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Conserved domains on  [gi|74181810|dbj|BAE32610|]
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unnamed protein product [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
POM121 pfam15229
POM121 family;
292-527 2.58e-91

POM121 family;


:

Pssm-ID: 464572 [Multi-domain]  Cd Length: 226  Bit Score: 292.72  E-value: 2.58e-91
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810    292 KEKKKRTVAEED-QLHLDGQENKRRRHDSGGSGHSAFEPLVANGVPAAFVPKPGSLKRSLASQSSDDHLNKRSRTSSVSS 370
Cdd:pfam15229    1 KESRKRTVKDEDgQSVTEGQDSKRRRPDSSGSAQSAFRPLLANGVPSSFVPKPGPLKRGLHSKSSEDSLIKRSQTSSLSS 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810    371 LasactggipsSSRNAITSSYSSTRGISQLWKRSGPTSSPFSSPASSRSQTPERPAKKTREEEPCQqSSSSPPLVTDKES 450
Cdd:pfam15229   81 C----------SKRNAITSSYSSTRGFPQLQKRSGPGASPLSSPASSRSQTPQRPAKKARSEEGHS-SSSSASVKSDKEK 149

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 74181810    451 PGEKVTDTTTGKQQSSWTSPPTPGSSGQRKRKIQLLPSRRGDQLTLPPPPELGYSITAEDLDMERKASLQWFNKVLE 527
Cdd:pfam15229  150 QPEKVADTPSGKKQNSRNSPPTSGSSRPRKRKIPLLPSRRGEPLTLPPPPQLGYRVTAEDLDLEKKAALQWINKVLE 226
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 422-707 1.18e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 1.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   422 PERPAKKTREEEPcqqssSSPPLVTDKESPGEKVTDTTTGKQQSSW---TSPPTPGSSGQRKRKIQLlpsRRGDQLTLPP 498
Cdd:PHA03247 2577 PSEPAVTSRARRP-----DAPPQSARPRAPVDDRGDPRGPAPPSPLppdTHAPDPPPPSPSPAANEP---DPHPPPTVPP 2648

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   499 PPELGYSITAEDLDMERKASLQ------------WFNKVLEDK--PDDASASATDGPPSTSPPFTFTLPAV----GPAAS 560
Cdd:PHA03247 2649 PERPRDDPAPGRVSRPRRARRLgraaqassppqrPRRRAARPTvgSLTSLADPPPPPPTPEPAPHALVSATplppGPAAA 2728

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   561 PASLPAPSSNPLLESLKKMQESPA--------PSSSEPAEAATVAAPSPPKTPSLLAPLVSPLAGPLASTSSDSKPAATF 632
Cdd:PHA03247 2729 RQASPALPAAPAPPAVPAGPATPGgparparpPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPP 2808

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 74181810   633 LGLASASSITPLTDSKSSGVSQAEQSVSTPASTASSPTPKPSMLFGMLSPPASSSSLATPAPACASPMFKPIFPA 707
Cdd:PHA03247 2809 AAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPV 2883
Chi1 super family cl43877
Chitinase [Carbohydrate transport and metabolism];
918-1164 3.99e-05

Chitinase [Carbohydrate transport and metabolism];


The actual alignment was detected with superfamily member COG3469:

Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 47.83  E-value: 3.99e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810  918 SSSAKPALPTYPGANSQPTFGATDGATKPALAPSFGSSFTFGNSVASAPSAAPAPATFGSAAQPAFGGLkAAASTFGAPA 997
Cdd:COG3469    2 SSVSTAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTA-ATSSTTSTTA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810  998 STQPAFGSTTSVFSFGSATTSGFGAaataatttqttnsgsssslfgssAPSPFTFGGSAAPAGSGGFGLSATPGTSSTSG 1077
Cdd:COG3469   81 TATAAAAAATSTSATLVATSTASGA-----------------------NTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSG 137

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810 1078 TFSFGSGQSGTPGTTTSfgslsQNTLGAPSQGSPFAFSVGSTPESKPVFGGTSTPTFGQSAPAPGVGTTGSSLSFGASST 1157
Cdd:COG3469  138 ASATSSAGSTTTTTTVS-----GTETATGGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGL 212


                 ....*..
gi 74181810 1158 PAQGFVG 1164
Cdd:COG3469  213 PKHVLVG 219
 
Name Accession Description Interval E-value
POM121 pfam15229
POM121 family;
292-527 2.58e-91

POM121 family;


Pssm-ID: 464572 [Multi-domain]  Cd Length: 226  Bit Score: 292.72  E-value: 2.58e-91
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810    292 KEKKKRTVAEED-QLHLDGQENKRRRHDSGGSGHSAFEPLVANGVPAAFVPKPGSLKRSLASQSSDDHLNKRSRTSSVSS 370
Cdd:pfam15229    1 KESRKRTVKDEDgQSVTEGQDSKRRRPDSSGSAQSAFRPLLANGVPSSFVPKPGPLKRGLHSKSSEDSLIKRSQTSSLSS 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810    371 LasactggipsSSRNAITSSYSSTRGISQLWKRSGPTSSPFSSPASSRSQTPERPAKKTREEEPCQqSSSSPPLVTDKES 450
Cdd:pfam15229   81 C----------SKRNAITSSYSSTRGFPQLQKRSGPGASPLSSPASSRSQTPQRPAKKARSEEGHS-SSSSASVKSDKEK 149

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 74181810    451 PGEKVTDTTTGKQQSSWTSPPTPGSSGQRKRKIQLLPSRRGDQLTLPPPPELGYSITAEDLDMERKASLQWFNKVLE 527
Cdd:pfam15229  150 QPEKVADTPSGKKQNSRNSPPTSGSSRPRKRKIPLLPSRRGEPLTLPPPPQLGYRVTAEDLDLEKKAALQWINKVLE 226
PHA03247 PHA03247
large tegument protein UL36; Provisional
 422-707 1.18e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 1.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   422 PERPAKKTREEEPcqqssSSPPLVTDKESPGEKVTDTTTGKQQSSW---TSPPTPGSSGQRKRKIQLlpsRRGDQLTLPP 498
Cdd:PHA03247 2577 PSEPAVTSRARRP-----DAPPQSARPRAPVDDRGDPRGPAPPSPLppdTHAPDPPPPSPSPAANEP---DPHPPPTVPP 2648

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   499 PPELGYSITAEDLDMERKASLQ------------WFNKVLEDK--PDDASASATDGPPSTSPPFTFTLPAV----GPAAS 560
Cdd:PHA03247 2649 PERPRDDPAPGRVSRPRRARRLgraaqassppqrPRRRAARPTvgSLTSLADPPPPPPTPEPAPHALVSATplppGPAAA 2728

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   561 PASLPAPSSNPLLESLKKMQESPA--------PSSSEPAEAATVAAPSPPKTPSLLAPLVSPLAGPLASTSSDSKPAATF 632
Cdd:PHA03247 2729 RQASPALPAAPAPPAVPAGPATPGgparparpPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPP 2808

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 74181810   633 LGLASASSITPLTDSKSSGVSQAEQSVSTPASTASSPTPKPSMLFGMLSPPASSSSLATPAPACASPMFKPIFPA 707
Cdd:PHA03247 2809 AAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPV 2883
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
918-1164 3.99e-05

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 47.83  E-value: 3.99e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810  918 SSSAKPALPTYPGANSQPTFGATDGATKPALAPSFGSSFTFGNSVASAPSAAPAPATFGSAAQPAFGGLkAAASTFGAPA 997
Cdd:COG3469    2 SSVSTAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTA-ATSSTTSTTA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810  998 STQPAFGSTTSVFSFGSATTSGFGAaataatttqttnsgsssslfgssAPSPFTFGGSAAPAGSGGFGLSATPGTSSTSG 1077
Cdd:COG3469   81 TATAAAAAATSTSATLVATSTASGA-----------------------NTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSG 137

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810 1078 TFSFGSGQSGTPGTTTSfgslsQNTLGAPSQGSPFAFSVGSTPESKPVFGGTSTPTFGQSAPAPGVGTTGSSLSFGASST 1157
Cdd:COG3469  138 ASATSSAGSTTTTTTVS-----GTETATGGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGL 212


                 ....*..
gi 74181810 1158 PAQGFVG 1164
Cdd:COG3469  213 PKHVLVG 219
Nucleoporin_FG2 pfam15967
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of ...
 974-1180 3.24e-03

Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of chordate nucleoporins. The proteins carry many repeats of the FG sequence motif.


Pssm-ID: 435043 [Multi-domain]  Cd Length: 586  Bit Score: 41.58  E-value: 3.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810    974 TFGSAaqPAFGGLKAAASTFGAPASTQPafgSTTSVFSFGSattsgFGAAATAATTTQTTNSGSSSSLFGSSAPSPFTFG 1053
Cdd:pfam15967    5 SFGGG--PGSTATAGGGFSFGAAAASNP---GSTGGFSFGT-----LGAAPAATATTTTATLGLGGGLFGQKPATGFTFG 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   1054 G---SAAPAGSGGFGLSATPGTSSTSGTFSFGSGQ------------SGTPGTTTSFGSLSQNTlGAPSQGSPFAFSVGS 1118
Cdd:pfam15967   75 TpasSTAATGPTGLTLGTPAATTAASTGFSLGFNKpaasatpfslpaSSTSGGGLSLGSVLTST-AAQQGATGFTLNLGG 153

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 74181810   1119 TP-----ESKPVFGGTSTPTFG----QSAPAPGVGTTGSSLSFGASSTPAqgfvgvgpfgSAAPSFSIGAG 1180
Cdd:pfam15967  154 TPatttaVSTGLSLGSTLTSLGgslfQNTNSTGLGQTTLGLTLLATSTAP----------VSAPAASEGLG 214
PTZ00473 PTZ00473
Plasmodium Vir superfamily; Provisional
 1069-1170 4.49e-03

Plasmodium Vir superfamily; Provisional


Pssm-ID: 240430 [Multi-domain]  Cd Length: 420  Bit Score: 40.99  E-value: 4.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810  1069 TPGTSSTSGTFSFGSGQSGTPGTTTSFGSLSQNTLGAPSQGSpFAFSVGSTPESKPVFGGTStptfGQSAPAPGVGTTGS 1148
Cdd:PTZ00473  316 GPYNANYGGQFNSRSGRTGSSESIRGFTYDSSTTYGGSSYGT-SQTDSTSTYGSRSTFDSST----GGGSQSGGGSTYGG 390

                          90       100
                  ....*....|....*....|..
gi 74181810  1149 SLSFGASSTPAQGFVGVGPFGS 1170
Cdd:PTZ00473  391 SSTFDGSSRGSSDSFGVSYFGP 412
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 328-639 4.66e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.31  E-value: 4.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   328 EPLVANGVPAAFVPKPGSLKRSLASQSSDDHLNKRSRTSSVSSLASACTGGIPSSSRNAITSSYSSTRGISQLWKRSGPT 407
Cdd:PHA03307  127 PPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRP 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   408 SSPFSSPASSRSQTPERPAKKTREEEPCQQSSSSPPLVTDKESPGEKVTDTTTGKQQSSWTSPPTPGSSGQRKRKIQLLP 487
Cdd:PHA03307  207 PRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPAS 286

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   488 SRRGDQLTLPPPPELGYSitAEDLDMERKASLQWfnkvlEDKPDDASASATDGPPSTSPpftftlPAVGPAASPASLPAP 567
Cdd:PHA03307  287 SSSSPRERSPSPSPSSPG--SGPAPSSPRASSSS-----SSSRESSSSSTSSSSESSRG------AAVSPGPSPSRSPSP 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 74181810   568 SSNPLLESLKKMQESPAPSSSEPAEAATVAAPSPPKTPSLLAPLVSPLAGPLASTSSDSKPAATFLGLASAS 639
Cdd:PHA03307  354 SRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGA 425
SAP130_C pfam16014
Histone deacetylase complex subunit SAP130 C-terminus;
537-631 4.95e-03

Histone deacetylase complex subunit SAP130 C-terminus;


Pssm-ID: 464973 [Multi-domain]  Cd Length: 371  Bit Score: 40.69  E-value: 4.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810    537 ATDGPPSTSPPFTFTLPAVGPAASP-----ASLPAPSSNPLLESLKKMQES---PAPSSSEPAEAATVAAPSPPKTPSLL 608
Cdd:pfam16014   69 APAAPPSQPSVVLSTLPAAMAVTPPipasmANVVAPPTQPAASSTAACAVSsvlPEIKIKQEAEPMDTSQSVPPLTPTSI 148

                           90       100
                   ....*....|....*....|...
gi 74181810    609 APLVSPLAGPLASTSSDSKPAAT 631
Cdd:pfam16014  149 SPALTSLANNLSVPAGDLLPGAS 171
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 528-698 7.99e-03

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 40.24  E-value: 7.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810  528 DKPDDASASATDGPPSTSPPFT-FTLPAVGPAASPASL----PAPSSNPLLESLKKMQESPAPSSSEPAEAATVAAPSPP 602
Cdd:cd23959   70 DGPGLVTASTVSDCYVGNANFYeVDMSDAFAMAPDESLgpfrAARVPNPFSASSSTQRETHKTAQVAPPKAEPQTAPVTP 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810  603 ----KTPSLLAPLVSPLAGPLASTSSDSKPAATFLGLASAS-SITPLTDSKSSGVSQAEQSVSTPASTASSPTPKPSMLF 677
Cdd:cd23959  150 fgqlPMFGQHPPPAKPLPAAAAAQQSSASPGEVASPFASGTvSASPFATATDTAPSSGAPDGFPAEASAPSPFAAPASAA 229

                        170       180
                 ....*....|....*....|.
gi 74181810  678 GMLSPPASSSSLATPAPACAS 698
Cdd:cd23959  230 SFPAAPVANGEAATPTHACTI 250
 
Name Accession Description Interval E-value
POM121 pfam15229
POM121 family;
292-527 2.58e-91

POM121 family;


Pssm-ID: 464572 [Multi-domain]  Cd Length: 226  Bit Score: 292.72  E-value: 2.58e-91
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810    292 KEKKKRTVAEED-QLHLDGQENKRRRHDSGGSGHSAFEPLVANGVPAAFVPKPGSLKRSLASQSSDDHLNKRSRTSSVSS 370
Cdd:pfam15229    1 KESRKRTVKDEDgQSVTEGQDSKRRRPDSSGSAQSAFRPLLANGVPSSFVPKPGPLKRGLHSKSSEDSLIKRSQTSSLSS 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810    371 LasactggipsSSRNAITSSYSSTRGISQLWKRSGPTSSPFSSPASSRSQTPERPAKKTREEEPCQqSSSSPPLVTDKES 450
Cdd:pfam15229   81 C----------SKRNAITSSYSSTRGFPQLQKRSGPGASPLSSPASSRSQTPQRPAKKARSEEGHS-SSSSASVKSDKEK 149

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 74181810    451 PGEKVTDTTTGKQQSSWTSPPTPGSSGQRKRKIQLLPSRRGDQLTLPPPPELGYSITAEDLDMERKASLQWFNKVLE 527
Cdd:pfam15229  150 QPEKVADTPSGKKQNSRNSPPTSGSSRPRKRKIPLLPSRRGEPLTLPPPPQLGYRVTAEDLDLEKKAALQWINKVLE 226
PHA03247 PHA03247
large tegument protein UL36; Provisional
 422-707 1.18e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 1.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   422 PERPAKKTREEEPcqqssSSPPLVTDKESPGEKVTDTTTGKQQSSW---TSPPTPGSSGQRKRKIQLlpsRRGDQLTLPP 498
Cdd:PHA03247 2577 PSEPAVTSRARRP-----DAPPQSARPRAPVDDRGDPRGPAPPSPLppdTHAPDPPPPSPSPAANEP---DPHPPPTVPP 2648

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   499 PPELGYSITAEDLDMERKASLQ------------WFNKVLEDK--PDDASASATDGPPSTSPPFTFTLPAV----GPAAS 560
Cdd:PHA03247 2649 PERPRDDPAPGRVSRPRRARRLgraaqassppqrPRRRAARPTvgSLTSLADPPPPPPTPEPAPHALVSATplppGPAAA 2728

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   561 PASLPAPSSNPLLESLKKMQESPA--------PSSSEPAEAATVAAPSPPKTPSLLAPLVSPLAGPLASTSSDSKPAATF 632
Cdd:PHA03247 2729 RQASPALPAAPAPPAVPAGPATPGgparparpPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPP 2808

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 74181810   633 LGLASASSITPLTDSKSSGVSQAEQSVSTPASTASSPTPKPSMLFGMLSPPASSSSLATPAPACASPMFKPIFPA 707
Cdd:PHA03247 2809 AAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPV 2883
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 529-671 2.70e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 48.56  E-value: 2.70e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   529 KPDDASASATDGPPSTSPPFTFTLPAVGPAASPASLPAPssnplleslkkmQESPAPSSSEPAEAATVAAPSPPKTPSLL 608
Cdd:PRK14951  365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAP------------AAAPAAAASAPAAPPAAAPPAPVAAPAAA 432

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 74181810   609 APLVSPLAGPLASTSSDSKPAATflgLASASSITPLTDSKSSGVSQAEQSVSTPASTASSPTP 671
Cdd:PRK14951  433 APAAAPAAAPAAVALAPAPPAQA---APETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
526-672 2.88e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 48.23  E-value: 2.88e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   526 LEDKPDDASASaTDGPPSTSPPFTFTLPAVGPAASPASLPAPSSNPLLESlkkmqeSPAPSSSEPAEAATVAAPSPPKTP 605
Cdd:PRK14971  362 LTQKGDDASGG-RGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQ------PSAPQSATQPAGTPPTVSVDPPAA 434

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 74181810   606 SLLAPLVSPLAGPLASTSSDSKPAATFLglasASSITPLTdskSSGVSQAEQSVSTPASTASSPTPK 672
Cdd:PRK14971  435 VPVNPPSTAPQAVRPAQFKEEKKIPVSK----VSSLGPST---LRPIQEKAEQATGNIKEAPTGTQK 494
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
918-1164 3.99e-05

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 47.83  E-value: 3.99e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810  918 SSSAKPALPTYPGANSQPTFGATDGATKPALAPSFGSSFTFGNSVASAPSAAPAPATFGSAAQPAFGGLkAAASTFGAPA 997
Cdd:COG3469    2 SSVSTAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTA-ATSSTTSTTA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810  998 STQPAFGSTTSVFSFGSATTSGFGAaataatttqttnsgsssslfgssAPSPFTFGGSAAPAGSGGFGLSATPGTSSTSG 1077
Cdd:COG3469   81 TATAAAAAATSTSATLVATSTASGA-----------------------NTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSG 137

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810 1078 TFSFGSGQSGTPGTTTSfgslsQNTLGAPSQGSPFAFSVGSTPESKPVFGGTSTPTFGQSAPAPGVGTTGSSLSFGASST 1157
Cdd:COG3469  138 ASATSSAGSTTTTTTVS-----GTETATGGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGL 212


                 ....*..
gi 74181810 1158 PAQGFVG 1164
Cdd:COG3469  213 PKHVLVG 219
COG4625 COG4625
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ...
 782-1170 7.44e-05

Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];


Pssm-ID: 443664 [Multi-domain]  Cd Length: 900  Bit Score: 47.08  E-value: 7.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810  782 TGLGTATSTVASGTAASASKPVFGFGVTTAASTASSTMTSTSQSVLFGGAPPVTTSSSAPALASIFQFGKPLAPAASAAG 861
Cdd:COG4625  165 GGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 244

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810  862 TSFSQPLASSTQTAASNSGFSGFGSTLTTSTSAPATTSQPTLTFSNTVTPTFNIPFSSSAKPALPTYPGANSQPTFGATD 941
Cdd:COG4625  245 GGGAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 324

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810  942 GATKPALAPSFGSSFTFGNSVASAPSAAPAPATFGSAAQPAFGGLKAAASTFGAPASTQPAFGSTTSVFSFGSATTSGFG 1021
Cdd:COG4625  325 GGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGGGGGG 404

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810 1022 AAATAATTTQTTNSGSSSSLFGSSAPSPFTFGGSAAPAGSGGFGLSATPGTSSTSGTFSFGSGQSGTP-GTTTSFGSLSQ 1100
Cdd:COG4625  405 AGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGSGSGaGTLTLTGNNTY 484

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 74181810 1101 NTLGAPSQGSPFAFSVGSTPE--------SKPVFGGTSTPTFGQSAPAPGVGTTGSSLSFGASSTPAQGFVGVGPFGS 1170
Cdd:COG4625  485 TGTTTVNGGGNYTQSAGSTLAvevdaansDRLVVTGTATLNGGTVVVLAGGYAPGTTYTILAVAAALDALAGNGDLSA 562
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 529-631 1.23e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.42  E-value: 1.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   529 KPDDASASATDGPPSTSPPftfTLPAVGPAASPASLPAPSSNPLLESLKKMQESPAPSSSEPAEAATVAAPSPPKTPSLL 608
Cdd:PRK12270   37 GPGSTAAPTAAAAAAAAAA---SAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113

                          90       100
                  ....*....|....*....|....*...
gi 74181810   609 APLVSPLAGPLAST-----SSDSKPAAT 631
Cdd:PRK12270  114 EDEVTPLRGAAAAVaknmdASLEVPTAT 141
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 530-630 1.26e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 42.93  E-value: 1.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   530 PDDASASATDGPPSTSPPFTFTLPAVGPAASPASLPAPSSNPLLESLKKM--QESPAPSSSEPAEAATVAAPSPPKTPSL 607
Cdd:PRK07994  376 APAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAArqQLQRAQGATKAKKSEPAAASRARPVNSA 455

                          90       100
                  ....*....|....*....|...
gi 74181810   608 LAPLVSPLAGPLASTSSDSKPAA 630
Cdd:PRK07994  456 LERLASVRPAPSALEKAPAKKEA 478
Nucleoporin_FG2 pfam15967
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of ...
 974-1180 3.24e-03

Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of chordate nucleoporins. The proteins carry many repeats of the FG sequence motif.


Pssm-ID: 435043 [Multi-domain]  Cd Length: 586  Bit Score: 41.58  E-value: 3.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810    974 TFGSAaqPAFGGLKAAASTFGAPASTQPafgSTTSVFSFGSattsgFGAAATAATTTQTTNSGSSSSLFGSSAPSPFTFG 1053
Cdd:pfam15967    5 SFGGG--PGSTATAGGGFSFGAAAASNP---GSTGGFSFGT-----LGAAPAATATTTTATLGLGGGLFGQKPATGFTFG 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   1054 G---SAAPAGSGGFGLSATPGTSSTSGTFSFGSGQ------------SGTPGTTTSFGSLSQNTlGAPSQGSPFAFSVGS 1118
Cdd:pfam15967   75 TpasSTAATGPTGLTLGTPAATTAASTGFSLGFNKpaasatpfslpaSSTSGGGLSLGSVLTST-AAQQGATGFTLNLGG 153

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 74181810   1119 TP-----ESKPVFGGTSTPTFG----QSAPAPGVGTTGSSLSFGASSTPAqgfvgvgpfgSAAPSFSIGAG 1180
Cdd:pfam15967  154 TPatttaVSTGLSLGSTLTSLGgslfQNTNSTGLGQTTLGLTLLATSTAP----------VSAPAASEGLG 214
PTZ00473 PTZ00473
Plasmodium Vir superfamily; Provisional
 1069-1170 4.49e-03

Plasmodium Vir superfamily; Provisional


Pssm-ID: 240430 [Multi-domain]  Cd Length: 420  Bit Score: 40.99  E-value: 4.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810  1069 TPGTSSTSGTFSFGSGQSGTPGTTTSFGSLSQNTLGAPSQGSpFAFSVGSTPESKPVFGGTStptfGQSAPAPGVGTTGS 1148
Cdd:PTZ00473  316 GPYNANYGGQFNSRSGRTGSSESIRGFTYDSSTTYGGSSYGT-SQTDSTSTYGSRSTFDSST----GGGSQSGGGSTYGG 390

                          90       100
                  ....*....|....*....|..
gi 74181810  1149 SLSFGASSTPAQGFVGVGPFGS 1170
Cdd:PTZ00473  391 SSTFDGSSRGSSDSFGVSYFGP 412
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 328-639 4.66e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.31  E-value: 4.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   328 EPLVANGVPAAFVPKPGSLKRSLASQSSDDHLNKRSRTSSVSSLASACTGGIPSSSRNAITSSYSSTRGISQLWKRSGPT 407
Cdd:PHA03307  127 PPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRP 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   408 SSPFSSPASSRSQTPERPAKKTREEEPCQQSSSSPPLVTDKESPGEKVTDTTTGKQQSSWTSPPTPGSSGQRKRKIQLLP 487
Cdd:PHA03307  207 PRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPAS 286

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   488 SRRGDQLTLPPPPELGYSitAEDLDMERKASLQWfnkvlEDKPDDASASATDGPPSTSPpftftlPAVGPAASPASLPAP 567
Cdd:PHA03307  287 SSSSPRERSPSPSPSSPG--SGPAPSSPRASSSS-----SSSRESSSSSTSSSSESSRG------AAVSPGPSPSRSPSP 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 74181810   568 SSNPLLESLKKMQESPAPSSSEPAEAATVAAPSPPKTPSLLAPLVSPLAGPLASTSSDSKPAATFLGLASAS 639
Cdd:PHA03307  354 SRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGA 425
SAP130_C pfam16014
Histone deacetylase complex subunit SAP130 C-terminus;
537-631 4.95e-03

Histone deacetylase complex subunit SAP130 C-terminus;


Pssm-ID: 464973 [Multi-domain]  Cd Length: 371  Bit Score: 40.69  E-value: 4.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810    537 ATDGPPSTSPPFTFTLPAVGPAASP-----ASLPAPSSNPLLESLKKMQES---PAPSSSEPAEAATVAAPSPPKTPSLL 608
Cdd:pfam16014   69 APAAPPSQPSVVLSTLPAAMAVTPPipasmANVVAPPTQPAASSTAACAVSsvlPEIKIKQEAEPMDTSQSVPPLTPTSI 148

                           90       100
                   ....*....|....*....|...
gi 74181810    609 APLVSPLAGPLASTSSDSKPAAT 631
Cdd:pfam16014  149 SPALTSLANNLSVPAGDLLPGAS 171
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
829-1025 6.33e-03

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 40.51  E-value: 6.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810  829 GGAPPVTTSSSAPALASIFQFGKPLAPAASAAGTSFSQPLASSTQTAASNSGFSGFGSTltTSTSAPATTSQPTLTFSNT 908
Cdd:COG3469    3 SVSTAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGT--GTTAASSTAATSSTTSTTA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810  909 VTPTFNIPFSSSAKPALPTYPGANSQPTFGATDGATKPALAPSFGSSFTFGNSVASAPSAAPAPATFGSAAQPAfGGLKA 988
Cdd:COG3469   81 TATAAAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVS-GTETA 159

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 74181810  989 AASTFGAPASTQPAFGSTTSVFSFGSATTSGFGAAAT 1025
Cdd:COG3469  160 TGGTTTTSTTTTTTSASTTPSATTTATATTASGATTP 196
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 528-698 7.99e-03

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 40.24  E-value: 7.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810  528 DKPDDASASATDGPPSTSPPFT-FTLPAVGPAASPASL----PAPSSNPLLESLKKMQESPAPSSSEPAEAATVAAPSPP 602
Cdd:cd23959   70 DGPGLVTASTVSDCYVGNANFYeVDMSDAFAMAPDESLgpfrAARVPNPFSASSSTQRETHKTAQVAPPKAEPQTAPVTP 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810  603 ----KTPSLLAPLVSPLAGPLASTSSDSKPAATFLGLASAS-SITPLTDSKSSGVSQAEQSVSTPASTASSPTPKPSMLF 677
Cdd:cd23959  150 fgqlPMFGQHPPPAKPLPAAAAAQQSSASPGEVASPFASGTvSASPFATATDTAPSSGAPDGFPAEASAPSPFAAPASAA 229

                        170       180
                 ....*....|....*....|.
gi 74181810  678 GMLSPPASSSSLATPAPACAS 698
Cdd:cd23959  230 SFPAAPVANGEAATPTHACTI 250
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
533-759 8.93e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.22  E-value: 8.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   533 ASASATDGPPSTSPPFTFTLPAVGPAASPASLPAPSSNPLLESLKKMQESPAPSSSePAEAATVAAPSPPKTPSLLAPlv 612
Cdd:PRK07003  418 AAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPAD-SGSASAPASDAPPDAAFEPAP-- 494

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74181810   613 sPLAGPLASTSSDSKPAATfLGLASASSITPLTDSKSSGVSQAEQSVSTPASTASSPTPKPSML--FGMLSPPASSSSLA 690
Cdd:PRK07003  495 -RAAAPSAATPAAVPDARA-PAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLrnAGMRVSSDRGARAA 572

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 74181810   691 TPAPACASPMFKPIFPATPKSESDSPLPSSSSAATTASSSTAPPTAASTTPTFKPIFDKMEPFTAMPLS 759
Cdd:PRK07003  573 AAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDIPPDDYVPLS 641
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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