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Conserved domains on  [gi|1275416564|gb|ATU04831|]
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hypothetical protein BK696_15465 (plasmid) [Enterococcus faecium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PT_UbiA super family cl00337
UbiA family of prenyltransferases (PTases); Many characterized members of the UbiA ...
 1-58 1.08e-03

UbiA family of prenyltransferases (PTases); Many characterized members of the UbiA prenyltransferase family are aromatic prenyltransferases and play an important role in the biosynthesis of heme, chlorophyll, vitamin E, and vitamin K. They contain two copies of a motif similar to the active site DxxD motif of trans-prenyltransferases and are potentially related. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways.


The actual alignment was detected with superfamily member PRK12887:

Pssm-ID: 469727  Cd Length: 308  Bit Score: 39.18  E-value: 1.08e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1275416564   1 MAFYL-PYLLIFVSISGSIwliykifQTRYSLkgSKIRFKRFFFLG--CIFSL--IIVSSGLF 58
Cdd:PRK12887  114 LAALLgPWLLITVGISLLI-------GTAYSL--PPIRLKRFPLLAalCIFTVrgVIVNLGLF 167
 
Name Accession Description Interval E-value
ubiA PRK12887
tocopherol phytyltransferase; Reviewed
 1-58 1.08e-03

tocopherol phytyltransferase; Reviewed


Pssm-ID: 183813  Cd Length: 308  Bit Score: 39.18  E-value: 1.08e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1275416564   1 MAFYL-PYLLIFVSISGSIwliykifQTRYSLkgSKIRFKRFFFLG--CIFSL--IIVSSGLF 58
Cdd:PRK12887  114 LAALLgPWLLITVGISLLI-------GTAYSL--PPIRLKRFPLLAalCIFTVrgVIVNLGLF 167
 
Name Accession Description Interval E-value
ubiA PRK12887
tocopherol phytyltransferase; Reviewed
 1-58 1.08e-03

tocopherol phytyltransferase; Reviewed


Pssm-ID: 183813  Cd Length: 308  Bit Score: 39.18  E-value: 1.08e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1275416564   1 MAFYL-PYLLIFVSISGSIwliykifQTRYSLkgSKIRFKRFFFLG--CIFSL--IIVSSGLF 58
Cdd:PRK12887  114 LAALLgPWLLITVGISLLI-------GTAYSL--PPIRLKRFPLLAalCIFTVrgVIVNLGLF 167
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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