NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|26379674|dbj|BAC25425|]
View 

unnamed protein product [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SOCS pfam12610
Suppressor of cytokine signalling; This domain family is found in bacteria and eukaryotes, and ...
 55-106 1.46e-12

Suppressor of cytokine signalling; This domain family is found in bacteria and eukaryotes, and is approximately 60 amino acids in length. The family is found in association with pfam07525, pfam00017. The suppressors of cytokine signaling (SOCS) family play important roles in regulating a variety of signal transduction pathways that are involved in immunity, growth and development of organizms.


:

Pssm-ID: 432667  Cd Length: 57  Bit Score: 62.10  E-value: 1.46e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 26379674    55 VEIPLRSQERQLSCSSI---ELDLDHSCGHRFLGRSLKQKLQDAVGQCFPIKNCS 106
Cdd:pfam12610   1 TRGPRRRRERRCSCSSIqemSDSVDDVSGRALSRRSLRQKLQDTVGLCLPLRSHR 55
 
Name Accession Description Interval E-value
SOCS pfam12610
Suppressor of cytokine signalling; This domain family is found in bacteria and eukaryotes, and ...
 55-106 1.46e-12

Suppressor of cytokine signalling; This domain family is found in bacteria and eukaryotes, and is approximately 60 amino acids in length. The family is found in association with pfam07525, pfam00017. The suppressors of cytokine signaling (SOCS) family play important roles in regulating a variety of signal transduction pathways that are involved in immunity, growth and development of organizms.


Pssm-ID: 432667  Cd Length: 57  Bit Score: 62.10  E-value: 1.46e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 26379674    55 VEIPLRSQERQLSCSSI---ELDLDHSCGHRFLGRSLKQKLQDAVGQCFPIKNCS 106
Cdd:pfam12610   1 TRGPRRRRERRCSCSSIqemSDSVDDVSGRALSRRSLRQKLQDTVGLCLPLRSHR 55
 
Name Accession Description Interval E-value
SOCS pfam12610
Suppressor of cytokine signalling; This domain family is found in bacteria and eukaryotes, and ...
 55-106 1.46e-12

Suppressor of cytokine signalling; This domain family is found in bacteria and eukaryotes, and is approximately 60 amino acids in length. The family is found in association with pfam07525, pfam00017. The suppressors of cytokine signaling (SOCS) family play important roles in regulating a variety of signal transduction pathways that are involved in immunity, growth and development of organizms.


Pssm-ID: 432667  Cd Length: 57  Bit Score: 62.10  E-value: 1.46e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 26379674    55 VEIPLRSQERQLSCSSI---ELDLDHSCGHRFLGRSLKQKLQDAVGQCFPIKNCS 106
Cdd:pfam12610   1 TRGPRRRRERRCSCSSIqemSDSVDDVSGRALSRRSLRQKLQDTVGLCLPLRSHR 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH