 3; Reviewed |
194-370 |
4.49e-03 |
|
formate hydrogenlyase subunit 3; Reviewed
Pssm-ID: 181206 [Multi-domain] Cd Length: 593 Bit Score: 39.43 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 194 HLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKIFYIKNLMEFSSWV----MSVCLVGGVYismvCLVQVDLKSLIAY 269
Cdd:PRK08042 200 HGWVPQAHANASAPAAALFSTVVMKIGLLGILTLSLLGGNAPLWWGVALlvlgMITAFVGGLY----ALMEHNIQRLLAY 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 270 SSVCHMSLALGGF------LSLNY-----WGGLGSLLMMLGHGLCSSGLFCLANIMYERFFTRSVILLKGVGFIFPFLSM 338
Cdd:PRK08042 276 HTLENIGIILLGLgagvtgIALEQpaliaLGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISI 355
|
170 180 190
....*....|....*....|....*....|..
gi 1016841412 339 WWFFFCVINMAAPPSMNLLGEILLMGSMLKYS 370
Cdd:PRK08042 356 AMLVGLMAMAALPPLNGFAGEWVIYQSFFKLS 387
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
175-314 |
4.58e-03 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 39.33 E-value: 4.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 175 FVFFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFKIFYIKNLMEFSSWVMSVCLVggvyIS 254
Cdd:COG1007 204 LGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLAADWQLLLAVLAV----LS 279
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1016841412 255 MVC-----LVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLFCLANIM 314
Cdd:COG1007 280 MTVgnlaaLAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMNLGAFAVILLL 344
|
|
| PRK08377 |
PRK08377 |
NADH dehydrogenase subunit N; Validated |
177-308 |
5.24e-03 |
|
NADH dehydrogenase subunit N; Validated
Pssm-ID: 181406 [Multi-domain] Cd Length: 494 Bit Score: 38.98 E-value: 5.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016841412 177 FFMIVVAFFVKIPMFIFHLWLPKAHVEAPIGGSMILAGVLLKLGIFGLYRFkIFYIKNLMEFSSWVMSVCLVGG---VYI 253
Cdd:PRK08377 209 LALLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARI-LYLMQNANGWSSVLKLVIIMATltvFFA 287
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1016841412 254 SMVCLVQVDLKSLIAYSSVCHMSLALGGFLSLNYWGGLGSLLMMLGHGLCSSGLF 308
Cdd:PRK08377 288 ELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLF 342
|
|
| |
