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Conserved domains on  [gi|1317784436|gb|AUI26183|]
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Plasmid recombination enzyme (plasmid) [Enterococcus faecium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MobM_relaxase super family cl03088
relaxase domain of MobM and similar proteins; With some plasmids, recombination can occur in a ...
 19-193 5.10e-18

relaxase domain of MobM and similar proteins; With some plasmids, recombination can occur in a site-specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre (plasmid recombination enzyme), also known as Mob (conjugative mobilization). The best characterized member of this family is encoded by the streptococcal plasmid pMV158 that recognizes the plasmid origin of transfer. MobM converts supercoiled plasmid DNA into relaxed DNA by cleaving a phosphodiester bond of a specific dinucleotide and remains bound to the 5'-end of the nick site.


The actual alignment was detected with superfamily member pfam01076:

Pssm-ID: 470731  Cd Length: 195  Bit Score: 81.98  E-value: 5.10e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436  19 NNRELTDRQK-TNDwhkHIDFTKSDENIYLEQTNLADKYEELFGEVVEKYNAKQKRADRKIEDYLA-------KVRKDkk 90
Cdd:pfam01076   1 NNYAIARMQKvKAS---NLDGIQKHNQRENETYDNKDIDPERSGLNYDLVNDKQIRYDEDIKDYIKenqkskrKIRKD-- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436  91 lePQREFIVQIGILDDFQTNradgsstgiskqqaeQNRVIANKILVQYYKEFQERNPNLAVYNAVIHNDEISPHLHLNIV 170
Cdd:pfam01076  76 --AVLENEILITSDPDFFEQ---------------LTYEEAKEFFETAFQFFEERYGKENVLYAVVHLDEATPHMHMGVV 138

                         170       180
                  ....*....|....*....|...
gi 1317784436 171 PVAEGYKrgvqkqpSFNKALVQQ 193
Cdd:pfam01076 139 PGTEDGR-------LSAKAIFGN 154
EnvC super family cl34844
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 237-431 2.32e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG4942:

Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 43.21  E-value: 2.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436 237 KDIHEYKEIMSEISELRQTAVKERESVSDELRYISRQREENERDKALMASERAKIEEEKKNmlnVKKEMAVIFQKDMVPL 316
Cdd:COG4942    27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE---LEKEIAELRAELEAQK 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436 317 ESFKRLPDGSYHLSGNDFVDLYQRATRATNAKRNADNMSEQYLQMLEQNTELNEYVATLEEERhlsgrKQLADLQVENKK 396
Cdd:COG4942   104 EELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR-----AELEAERAELEA 178

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1317784436 397 LKEENRSLRQRLERLKNAFQKSITRLSIRFGLAEK 431
Cdd:COG4942   179 LLAELEEERAALEALKAERQKLLARLEKELAELAA 213
 
Name Accession Description Interval E-value
Mob_Pre pfam01076
Plasmid recombination enzyme; With some plasmids, recombination can occur in a site specific ...
 19-193 5.10e-18

Plasmid recombination enzyme; With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilization). This family is also known as Mob-V. One of the family members, MobM, is encoded by a promiscuous plasmid actively involved in the spread of antibiotic resistance. Homologs of MobM are found in many plasmids and other mobile genetic elements of pathogenic bacteria, including S. aureus. MobM is a metal-dependent nuclease that uses histidine nitrogen for the nucleophilic attack on the scissile phosphate. Furthermore, in contrast to other DNA-processing enzymes, MobM is a histidine relaxase, a DNA-breaking and -joining enzyme, that operates through a phosphorus-nitrogen protein-DNA adduct for cell-to-cell DNA transfer. Mutational analysis indicate that the H(N/D)(Q/E)R N-terminal motif of MobM plays a crucial role in the cleavage and generation of stable DNA-protein adducts.


Pssm-ID: 395854  Cd Length: 195  Bit Score: 81.98  E-value: 5.10e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436  19 NNRELTDRQK-TNDwhkHIDFTKSDENIYLEQTNLADKYEELFGEVVEKYNAKQKRADRKIEDYLA-------KVRKDkk 90
Cdd:pfam01076   1 NNYAIARMQKvKAS---NLDGIQKHNQRENETYDNKDIDPERSGLNYDLVNDKQIRYDEDIKDYIKenqkskrKIRKD-- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436  91 lePQREFIVQIGILDDFQTNradgsstgiskqqaeQNRVIANKILVQYYKEFQERNPNLAVYNAVIHNDEISPHLHLNIV 170
Cdd:pfam01076  76 --AVLENEILITSDPDFFEQ---------------LTYEEAKEFFETAFQFFEERYGKENVLYAVVHLDEATPHMHMGVV 138

                         170       180
                  ....*....|....*....|...
gi 1317784436 171 PVAEGYKrgvqkqpSFNKALVQQ 193
Cdd:pfam01076 139 PGTEDGR-------LSAKAIFGN 154
MobM_relaxase cd17242
relaxase domain of MobM and similar proteins; With some plasmids, recombination can occur in a ...
 6-177 1.12e-11

relaxase domain of MobM and similar proteins; With some plasmids, recombination can occur in a site-specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre (plasmid recombination enzyme), also known as Mob (conjugative mobilization). The best characterized member of this family is encoded by the streptococcal plasmid pMV158 that recognizes the plasmid origin of transfer. MobM converts supercoiled plasmid DNA into relaxed DNA by cleaving a phosphodiester bond of a specific dinucleotide and remains bound to the 5'-end of the nick site.


Pssm-ID: 410988  Cd Length: 196  Bit Score: 63.82  E-value: 1.12e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436   6 SFKKGTKNTSISHNNREltdRQKTNdwhKHIDFTKSDENIYLEQTNLADKYEELfgevvekynakqkraDRKIEDYLA-- 83
Cdd:cd17242     6 KLKSGALGGALRHNERE---RETEN---PNIDPSRTHLNYELVGPGKKDYAEAI---------------KERLEELGKkk 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436  84 KVRKDKKLepQREFIVQigilddfqtnradGSSTGISKQQAEQnrviANKILVQYYKEFQERNPNLAVYNAVIHNDEISP 163
Cdd:cd17242    65 KIRKDAVL--AVEFILT-------------ASPEFFEGLDPEE----IEEFFKDALEFLKERFGEENIVSAVVHLDETTP 125

                         170
                  ....*....|....
gi 1317784436 164 HLHLNIVPVAEGYK 177
Cdd:cd17242   126 HLHAVVVPITEDGR 139
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 237-431 2.32e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 43.21  E-value: 2.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436 237 KDIHEYKEIMSEISELRQTAVKERESVSDELRYISRQREENERDKALMASERAKIEEEKKNmlnVKKEMAVIFQKDMVPL 316
Cdd:COG4942    27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE---LEKEIAELRAELEAQK 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436 317 ESFKRLPDGSYHLSGNDFVDLYQRATRATNAKRNADNMSEQYLQMLEQNTELNEYVATLEEERhlsgrKQLADLQVENKK 396
Cdd:COG4942   104 EELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR-----AELEAERAELEA 178

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1317784436 397 LKEENRSLRQRLERLKNAFQKSITRLSIRFGLAEK 431
Cdd:COG4942   179 LLAELEEERAALEALKAERQKLLARLEKELAELAA 213
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 240-463 4.34e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 43.12  E-value: 4.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436  240 HEYKEIMSEISELRQT---AVKERESVSDELRYISRQREENER----DKALMASERAKIEEEKKNMLNVKKEMAViFQKD 312
Cdd:TIGR02168  288 KELYALANEISRLEQQkqiLRERLANLERQLEELEAQLEELESkldeLAEELAELEEKLEELKEELESLEAELEE-LEAE 366

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436  313 MVPLESFKRLPDGSYHLSGNDFVDLYQRATRATNAKRNADNMSEQYLQMLEQN-TELNEYVATLEEERHLSGRKQLADLQ 391
Cdd:TIGR02168  367 LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLqQEIEELLKKLEEAELKELQAELEELE 446

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1317784436  392 VENKKLKEENRSLRQRLERLKNAFQKSITRLSirfGLAEKDMGLSEELEVLE--QEKTLFYRQNVSQRKLERSE 463
Cdd:TIGR02168  447 EELEELQEELERLEEALEELREELEEAEQALD---AAERELAQLQARLDSLErlQENLEGFSEGVKALLKNQSG 517
CENP-H pfam05837
Centromere protein H (CENP-H); This family consists of several eukaryotic centromere protein H ...
 359-445 2.61e-03

Centromere protein H (CENP-H); This family consists of several eukaryotic centromere protein H (CENP-H) sequences. Macromolecular centromere-kinetochore complex plays a critical role in sister chromatid separation, but its complete protein composition as well as its precise dynamic function during mitosis has not yet been clearly determined. CENP-H contains a coiled-coil structure and a nuclear localization signal. CENP-H is specifically and constitutively localized in kinetochores throughout the cell cycle. CENP-H may play a role in kinetochore organization and function throughout the cell cycle. This the C-terminus of the region, which is conserved from fungi to humans.


Pssm-ID: 461756 [Multi-domain]  Cd Length: 114  Bit Score: 37.56  E-value: 2.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436 359 LQMLEQNTELNEYVATLEEErHLSGRKQLADLQVENKKLKEENRSLRQRLERLKNafQKSITRlsirfglaeKDMGLSEE 438
Cdd:pfam05837   2 LPLINRRDELSSAILKLSSE-LRELQEELTEVEKENLRLKRKNRELAAELLELAK--EKESRR---------EDPKLRAQ 69


                  ....*..
gi 1317784436 439 LEVLEQE 445
Cdd:pfam05837  70 LEKLEAE 76
MobV NF041497
MobV family relaxase;
154-177 7.64e-03

MobV family relaxase;


Pssm-ID: 469385  Cd Length: 187  Bit Score: 37.55  E-value: 7.64e-03
                          10        20
                  ....*....|....*....|....
gi 1317784436 154 AVIHNDEISPHLHLNIVPVAEGYK 177
Cdd:NF041497  125 AVVHLDETTPHIHATVVPITEDGR 148
 
Name Accession Description Interval E-value
Mob_Pre pfam01076
Plasmid recombination enzyme; With some plasmids, recombination can occur in a site specific ...
 19-193 5.10e-18

Plasmid recombination enzyme; With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilization). This family is also known as Mob-V. One of the family members, MobM, is encoded by a promiscuous plasmid actively involved in the spread of antibiotic resistance. Homologs of MobM are found in many plasmids and other mobile genetic elements of pathogenic bacteria, including S. aureus. MobM is a metal-dependent nuclease that uses histidine nitrogen for the nucleophilic attack on the scissile phosphate. Furthermore, in contrast to other DNA-processing enzymes, MobM is a histidine relaxase, a DNA-breaking and -joining enzyme, that operates through a phosphorus-nitrogen protein-DNA adduct for cell-to-cell DNA transfer. Mutational analysis indicate that the H(N/D)(Q/E)R N-terminal motif of MobM plays a crucial role in the cleavage and generation of stable DNA-protein adducts.


Pssm-ID: 395854  Cd Length: 195  Bit Score: 81.98  E-value: 5.10e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436  19 NNRELTDRQK-TNDwhkHIDFTKSDENIYLEQTNLADKYEELFGEVVEKYNAKQKRADRKIEDYLA-------KVRKDkk 90
Cdd:pfam01076   1 NNYAIARMQKvKAS---NLDGIQKHNQRENETYDNKDIDPERSGLNYDLVNDKQIRYDEDIKDYIKenqkskrKIRKD-- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436  91 lePQREFIVQIGILDDFQTNradgsstgiskqqaeQNRVIANKILVQYYKEFQERNPNLAVYNAVIHNDEISPHLHLNIV 170
Cdd:pfam01076  76 --AVLENEILITSDPDFFEQ---------------LTYEEAKEFFETAFQFFEERYGKENVLYAVVHLDEATPHMHMGVV 138

                         170       180
                  ....*....|....*....|...
gi 1317784436 171 PVAEGYKrgvqkqpSFNKALVQQ 193
Cdd:pfam01076 139 PGTEDGR-------LSAKAIFGN 154
MobM_relaxase cd17242
relaxase domain of MobM and similar proteins; With some plasmids, recombination can occur in a ...
 6-177 1.12e-11

relaxase domain of MobM and similar proteins; With some plasmids, recombination can occur in a site-specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre (plasmid recombination enzyme), also known as Mob (conjugative mobilization). The best characterized member of this family is encoded by the streptococcal plasmid pMV158 that recognizes the plasmid origin of transfer. MobM converts supercoiled plasmid DNA into relaxed DNA by cleaving a phosphodiester bond of a specific dinucleotide and remains bound to the 5'-end of the nick site.


Pssm-ID: 410988  Cd Length: 196  Bit Score: 63.82  E-value: 1.12e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436   6 SFKKGTKNTSISHNNREltdRQKTNdwhKHIDFTKSDENIYLEQTNLADKYEELfgevvekynakqkraDRKIEDYLA-- 83
Cdd:cd17242     6 KLKSGALGGALRHNERE---RETEN---PNIDPSRTHLNYELVGPGKKDYAEAI---------------KERLEELGKkk 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436  84 KVRKDKKLepQREFIVQigilddfqtnradGSSTGISKQQAEQnrviANKILVQYYKEFQERNPNLAVYNAVIHNDEISP 163
Cdd:cd17242    65 KIRKDAVL--AVEFILT-------------ASPEFFEGLDPEE----IEEFFKDALEFLKERFGEENIVSAVVHLDETTP 125

                         170
                  ....*....|....
gi 1317784436 164 HLHLNIVPVAEGYK 177
Cdd:cd17242   126 HLHAVVVPITEDGR 139
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 237-431 2.32e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 43.21  E-value: 2.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436 237 KDIHEYKEIMSEISELRQTAVKERESVSDELRYISRQREENERDKALMASERAKIEEEKKNmlnVKKEMAVIFQKDMVPL 316
Cdd:COG4942    27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE---LEKEIAELRAELEAQK 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436 317 ESFKRLPDGSYHLSGNDFVDLYQRATRATNAKRNADNMSEQYLQMLEQNTELNEYVATLEEERhlsgrKQLADLQVENKK 396
Cdd:COG4942   104 EELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR-----AELEAERAELEA 178

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1317784436 397 LKEENRSLRQRLERLKNAFQKSITRLSIRFGLAEK 431
Cdd:COG4942   179 LLAELEEERAALEALKAERQKLLARLEKELAELAA 213
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 240-463 4.34e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 43.12  E-value: 4.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436  240 HEYKEIMSEISELRQT---AVKERESVSDELRYISRQREENER----DKALMASERAKIEEEKKNMLNVKKEMAViFQKD 312
Cdd:TIGR02168  288 KELYALANEISRLEQQkqiLRERLANLERQLEELEAQLEELESkldeLAEELAELEEKLEELKEELESLEAELEE-LEAE 366

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436  313 MVPLESFKRLPDGSYHLSGNDFVDLYQRATRATNAKRNADNMSEQYLQMLEQN-TELNEYVATLEEERHLSGRKQLADLQ 391
Cdd:TIGR02168  367 LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLqQEIEELLKKLEEAELKELQAELEELE 446

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1317784436  392 VENKKLKEENRSLRQRLERLKNAFQKSITRLSirfGLAEKDMGLSEELEVLE--QEKTLFYRQNVSQRKLERSE 463
Cdd:TIGR02168  447 EELEELQEELERLEEALEELREELEEAEQALD---AAERELAQLQARLDSLErlQENLEGFSEGVKALLKNQSG 517
CENP-H pfam05837
Centromere protein H (CENP-H); This family consists of several eukaryotic centromere protein H ...
 359-445 2.61e-03

Centromere protein H (CENP-H); This family consists of several eukaryotic centromere protein H (CENP-H) sequences. Macromolecular centromere-kinetochore complex plays a critical role in sister chromatid separation, but its complete protein composition as well as its precise dynamic function during mitosis has not yet been clearly determined. CENP-H contains a coiled-coil structure and a nuclear localization signal. CENP-H is specifically and constitutively localized in kinetochores throughout the cell cycle. CENP-H may play a role in kinetochore organization and function throughout the cell cycle. This the C-terminus of the region, which is conserved from fungi to humans.


Pssm-ID: 461756 [Multi-domain]  Cd Length: 114  Bit Score: 37.56  E-value: 2.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1317784436 359 LQMLEQNTELNEYVATLEEErHLSGRKQLADLQVENKKLKEENRSLRQRLERLKNafQKSITRlsirfglaeKDMGLSEE 438
Cdd:pfam05837   2 LPLINRRDELSSAILKLSSE-LRELQEELTEVEKENLRLKRKNRELAAELLELAK--EKESRR---------EDPKLRAQ 69


                  ....*..
gi 1317784436 439 LEVLEQE 445
Cdd:pfam05837  70 LEKLEAE 76
FtsB COG2919
Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning];
384-413 5.24e-03

Cell division protein FtsB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442163 [Multi-domain]  Cd Length: 96  Bit Score: 36.40  E-value: 5.24e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1317784436 384 RKQLADLQVENKKLKEENRSLRQRLERLKN 413
Cdd:COG2919    35 RQEIAELEAENAKLKARNAELEAEVADLKD 64
MobV NF041497
MobV family relaxase;
154-177 7.64e-03

MobV family relaxase;


Pssm-ID: 469385  Cd Length: 187  Bit Score: 37.55  E-value: 7.64e-03
                          10        20
                  ....*....|....*....|....
gi 1317784436 154 AVIHNDEISPHLHLNIVPVAEGYK 177
Cdd:NF041497  125 AVVHLDETTPHIHATVVPITEDGR 148
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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