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Conserved domains on  [gi|1098386675|gb|APA39246|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Mammuthus primigenius]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 1.47e-147

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 419.64  E-value: 1.47e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675   1 MNPLALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMY 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  81 SGQWSIMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTNLIYLSGLL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 161 SILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAM 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 241 TIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSSLTILPSTNNMKMTWQFTNT 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*..
gi 1098386675 321 KHTMMLPTLITLSNMLLPLTPMISMLE 347
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 1.47e-147

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 419.64  E-value: 1.47e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675   1 MNPLALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMY 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  81 SGQWSIMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTNLIYLSGLL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 161 SILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAM 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 241 TIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSSLTILPSTNNMKMTWQFTNT 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*..
gi 1098386675 321 KHTMMLPTLITLSNMLLPLTPMISMLE 347
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-245 3.30e-20

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 91.33  E-value: 3.30e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675   7 SLILTTLLaGTLITMMSSHWLTAWMGLEMNMLTM-IPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQWS 85
Cdd:COG1007   106 ALLLFATL-GMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  86 IMKMTNPVASNVALMALMT------------KLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTN--- 150
Cdd:COG1007   185 LAGIAAALAAGGANSPLLLlglvlvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFpgl 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 151 ----TNLIYLSGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLIIL----PFNPTLTLLNLAIYILLTLSIFMILA-- 220
Cdd:COG1007   265 aadwQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVILll 344

                         250       260
                  ....*....|....*....|....*...
gi 1098386675 221 ---NTLTTSMSSLTLMWNKTPAMTIMLM 245
Cdd:COG1007   345 srkGGEAEEIEDLAGLARRSPLLALAMT 372
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-267 4.62e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 85.83  E-value: 4.62e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  23 SSHWLTAWMGLEMNMLTMIP-ILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQWSIMKMTNPVASNVA--- 98
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  99 --------LMALMTKLGSAPFHFWVPEVTQGVELTSGMILL-TWQKLAPL-----SLLYQMATYTNTNLIYLSGLLSILI 164
Cdd:pfam00361  81 llllflliLVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 165 GGWGGLNQTQLRKILAYSSISHMGWMLIIL----PFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTL-----MWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIrdyggLAK 240

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1098386675 236 KTPAMTIMLMTTLLSLGGLPPLSGFTPKWLMI 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLIL 272
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 2.41e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 79.61  E-value: 2.41e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  14 LAGTLITMMSSHWLTAWMGLEMNMLTM-IPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQWSIMKMTNP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  93 VASNVA------------LMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQM-------ATYTNTNL 153
Cdd:TIGR01770 192 LSNGMLnisllllgivliLVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 154 IYLSGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTL----TLLNLAIYILLTLSIFMILANTLTT---- 225
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLLRSYkdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1098386675 226 --SMSSLTLMWNKTPAMTIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLI 297
Cdd:TIGR01770 352 ieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 1.47e-147

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 419.64  E-value: 1.47e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675   1 MNPLALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMY 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  81 SGQWSIMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTNLIYLSGLL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 161 SILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAM 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 241 TIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSSLTILPSTNNMKMTWQFTNT 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*..
gi 1098386675 321 KHTMMLPTLITLSNMLLPLTPMISMLE 347
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 1.04e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 333.70  E-value: 1.04e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675   1 MNPLALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMY 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  81 SGQWSIMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATyTNTNLIYLSGLL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAP-TNPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 161 SILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAM 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 241 TIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSSLTILPSTNNMKMTWQFTNT 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*.
gi 1098386675 321 KHTMMLPTLITLSNMLLPLTPMISML 346
Cdd:MTH00135  320 QLTLPLAISTTATLMLLPLTPAILAL 345
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 1.06e-101

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 303.38  E-value: 1.06e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675   1 MNPLALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMY 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  81 SGQWSIMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTNLIYLSGLL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 161 SILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAM 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 241 TIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSSLTILPSTNNMKMTWQFTNT 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....*.
gi 1098386675 321 KHtMMLPTLITLSNMLLPLTPMISML 346
Cdd:MTH00070  321 TN-NLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-343 6.61e-101

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 301.36  E-value: 6.61e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675   1 MNPLALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  81 SGQWSIMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTNLIYLSGLL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 161 SILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAM 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 241 TIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSSLTILPSTNNMKMTWQFTNT 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|...
gi 1098386675 321 KHTmMLPTLITLSNMLLPLTPMI 343
Cdd:MTH00112  321 KNT-LTATLTTLSTLLLPLSPMI 342
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-306 1.87e-76

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 238.68  E-value: 1.87e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675   1 MNPLALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMY 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  81 SGQWSIMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTNLIYLSGLL 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 161 SILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAM 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1098386675 241 TIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSSLTILP 306
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFP 306
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 9.37e-74

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 231.78  E-value: 9.37e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675   1 MNPLALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMY 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  81 SGQWSIMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTNLIYLSGLL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 161 SILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAM 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 241 TIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSSLTILPSTNNMKMTWQFTNT 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*.
gi 1098386675 321 KHTMMlPTLITLSNMLLPLTPMISML 346
Cdd:MTH00200  321 SNLLV-GLLLLLSILGLPLTPQLLFL 345
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-346 3.18e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 165.38  E-value: 3.18e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675   1 MNPLALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMy 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  81 sgqwsIMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQmatYTNTNLIYLSGLL 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSY---LINNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 161 SILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAM 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 241 TIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSsltILPSTNNMKMTWQFTNT 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS---LMLNYNKNKWNLKKKKN 309

                         330       340
                  ....*....|....*....|....*.
gi 1098386675 321 KHTMMLPTLITLSNMLLPLTPMISML 346
Cdd:MTH00160  310 KFSLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 4-315 3.57e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 149.27  E-value: 3.57e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675   4 LALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQ 83
Cdd:MTH00144    4 PSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFS 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  84 WSIMKMtnpvasnvALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNT-NLIYLSGLLSI 162
Cdd:MTH00144   84 WFSMSL--------LLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSA 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 163 LIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTlMWNKTPAMTI 242
Cdd:MTH00144  156 LVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLG-SLKPSYKTGL 234

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1098386675 243 MLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSSLTILPSTNNMKMTW 315
Cdd:MTH00144  235 SIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 6-298 1.46e-40

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 144.92  E-value: 1.46e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675   6 LSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTInlmysgQWS 85
Cdd:MTH00011    8 MFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  86 IMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTNLIYLSGLLSILIG 165
Cdd:MTH00011   82 FPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 166 GWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAMTIMLM 245
Cdd:MTH00011  162 GLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLF 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1098386675 246 TTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIY 298
Cdd:MTH00011  242 IMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF 294
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 7-336 1.28e-32

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 123.63  E-value: 1.28e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675   7 SLILTTLLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTinLMYSGQWSI 86
Cdd:MTH00197    1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS--LSFSNLYLS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  87 MKMTNPVasnvaLMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLyqMATYTNTNLIYLSGLLSILIGG 166
Cdd:MTH00197   79 LLSVVLV-----ILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGG 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 167 WGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTLMWNKTPAMTIMLMT 246
Cdd:MTH00197  152 IGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGL 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 247 TLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYysslTILPSTNNMKMtwqFTNTKHTMML 326
Cdd:MTH00197  232 SFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY----KSLILSNWMIN---FLMKINLLYS 304

                         330
                  ....*....|
gi 1098386675 327 PTLITLSNML 336
Cdd:MTH00197  305 GLFILLMMML 314
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-311 1.46e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 105.50  E-value: 1.46e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  16 GTLITMMSSHWLTAWMGLEMNMLTM-IPILMKTTNPRSTEAATKYFMTQATASMMLMMALT-------------INLMYS 81
Cdd:MTH00196    5 GILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCAllcgttgglhlsyINLVLN 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  82 GQWSIMKMTNPVASNVALMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATytNTNLIYLSGLLS 161
Cdd:MTH00196   85 SGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGL--NVNILLIGGLFS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 162 ILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNP----TLTLLNLAIYILLTLSIFMILA--NTLTTSMSSLTLMWN 235
Cdd:MTH00196  163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILalNVYKNLIIEFSGLSR 242

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1098386675 236 KTPAMTIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRL---IYYSSLTILPSTNNM 311
Cdd:MTH00196  243 RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIvkiLFFQANSFLLISTKI 321
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-219 4.77e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 93.54  E-value: 4.77e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675   8 LILTTLLaGTLITMMSSHWLTAWMGLEMNMLTM-IPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQWSI 86
Cdd:MTH00199  102 LILIVAL-GSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  87 MKMTNPVASNVA----LMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTNLIylSGLLSI 162
Cdd:MTH00199  181 QGINSILTGDVGkiliTISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLI--CAVLSI 258

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1098386675 163 LIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNP----TLTLLNLAIYILLTLSIFMIL 219
Cdd:MTH00199  259 IYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSII 319
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-245 3.30e-20

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 91.33  E-value: 3.30e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675   7 SLILTTLLaGTLITMMSSHWLTAWMGLEMNMLTM-IPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQWS 85
Cdd:COG1007   106 ALLLFATL-GMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  86 IMKMTNPVASNVALMALMT------------KLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTN--- 150
Cdd:COG1007   185 LAGIAAALAAGGANSPLLLlglvlvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFpgl 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 151 ----TNLIYLSGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLIIL----PFNPTLTLLNLAIYILLTLSIFMILA-- 220
Cdd:COG1007   265 aadwQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVILll 344

                         250       260
                  ....*....|....*....|....*...
gi 1098386675 221 ---NTLTTSMSSLTLMWNKTPAMTIMLM 245
Cdd:COG1007   345 srkGGEAEEIEDLAGLARRSPLLALAMT 372
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-267 4.62e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 85.83  E-value: 4.62e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  23 SSHWLTAWMGLEMNMLTMIP-ILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQWSIMKMTNPVASNVA--- 98
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  99 --------LMALMTKLGSAPFHFWVPEVTQGVELTSGMILL-TWQKLAPL-----SLLYQMATYTNTNLIYLSGLLSILI 164
Cdd:pfam00361  81 llllflliLVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 165 GGWGGLNQTQLRKILAYSSISHMGWMLIIL----PFNPTLTLLNLAIYILLTLSIFMILANTLTTSMSSLTL-----MWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIrdyggLAK 240

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1098386675 236 KTPAMTIMLMTTLLSLGGLPPLSGFTPKWLMI 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLIL 272
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 2.41e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 79.61  E-value: 2.41e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  14 LAGTLITMMSSHWLTAWMGLEMNMLTM-IPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQWSIMKMTNP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  93 VASNVA------------LMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQM-------ATYTNTNL 153
Cdd:TIGR01770 192 LSNGMLnisllllgivliLVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 154 IYLSGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTL----TLLNLAIYILLTLSIFMILANTLTT---- 225
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLLRSYkdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1098386675 226 --SMSSLTLMWNKTPAMTIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLI 297
Cdd:TIGR01770 352 ieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
7-219 7.43e-15

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 75.24  E-value: 7.43e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675   7 SLILTTLLaGTLITMMSSHWLTAWMGLEMNMLTM-IPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQWS 85
Cdd:PRK05777  107 LLVLFALL-GMMVMVSANDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  86 IMKMTNPVASNVA------------LMALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATY----- 148
Cdd:PRK05777  186 FAGIAKALADGSGnsllllfglvflLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLVVafggl 265

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1098386675 149 --TNTNLIYLSGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTL----TLLNLAIYILLTLSIFMIL 219
Cdd:PRK05777  266 seDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLGAFGVI 342
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 6-192 3.59e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 64.11  E-value: 3.59e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675   6 LSLILTTLLAGTLItMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRST---------EAATKYFMTQATASMMLMMALTI 76
Cdd:MTH00198  191 FALVLIVGLGGLLL-IESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCAL 269

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  77 NLMYSGQ--------WSIMKMTNPVASNVAL------MALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLL 142
Cdd:MTH00198  270 YFGFTGNegmlgtilSATLETTNIELRQGSLgylfitVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL 349

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1098386675 143 yqmatytnTNLIYLSGLL------SILIGGWGGLNQTQLRKILAYSSISHMGWMLI 192
Cdd:MTH00198  350 --------TSLVITSKLLlsvaiiSLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-341 4.72e-09

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 51.87  E-value: 4.72e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1098386675 291 YFYMRLIYYSSLTILPSTNNMKMTWQFTNTKHTMMLPTLITLSNMLLPLTP 341
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-301 6.36e-09

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 57.08  E-value: 6.36e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  13 LLAGTLITMMSSHWLTAWMGLEMNMLTMIPILMKTTNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQWSI------ 86
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMadlaar 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  87 MKMTNPVASNVA----LMALMTKLGSAPFHFWVPE-----------VTQGVELTSGM--ILLTWQKLAPLSLLYQMATyt 149
Cdd:COG0651   196 LAELDPGLLLAAfallLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLGT-- 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 150 ntnLIYLSGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYI--------LLTLSIFMILAN 221
Cdd:COG0651   274 ---LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhalakaLLFLAAGAIERA 350

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 222 TLTTSMSSLTLMWNKTPAMTIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIYYSS 301
Cdd:COG0651   351 TGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 50-298 2.65e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 48.81  E-value: 2.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  50 PRSTEAATKYFMTQATASMMLMMAL--------TIN-----LMYSGQWSIMKMT---NPVASNVALMALMT-----KLGS 108
Cdd:PRK12667  160 GDAVEAAIKYALIGAVGTTLYFLALaflyatfgTLNmadlsAKIRGLSFPLTGGlagNPPLALGVALALALwaftiKAAI 239

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 109 APFHFWVPEV-----------TQGVELTSG---------MILLTWQKLAPLSLLYQmatytntNLIYLSGLLSILIGGWG 168
Cdd:PRK12667  240 FPNHFWLPDAhpaapspvsamLSGLVVNVGayaiirflyTIFGISPSLIDFRAALS-------PILIILGAVSAIIGALM 312

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 169 GLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYI--------LLTLSIFMILANTLTTSMSSLTLMWNKTPAM 240
Cdd:PRK12667  313 MVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIinhaiaksLLFLASGVFIHAAGTRDIDELAGLGRKMPIA 392

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1098386675 241 TIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLIY 298
Cdd:PRK12667  393 SFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWY 450
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 55-245 3.10e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 48.54  E-value: 3.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  55 AATKYFMTQATASMMLMMALTINLMYSGQWS-----IMKMTNPVASNVALMALM-----TKLGSAPFHFWVPEV-TQGve 123
Cdd:COG1008   162 AAIKFFLYTLAGSLLMLVAILALYFLAGALTfdiaeLAAAPLPLTAQLLLFLAFfiafaVKVPMFPFHTWLPDAhVEA-- 239

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 124 LTSGMILLTwqklaplSLLYQMATY---------------TNTNLIYLSGLLSILIGGWGGLNQTQLRKILAYSSISHMG 188
Cdd:COG1008   240 PTAGSVLLA-------GVLLKMGGYgllrfalplfpeasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMG 312

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1098386675 189 WMLI-ILPFNPT------LTLLNLAIYI-LLTLSIFMILANTLTTSMSSLTLMWNKTPAMTIMLM 245
Cdd:COG1008   313 FVLLgIFALNPLglqgavLQMVSHGLITaALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFL 377
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-194 8.02e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 47.45  E-value: 8.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  48 TNPRSTEAATKYFMTQATASMMLMMALTINLMYSGQWSIMKM-------TNPVASNVALMAL----MTKLGSAPFHFWVP 116
Cdd:COG1009   156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaptiLSSPLLTLILLLLllgaFGKSAQFPLHFWLP 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 117 E-----------------VTQGVELtsgmilltwqkLAPLSLLYQMATYTNTNLIYLsGLLSILIGGWGGLNQTQLRKIL 179
Cdd:COG1009   236 DamegptpvsallhaatmVKAGVYL-----------LARLSPLFALSPVWLTVVAII-GAITALFAALIALAQTDIKRVL 303

                         170
                  ....*....|....*
gi 1098386675 180 AYSSISHMGWMLIIL 194
Cdd:COG1009   304 AYSTVSQLGYMFLAL 318
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 55-199 2.19e-05

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 46.09  E-value: 2.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  55 AATKYFMTQATASMmLMMALTINLMYSGQWSI---MKMTNPVASNVA-------LMALMTKLGSAPFHFWVPEV-TQGVE 123
Cdd:TIGR01972 157 AAMKFFLYTLAGSL-LMLLAILGLYFLGGGTFdllELLNLPLPFGVQtwlflafFIAFAVKVPLFPLHTWLPDAhVEAPT 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 124 LTSGMILLTWQKLAP-------LSLLYQMATYTNTNLIYLsGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLI-ILP 195
Cdd:TIGR01972 236 AGSVILAGVLLKMGTygflrfnLPLFPDASLYFAPVLAAL-GVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLgIFS 314


                  ....
gi 1098386675 196 FNPT 199
Cdd:TIGR01972 315 FNEL 318
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-285 2.80e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 45.76  E-value: 2.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675   2 NPLALSLILTTLLAGTLITMMSSHWLTAWMGLEMNMLT---MIPILMKTtnprSTEAATKYFMTQATASMMLMMALTINL 78
Cdd:PRK08668   96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSsfmMVPMGKKE----SRKASLKYFVLSAIGAYAMLYAIFLIY 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  79 MYSGQWSI----MKMTNPVASNVALMALM-------TKLGSAPFHFWVPEV-------------TQGVELTSGMILLTWQ 134
Cdd:PRK08668  172 AKTGTFDFadisQGLINDTSTGFALIVFLfllafgvAKAGIFPLHVWAPDAyseapqsfsavlsGQLSKLGAYGFLLVLY 251

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 135 KLAPLSLLYQMATYTNTNL----IYLSGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTL-------L 203
Cdd:PRK08668  252 VLPGTKLFSEFGTYRGVPLfnyiLAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFagglfhvF 331

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 204 NLAIY-ILLTLSIFMILANTLTTSMSSLTLMWNKTPAMTIMLMTTLLSLGGLPPLSGFTPKWLMIHELTKNNsiiMPLTM 282
Cdd:PRK08668  332 NHALFkGLFFLIFAAVIYRTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKG---MPITA 408


                  ...
gi 1098386675 283 AIM 285
Cdd:PRK08668  409 FMA 411
PRK12650 PRK12650
DUF4040 family protein;
100-242 6.90e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 44.65  E-value: 6.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 100 MALMTKLGSAPFHFWVPEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTN-----LIYLSGLLSILIGGWGGLNQTQ 174
Cdd:PRK12650  216 VAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVavwnwLLIIVGMITALMGAVFAVQKTD 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 175 LRKILAYSSISHMGWMLIIL----PFNPTLTLLNLAIYILLTLSIFMILA----NTLTTSMSSLTLMWNKTP----AMTI 242
Cdd:PRK12650  296 LKKLTAYSTVSQLGWIVATIgvgtPFALTAAVVHTLAHALFKSSLFMLIGvvdhQAGTRDIRRLGSLWRRMPftfvSVTI 375
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
49-217 2.97e-04

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 42.35  E-value: 2.97e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  49 NPRSTEAATKYFMTQATASMMLMMALTinLMY---SGQWSIMKMTNPVASNVALMALMT----------KLGSAPFHFWV 115
Cdd:PRK02504  156 DPRSNEAALKYLLIGAASSAIFLYGSS--LLYglsGGSTQLSAIALALITSPSLGLALAlvfviagiafKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 116 PEVTQGVELTSGMILLTWQKLAPLSLLYQMATYTNTN-------LIYLSGLLSILIGGWGGLNQTQLRKILAYSSISHMG 188
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPSfdeqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1098386675 189 WMLIILPFNP----TLTLLNLAIYILLTLSIFM 217
Cdd:PRK02504  314 FVMIGLVAGTeagyASMVFYLLAYLFMNLGAFA 346
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 93-210 6.91e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 41.40  E-value: 6.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  93 VASNVALMALMTKLGSAPFHFWVPE-----------------VTQGVELTSGMILLTWQKLAPLSLLYQMAtytntnLIY 155
Cdd:PRK08375  203 TAFGFVLLALALKAAVFPLHTWLPRaypaappvvtallsglvTKVAVYALIRIYFTVFGGDFRFALGLGWL------LAV 276

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1098386675 156 LsGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLIILPFNPTLTLLNLAIYIL 210
Cdd:PRK08375  277 L-ALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLL 330
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-297 1.22e-03

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 40.37  E-value: 1.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  51 RSTEAATKYFMTQATASMMLmmALTINLMY--SGQ----WSI------MKMTNPVASNVALMALMT----KLGSAPFHFW 114
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSIL--VYGFSWLYglSGGeielQEIvnglinTQMYNSPGISIALIFITVgigfKLSLAPFHQW 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 115 VPEVTQGVELTSGMILLTWQKLAPLSLLYQMAT----YTNT---NLIYLSGLLSILIGGWGGLNQTQLRKILAYSSISHM 187
Cdd:CHL00049  237 TPDVYEGSPTPVVAFLSVTSKVAASALATRIFDipfyFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQI 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 188 GWMLI-ILPFNP----TLTLLNLAIYILLTLSIFMILA----NTLTTSMSSLTLMWNKTPAMTIMLMTTLLSLGGLPPLS 258
Cdd:CHL00049  317 GYVIIgIIVGDSndgyASMITYMLFYIFMNLGTFACIVlfglRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLA 396

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1098386675 259 GFTPKWLMIHELTKNNSIIMPLTMAIMTLLNMYFYMRLI 297
Cdd:CHL00049  397 GFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKII 435
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-192 4.02e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 38.86  E-value: 4.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  55 AATKYFMTQATASMM-----LMMAL-----TINLMYSGQWSIMKMTNPVASNVALMALMTKLGSAPFHFWVP----EVTQ 120
Cdd:PRK12561  138 AATKFILYTALASIFilvagLALALsgdtfTFDLAELGAKSYPLALELLLYAGFLIAFGVKLPIFPLHTWLPdahgEASA 217

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1098386675 121 GVELTSGMILLTWQKLAPLSLLYQMAT----YTNTNLIYLsGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLI 192
Cdd:PRK12561  218 PVSMILAGVLLKMGGYALIRFNVQMLPdahvYFAPALAIL-GVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLL 292
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 100-211 4.33e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 38.88  E-value: 4.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 100 MALMTKLGSAPFHFWVPE-----------VTQGVELT---SGMILLTWqklaplSLLYQMATYTNTnLIYLSGLLSILIG 165
Cdd:MTH00217  214 LSLAIKIPKIPFHIWLPQahveapvagsvILAGVLLKlggYGFIRFSW------PLLPEASEYFSP-LIQTLSLLAIIYG 286

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1098386675 166 GWGGLNQTQLRKILAYSSISHMGWMLIILpFNPTLTLLNLAIYILL 211
Cdd:MTH00217  287 SLTTCRQVDLKRIIAYSSVAHMGLVTLGI-FSHTIQGLVAAIFLML 331
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 54-298 4.59e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 38.92  E-value: 4.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  54 EAATKYFMTQATASMMLMMAltINLMYsGQWSIMKM-------------TNPVASNVALMALMTKLGSAPFHFWVPEV-T 119
Cdd:PRK08376  172 EAGIKYMFVGSLASSMVLLG--IALLY-GQYGTLNMaylavkmsenptvVAKIALALFIAGLAMKSGAVPVHMWLPDAyP 248

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 120 QGVELTSGMILLTWQ----KLAPLSL-LYQMATYTNTN--LIYLSGLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLI 192
Cdd:PRK08376  249 AAPSSISAMLLVIKQaglyALARVLFsIYGPAINLATVgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLL 328

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675 193 ILPF------NPTLT-------------LLNLAIY-ILLTLSIFMILANTLTTSMSSLTLMWNKTPAMTIMLMTTLLSLG 252
Cdd:PRK08376  329 GLGVglaalgDPAMAsygeialaggiyhIVNHALYkALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIV 408

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1098386675 253 GLPPLSGFTPKWLMIHELTKNNSIIMPLTMaIMTLLNMYFYMRLIY 298
Cdd:PRK08376  409 GLPPFNGFASKWLIYESSALFNPILGVIAM-IGSVLTLASFVKVFH 453
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 99-227 6.03e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 38.36  E-value: 6.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1098386675  99 LMALMTKLGSAPFHFWVPEV-----TQGVELTSGmILLTWQKLAPLSLLYQMATYTNTNL---IYLSGLLSILIGGWGGL 170
Cdd:MTH00226  237 FLAMAVKIPIFPFHIWLPKAhveapVAGSVLLAG-ILLKLGGYGLVRLSWPILPLGAQNLapaVIAMGIVGIVYGSFATC 315

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1098386675 171 NQTQLRKILAYSSISHMGWMliilpfnpTLTLLNLAIyILLTLSIFMILANTLTTSM 227
Cdd:MTH00226  316 RQIDVKRLVAYSSVAHMGLV--------SITLVTHDI-IGLTGSIFIMLAHGIVSSL 363
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 158-192 6.04e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 38.26  E-value: 6.04e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1098386675 158 GLLSILIGGWGGLNQTQLRKILAYSSISHMGWMLI 192
Cdd:PRK05846  284 GVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTL 318
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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