|
Name |
Accession |
Description |
Interval |
E-value |
| spore_sigmaK |
TIGR02846 |
RNA polymerase sigma-K factor; The sporulation-specific transcription factor sigma-K (also ... |
1-196 |
2.12e-120 |
|
RNA polymerase sigma-K factor; The sporulation-specific transcription factor sigma-K (also called sigma-27) is expressed in the mother cell compartment of endospore-forming bacteria such as Bacillus subtilis. Like its close homolog sigma-E (sigma-29) (see TIGR02835), also specific to the mother cell compartment, it must be activated by a proteolytic cleavage. Note that in Bacillus subtilis (and apparently also Clostridium tetani), but not in other endospore forming species such as Bacillus anthracis, the sigK gene is generated by a non-germline (mother cell only) chromosomal rearrangement that recombines coding regions for the N-terminal and C-terminal regions of sigma-K. [Transcription, Transcription factors, Cellular processes, Sporulation and germination]
Pssm-ID: 131893 [Multi-domain] Cd Length: 227 Bit Score: 340.16 E-value: 2.12e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 1 KIFLTGYVTGNSTFPKPLNEKEEKIYLERLKDGDVEAKRVLVERNLRLVAHIVKKYSSNyqnSKEMDDLISIGTIGLIKA 80
Cdd:TIGR02846 13 LLFLVGYVTNNGSFPQPLSEEEEKKYLDRLKEGDEEARNVLIERNLRLVAHIVKKFSNT---GEDVDDLISIGTIGLIKA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 81 IDSFDTNKGIRLATYAAKCIDNEILMFFRNTKKTKGEVFLQDPIGVDKEGNEICLIDILSSDSDSVLEAVENSLQVKELY 160
Cdd:TIGR02846 90 IDSFDPDKGTRLATYAARCIENEILMHLRALKKTKGEVSLQDPIGVDKEGNEISLIDILGSDGDSVIEQVELNLEIKKLY 169
|
170 180 190
....*....|....*....|....*....|....*.
gi 224771323 161 KKMSdVLSPREKEIIQMRYGLLDGDIKTQREIAGIL 196
Cdd:TIGR02846 170 KKLS-VLDGREREVIEMRYGLGDGRRKTQREIAKIL 204
|
|
| SigK |
COG5814 |
Sporulation sigma factor SigK (mother cell-specific, SpoIIIC/SpoIVCB) [Cell cycle control, ... |
2-196 |
1.08e-115 |
|
Sporulation sigma factor SigK (mother cell-specific, SpoIIIC/SpoIVCB) [Cell cycle control, cell division, chromosome partitioning, Transcription];
Pssm-ID: 444516 [Multi-domain] Cd Length: 234 Bit Score: 328.34 E-value: 1.08e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 2 IFLTGYVTGNStFPKPLNEKEEKIYLERLKDGDVEAKRVLVERNLRLVAHIVKKYSSNyqnSKEMDDLISIGTIGLIKAI 81
Cdd:COG5814 17 LLLVSYINNNA-FPQPLSEEEEAKYLERMAEGDEEARNILIEHNLRLVAHIVKKFENT---GEDTEDLISIGTIGLIKAI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 82 DSFDTNKGIRLATYAAKCIDNEILMFFRNTKKTKGEVFLQDPIGVDKEGNEICLIDILSSDSDSVLEAVENSLQVKELYK 161
Cdd:COG5814 93 NTFDPDKGTKLATYAARCIENEILMHLRSTKKTRKEVSLQDPIGTDKEGNEITLIDILGTDEDDVVDQVELKLEKEKLYE 172
|
170 180 190
....*....|....*....|....*....|....*
gi 224771323 162 KMsDVLSPREKEIIQMRYGLLDGDIKTQREIAGIL 196
Cdd:COG5814 173 KL-KKLSEREREVIELRYGLLNGEEKTQREIAKKL 206
|
|
| PRK05803 |
PRK05803 |
RNA polymerase sporulation sigma factor SigK; |
2-196 |
1.86e-112 |
|
RNA polymerase sporulation sigma factor SigK;
Pssm-ID: 180266 [Multi-domain] Cd Length: 233 Bit Score: 319.97 E-value: 1.86e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 2 IFLTGYVTGNStFPKPLNEKEEKIYLERLKDGDVEAKRVLVERNLRLVAHIVKKYSSNyqnSKEMDDLISIGTIGLIKAI 81
Cdd:PRK05803 16 LFLVSYVKNNS-FPQPLSEEEERKYLELMKEGDEEARNILIERNLRLVAHIVKKFENT---GEDVDDLISIGTIGLIKAI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 82 DSFDTNKGIRLATYAAKCIDNEILMFFRNTKKTKGEVFLQDPIGVDKEGNEICLIDILSSDSDSVLEAVENSLQVKELYK 161
Cdd:PRK05803 92 ESFDAGKGTKLATYAARCIENEILMHLRNLKKTKKEVSLQDPIGVDKEGNEISLIDILGSEEDDVIEQVELKMEVEKLYK 171
|
170 180 190
....*....|....*....|....*....|....*
gi 224771323 162 KMsDVLSPREKEIIQMRYGLLDGDIKTQREIAGIL 196
Cdd:PRK05803 172 KI-DILDEREKEVIEMRYGLGNGKEKTQREIAKAL 205
|
|
| PRK08301 |
PRK08301 |
RNA polymerase sporulation sigma factor SigE; |
7-196 |
5.30e-62 |
|
RNA polymerase sporulation sigma factor SigE;
Pssm-ID: 236228 [Multi-domain] Cd Length: 234 Bit Score: 191.99 E-value: 5.30e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 7 YVTGNSTFPKPLNEKEEKIYLERLKDGDVEAKRVLVERNLRLVAHIVKKYSSNYQNskeMDDLISIGTIGLIKAIDSFDT 86
Cdd:PRK08301 23 YIGGSEALPPPLSKEEEEYLLNKLPKGDEAVRSLLIERNLRLVVYIARKFENTGIN---IEDLISIGTIGLIKAVNTFNP 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 87 NKGIRLATYAAKCIDNEILMFFRNTKKTKGEVFLQDPIGVDKEGNEICLIDILSSDSDSVLEAVENSLQvKELYKKMSDV 166
Cdd:PRK08301 100 EKKIKLATYASRCIENEILMYLRRNNKVKAEVSFDEPLNIDWDGNELLLSDVLGTDNDIIYKDIEDEVD-RKLLKKALKK 178
|
170 180 190
....*....|....*....|....*....|
gi 224771323 167 LSPREKEIIQMRYGLLDGDIKTQREIAGIL 196
Cdd:PRK08301 179 LSDREKQIMELRFGLNGGEEKTQKEVADML 208
|
|
| RpoD |
COG0568 |
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]; DNA-directed RNA ... |
18-196 |
8.67e-32 |
|
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 440334 [Multi-domain] Cd Length: 268 Bit Score: 115.54 E-value: 8.67e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 18 LNEKEEKIYLERLKDGDVEAKRVLVERNLRLVAHIVKKYsSNYQNSkeMDDLISIGTIGLIKAIDSFDTNKGIRLATYAA 97
Cdd:COG0568 12 LTAEEEVELARRIQAGDEEAKRKLVEANLRLVVSIAKKY-QGRGLP--LLDLIQEGNLGLMKAVEKFDPERGFRFSTYAT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 98 KCIDNEILMF-FRNT----------------KKTKGE-----------------------------------VFLQDPIG 125
Cdd:COG0568 89 WWIRQAITRAiADQWrtirlpvhmaetlnklRRAKRQllqelgreptpeeiaeelgvpeekvremlrlarepVSLDAPVG 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 224771323 126 vdkEGNEICLIDILSSDS-DSVLEAVENSLQVKELYKKMsDVLSPREKEIIQMRYGLLDGDIKTQREIAGIL 196
Cdd:COG0568 169 ---DDEDSELGDLLEDEEaPSPEEALEEELLREELREAL-DTLTEREREILRLRFGLDDGEPHTLEEIGKEF 236
|
|
| FliA |
COG1191 |
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA ... |
27-196 |
5.85e-25 |
|
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA polymerase specialized sigma subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 440804 [Multi-domain] Cd Length: 236 Bit Score: 97.20 E-value: 5.85e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 27 LERLKDGDVEAKRVLVERNLRLVAHIVKKYSSNYqnSKEMDDLISIGTIGLIKAIDSFDTNKGIRLATYAAKCIDNEILM 106
Cdd:COG1191 6 LRRYQEGDEEAREELIEEYLPLVKKIASRLAGRL--PAELDDLIQVGLIGLIEAIDRFDPSKGVSFETYAVPRIRGAILD 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 107 FFR-----------NTKK----------------TKGEV-------------FLQDPIGV------DKEGNEICLIDILS 140
Cdd:COG1191 84 YLRdedwvprsvreLARKieeaieeleqelgrepTDEEIaeelgisleevqeALEAANAYqllsldEPLEDGDDLLDLLE 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 224771323 141 SDS-DSVLEAVENslqvKELYKKMSDVLSPREKEIIQMRY--GLldgdikTQREIAGIL 196
Cdd:COG1191 164 SGDpEEELEHEEL----REALAEAIEQLPERERLVLSLYYfeEL------TLKEIAEVL 212
|
|
| PRK08215 |
PRK08215 |
RNA polymerase sporulation sigma factor SigG; |
18-193 |
1.52e-20 |
|
RNA polymerase sporulation sigma factor SigG;
Pssm-ID: 181296 [Multi-domain] Cd Length: 258 Bit Score: 85.77 E-value: 1.52e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 18 LNEKEEKIYLERLKDGDVEAKRVLVERNLRLVAHIVKKYSSNYQNskeMDDLISIGTIGLIKAIDSFDTNKGIRLATYAA 97
Cdd:PRK08215 19 LKNEEMRELFERMQNGDKEAREKLINGNLRLVLSVIQRFNNRGEN---VDDLFQVGCIGLMKAIDNFDLSQNVKFSTYAV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 98 KCIDNEILMFFRN------------------------TKKTKGE-----------------VF----LQDPIGV-----D 127
Cdd:PRK08215 96 PMIIGEIRRYLRDnnpirvsrslrdiaykalqvreklINENSKEptveeiakelevpreevVFaldaIQDPVSLfepiyH 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 224771323 128 KEGNEICLIDILSSDSDSVLEAVENsLQVKELYKKmsdvLSPREKEIIQMRYglLDGdiKTQREIA 193
Cdd:PRK08215 176 DGGDPIYVMDQISDEKNKDENWLEE-IALKEAMKK----LNDREKLILNLRF--FQG--KTQMEVA 232
|
|
| Sigma70_r2 |
pfam04542 |
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. ... |
41-114 |
8.85e-18 |
|
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime. The aromatic residues of the recognition helix, found at the C-terminus of this domain are though to mediate strand separation, thereby allowing transcription initiation.
Pssm-ID: 427998 [Multi-domain] Cd Length: 71 Bit Score: 73.78 E-value: 8.85e-18
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 224771323 41 LVERNLRLVAHIVKKYSSNYQnskEMDDLISIGTIGLIKAIDSFDTNKGIRLATYAAKCIDNEILMFFRNTKKT 114
Cdd:pfam04542 1 LVERYLPLVYSLARRYLGDGA---DAEDLVQEGFLGLWRAIERFDPERGVSFSTWLYTIIRNAIIDYLRKQRRT 71
|
|
| PRK05572 |
PRK05572 |
RNA polymerase sporulation sigma factor, SigF/SigG family; |
17-196 |
1.01e-17 |
|
RNA polymerase sporulation sigma factor, SigF/SigG family;
Pssm-ID: 180137 [Multi-domain] Cd Length: 252 Bit Score: 78.09 E-value: 1.01e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 17 PLNEKEEKIYLERLKDGDVEAKRVLVERNLRLVAHIVKKYS-SNYqnskEMDDLISIGTIGLIKAIDSFDTNKGIRLATY 95
Cdd:PRK05572 13 QLKDEENKELIKKSQDGDQEARDTLVEKNLRLVWSVVQRFLnRGY----EPDDLFQIGCIGLLKAVDKFDLSYDVKFSTY 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 96 AAKCIDNEILMFFRN------------------------TKK-----TKGEvfLQDPIGVDKE----------------- 129
Cdd:PRK05572 89 AVPMIIGEIQRFLRDdgtvkvsrslketankirkdkdelSKElgrepTIEE--LAEYLGVTPEevvlaqeasrspqsihe 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 224771323 130 ------GNEICLIDILSSDSDsvlEAVENSLQVKELYKKmsdvLSPREKEIIQMRYgLLDgdiKTQREIAGIL 196
Cdd:PRK05572 167 tvhendGDPITLLDQIADQSE---EDWFDKIALKEAIRE----LDERERLIVYLRY-FKD---KTQSEVAKRL 228
|
|
| PRK08295 |
PRK08295 |
RNA polymerase sporulation sigma factor SigH; |
16-196 |
7.33e-17 |
|
RNA polymerase sporulation sigma factor SigH;
Pssm-ID: 181361 [Multi-domain] Cd Length: 208 Bit Score: 74.94 E-value: 7.33e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 16 KPLNEKEEKIYLERLKDGDVEAKRVLVERNLRLVAHIVKKYssnYQNSKEMDDLISIGTIGLIKAIDSFDTNKGIRLATY 95
Cdd:PRK08295 4 KDYDELEDEELVELARSGDKEALEYLIEKYKNFVRAKARSY---FLIGADREDIVQEGMIGLYKAIRDYDKDKLSSFKSF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 96 AAKCIDNEILMFFR--NTKKTKgevFLQDPIGVDK----EGNEICLIDILSSDSDSVLE-AVENSLQVKELYKKMSDVLS 168
Cdd:PRK08295 81 AELCITRQIITAIKtaNRQKHI---PLNSYVSLDKpiydEESDRTLLDVISEAKVTDPEeLIISKEELEDIEEKIEELLS 157
|
170 180
....*....|....*....|....*...
gi 224771323 169 PREKEIIQMrygLLDGdiKTQREIAGIL 196
Cdd:PRK08295 158 ELEKEVLEL---YLDG--KSYQEIAEEL 180
|
|
| sigma70-ECF |
TIGR02937 |
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the ... |
36-196 |
3.62e-16 |
|
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Pssm-ID: 274357 [Multi-domain] Cd Length: 158 Bit Score: 71.99 E-value: 3.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 36 EAKRVLVERNLRLVAHIVKKYssnYQNSKEMDDLISIGTIGLIKAIDSFDTNKgiRLATYAAKCIDNEILMFFRNTKKTK 115
Cdd:TIGR02937 1 EAFEELYERYLPLVYRYARRY---LGDDADAEDLVQEAFLKLLEALDRFDPEG--SFKAWLFRIARNLILDYLRRKRRLR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 116 GEVFlqdpigvdkegneicLIDILSSDSDSVLEAVENSLQVKELYKKMsDVLSPREKEIIQMRYglLDGdiKTQREIAGI 195
Cdd:TIGR02937 76 RELD---------------LLEELLDSDPSPEEELEQEEEREALREAL-EKLPEREREVLVLRY--LEG--LSYKEIAEI 135
|
.
gi 224771323 196 L 196
Cdd:TIGR02937 136 L 136
|
|
| PRK06596 |
PRK06596 |
RNA polymerase factor sigma-32; Reviewed |
4-193 |
6.61e-16 |
|
RNA polymerase factor sigma-32; Reviewed
Pssm-ID: 235838 [Multi-domain] Cd Length: 284 Bit Score: 73.67 E-value: 6.61e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 4 LTGYVTGNSTFPKpLNEKEEKIYLERLKD-GDVEAKRVLVERNLRLVAHIVKKYSSnY---QNskemdDLISIGTIGLIK 79
Cdd:PRK06596 16 LDAYIQAVNKIPM-LTAEEEYMLAKRLREhGDLEAAKQLVLSHLRFVVHIARGYRG-YglpQA-----DLIQEGNIGLMK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 80 AIDSFDTNKGIRLATYAAKCIDNEI----L----------------MFFrNTKKTKG--------EVFL----------- 120
Cdd:PRK06596 89 AVKRFDPEVGVRLVSFAVHWIKAEIheyiLrnwrivkvattkaqrkLFF-NLRKAKKrlgwlnpeEVEMvaeelgvseee 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 121 ----------QD-----PIGvDKEGNEICLIDIL---SSDSDSVLEAVENSLQVKELYKKMSDVLSPREKEIIQMRYglL 182
Cdd:PRK06596 168 vremesrlsgQDasldaPID-DDDEESGAPQDYLedkSSDPADVLEEDNWEDQRRALLADALEGLDERSRDIIEARW--L 244
|
250
....*....|.
gi 224771323 183 DGDIKTQREIA 193
Cdd:PRK06596 245 DDDKSTLQELA 255
|
|
| PRK07598 |
PRK07598 |
RNA polymerase sigma factor SigC; Validated |
27-196 |
8.97e-16 |
|
RNA polymerase sigma factor SigC; Validated
Pssm-ID: 236067 [Multi-domain] Cd Length: 415 Bit Score: 74.52 E-value: 8.97e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 27 LERLKDGDVEAKRVLVERNLRLVAHIVKKYssnyQNSK-EMDDLISIGTIGLIKAIDSFDTNKGIRLATYAAKCID---- 101
Cdd:PRK07598 166 LEQIQKQGLRAKEHMIKANLRLVVSVAKKY----QNRGlELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRqgit 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 102 --------------------NEILMFFRNTKKTKG--------------------EVFLQDP--------IGVDKEGNei 133
Cdd:PRK07598 242 raiatqsrtirlpvhiteklNKIKKAQRKISQEKGrtptiediaqelemtptqvrEVLLRVPrsvsletkVGKDKDTE-- 319
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 224771323 134 cLIDILSSDSDSVLE-AVENSLQvKELYKKMSDvLSPREKEIIQMRYGLLDGDIKTQREIAGIL 196
Cdd:PRK07598 320 -LGDLLETDDISPEEmLMRESLQ-RDLQHLLAD-LTSRERDVIRMRFGLADGHTYSLAEIGRAL 380
|
|
| PRK05657 |
PRK05657 |
RNA polymerase sigma factor RpoS; Validated |
16-96 |
1.45e-14 |
|
RNA polymerase sigma factor RpoS; Validated
Pssm-ID: 235548 [Multi-domain] Cd Length: 325 Bit Score: 70.37 E-value: 1.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 16 KPLNEKEEKIYLERL-KDGDVEAKRVLVERNLRLVAHIVKKYSSnyqNSKEMDDLISIGTIGLIKAIDSFDTNKGIRLAT 94
Cdd:PRK05657 65 SPLLTAEEEVYFARRaLRGDFAARQRMIESNLRLVVKIAKRYLN---RGLALLDLIEEGNLGLIRAVEKFDPERGFRFST 141
|
..
gi 224771323 95 YA 96
Cdd:PRK05657 142 YA 143
|
|
| PRK09210 |
PRK09210 |
RNA polymerase sigma factor RpoD; Validated |
18-96 |
1.60e-14 |
|
RNA polymerase sigma factor RpoD; Validated
Pssm-ID: 236413 [Multi-domain] Cd Length: 367 Bit Score: 70.40 E-value: 1.60e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 18 LNEKEEKIYLERLKDGDVEAKRVLVERNLRLVAHIVKKYSsnyqnSKEMD--DLISIGTIGLIKAIDSFDTNKGIRLATY 95
Cdd:PRK09210 111 LTAEEEIELAKRIEEGDEEAKQRLAEANLRLVVSIAKRYV-----GRGMLflDLIQEGNMGLMKAVEKFDYRKGFKFSTY 185
|
.
gi 224771323 96 A 96
Cdd:PRK09210 186 A 186
|
|
| PRK05901 |
PRK05901 |
RNA polymerase sigma factor; Provisional |
5-193 |
2.03e-13 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 235640 [Multi-domain] Cd Length: 509 Bit Score: 67.71 E-value: 2.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 5 TGYVTGNSTFPKPLNEKEEKIYLERLKDGDvEAKRVLVERNLRLVAHIVKKYSSnyqnsKEMD--DLISIGTIGLIKAID 82
Cdd:PRK05901 241 GLYAEELLAEGEKLDPELRRDLQWIGRDGK-RAKNHLLEANLRLVVSLAKRYTN-----RGLSflDLIQEGNLGLIKAVE 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 83 SFDTNKGIRLATYA---------------AKCI-----------------------------DNEIL--MFF-----RNT 111
Cdd:PRK05901 315 KFDYTKGYKFSTYAtwwirqaitramadqARTIripvhmvetinklgrierellqelgreptPEELAkeMGFtpekvREI 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 112 KKtkgevFLQDPIGVDK---EGNEICLIDILsSDSDSV--LEAVENSLqvkeLYKKMSDV---LSPREKEIIQMRYGLLD 183
Cdd:PRK05901 395 QK-----YNREPISLDKtigKEGDSQFGDFI-EDSEAVspVDAVSFTL----LQDQLQEVletLSEREAGVIRMRFGLTD 464
|
250
....*....|
gi 224771323 184 GDIKTQREIA 193
Cdd:PRK05901 465 GQPKTLDEIG 474
|
|
| PRK07406 |
PRK07406 |
RNA polymerase sigma factor RpoD; Validated |
37-195 |
2.63e-13 |
|
RNA polymerase sigma factor RpoD; Validated
Pssm-ID: 236012 [Multi-domain] Cd Length: 373 Bit Score: 67.12 E-value: 2.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 37 AKRVLVERNLRLVAHIVKKYssnyQNSK-EMDDLISIGTIGLIKAIDSFDTNKGIRLATYAA------------------ 97
Cdd:PRK07406 137 AKEKMVQSNLRLVVSIAKKY----MNRGlSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATwwirqaitraiadqsrti 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 98 --------------------------KCIDNEI----------LMFFRntKKTKGEVFLQDPIGVDKEGNeicLIDILSS 141
Cdd:PRK07406 213 rlpvhlyetisrikkttkvlsqefgrKPTEEEIaesmemtiekLRFIA--KSAQLPISLETPIGKEEDSR---LGDFIEA 287
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 224771323 142 DSDSVLEAVENSLqVKELYKKMSDVLSPREKEIIQMRYGLLDGDIKTQREIAGI 195
Cdd:PRK07406 288 DGETPEDDVAKNL-LREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQI 340
|
|
| PRK07921 |
PRK07921 |
RNA polymerase sigma factor SigB; Reviewed |
16-192 |
1.48e-12 |
|
RNA polymerase sigma factor SigB; Reviewed
Pssm-ID: 181169 [Multi-domain] Cd Length: 324 Bit Score: 64.75 E-value: 1.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 16 KPLNEKEEKIYLERLKDGdVEAKRVLVERNLRLVAHIVKKYSSnyqnsKEMD--DLISIGTIGLIKAIDSFDTNKGIRLA 93
Cdd:PRK07921 67 KRLSEARKRDLAAVVRDG-EAARRHLLEANLRLVVSLAKRYTG-----RGMPllDLIQEGNLGLIRAMEKFDYTKGFKFS 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 94 TYAAKCIDNEILMFFRNTKKT-----------------KGEVFLQ-----------------------------DPIGVD 127
Cdd:PRK07921 141 TYATWWIRQAITRGMADQSRTirlpvhlveqvnklariKRELHQQlgreatdeelaeesgipeekiadllehsrDPVSLD 220
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 224771323 128 K---EGNEICLID-ILSSDSDSVLEAVENSLQVKELyKKMSDVLSPREKEIIQMRYGLLDGDIKTQREI 192
Cdd:PRK07921 221 MpvgSDEEAPLGDfIEDSEATSAENAVIAGLLHTDI-RSVLATLDEREQQVIRLRFGLDDGQPRTLDQI 288
|
|
| PRK05949 |
PRK05949 |
RNA polymerase sigma factor; Validated |
18-96 |
5.11e-10 |
|
RNA polymerase sigma factor; Validated
Pssm-ID: 180321 [Multi-domain] Cd Length: 327 Bit Score: 57.55 E-value: 5.11e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 224771323 18 LNEKEEKIYLERLKdgdvEAKRVLVERNLRLVAHIVKKYSsnyQNSKEMDDLISIGTIGLIKAIDSFDTNKGIRLATYA 96
Cdd:PRK05949 77 LSETELKQTLKQGK----RAKQKMIEANLRLVVAIAKKYQ---KRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYA 148
|
|
| PRK07405 |
PRK07405 |
RNA polymerase sigma factor SigD; Validated |
30-196 |
6.48e-10 |
|
RNA polymerase sigma factor SigD; Validated
Pssm-ID: 180963 [Multi-domain] Cd Length: 317 Bit Score: 57.08 E-value: 6.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 30 LKDGDVeAKRVLVERNLRLVAHIVKKYssnYQNSKEMDDLISIGTIGLIKAIDSFDTNKGIRLATYA------------- 96
Cdd:PRK07405 76 IAEGEA-AKRKMVEANLRLVVSVAKKY---LKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAywwirqaitraia 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 97 --AKCIDNEILMFFRNTKKTKGEVFLQDPIGVDKEGNEIC----------------------------------LIDILS 140
Cdd:PRK07405 152 ekSRTIRLPIHITEKLNKIKKAQRQLSQQLGRAATIGELAeeleltpkqvreylerarqplsldlrvgdnqdteLGELLE 231
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 224771323 141 SDSDSVLE-AVENSLQVkELYKKMSDvLSPREKEIIQMRYGLLDGDIKTQREIAGIL 196
Cdd:PRK07405 232 DTGASPEDfATQSSLQL-DLERLMED-LTPQQKEVIALRFGLEDGQPLTLAKIGERL 286
|
|
| PRK06288 |
PRK06288 |
RNA polymerase sigma factor WhiG; Reviewed |
15-96 |
8.38e-10 |
|
RNA polymerase sigma factor WhiG; Reviewed
Pssm-ID: 235770 [Multi-domain] Cd Length: 268 Bit Score: 56.62 E-value: 8.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 15 PKPLNEKEEKIYLERLKDGDVEAKRVLVERNLRLVAHIVKKYSSNYQNSKEMDDLISIGTIGLIKAIDSFDTNKGIRLAT 94
Cdd:PRK06288 10 PKYAQQDETELWREYKKTGDPKIREYLILKYSPLVKYVAGRIAVGMPQNVEFDDLVSYGVFGLIDAIEKFDPEREIKFKT 89
|
..
gi 224771323 95 YA 96
Cdd:PRK06288 90 YA 91
|
|
| PRK07408 |
PRK07408 |
RNA polymerase sigma factor SigF; Reviewed |
41-109 |
9.76e-10 |
|
RNA polymerase sigma factor SigF; Reviewed
Pssm-ID: 180965 [Multi-domain] Cd Length: 256 Bit Score: 56.08 E-value: 9.76e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 224771323 41 LVERNLRLV---AH-IVKKYSSNYqnskemDDLISIGTIGLIKAIDSFDTNKGIRLATYAAKCIDNEILMFFR 109
Cdd:PRK07408 30 LVELNLGLVrkeAHrWSNQCSEPY------EDLVQVGSLGLIRAIERFDPSKGHAFSSFAIPYIRGEIQHYLR 96
|
|
| FliA_WhiG |
TIGR02479 |
RNA polymerase sigma factor, FliA/WhiG family; Most members of this family are the flagellar ... |
41-105 |
1.40e-09 |
|
RNA polymerase sigma factor, FliA/WhiG family; Most members of this family are the flagellar operon sigma factor FliA, controlling transcription of bacterial flagellar genes by RNA polymerase. An exception is the sigma factor WhiG in the genus Streptomyces, involved in the production of sporulating aerial mycelium.
Pssm-ID: 274153 [Multi-domain] Cd Length: 224 Bit Score: 55.36 E-value: 1.40e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 224771323 41 LVERNLRLVAHIVKKYSSNYQNSKEMDDLISIGTIGLIKAIDSFDTNKGIRLATYAAKCIDNEIL 105
Cdd:TIGR02479 1 LIRRYLPLVKRIAGRLSVGLPSSVELDDLIQAGMFGLLDAIERYDPSRGAKFETYAVQRIRGAML 65
|
|
| RpoE |
COG1595 |
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ... |
27-196 |
2.90e-09 |
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 441203 [Multi-domain] Cd Length: 181 Bit Score: 53.85 E-value: 2.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 27 LERLKDGDVEAKRVLVERNLRLVAHIVKKYSSNYQNSkemDDLISIGTIGLIKAIDSFDTNKgiRLATYAAKCIDNEILM 106
Cdd:COG1595 8 LERLRAGDEAAFEELYERYRPRLYRYARRLLGDRADA---EDLVQETFLRLWRKLDSFRGRG--SFRAWLYRIARNLAID 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 107 FFRntKKTKGEVFLQDpigvdkegneicLIDILSSDSDSVLEAVENSLQVKELYKKMsDVLSPREKEIIQMRYglLDGdi 186
Cdd:COG1595 83 HLR--KRRRRRELLDE------------LAEELPDEAADPEEALEAEELLEALLAAL-ERLPPRQREVLVLRY--LEG-- 143
|
170
....*....|
gi 224771323 187 KTQREIAGIL 196
Cdd:COG1595 144 LSYAEIAEIL 153
|
|
| PRK08583 |
PRK08583 |
RNA polymerase sigma factor SigB; Validated |
16-179 |
1.39e-08 |
|
RNA polymerase sigma factor SigB; Validated
Pssm-ID: 236306 [Multi-domain] Cd Length: 257 Bit Score: 53.16 E-value: 1.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 16 KPLNEKEEKIYL---ERLKDGDVEAKRVLVERNLRLVAHIVKKYSsnyQNSKEMDDLISIGTIGLIKAIDSFDTNKGIRL 92
Cdd:PRK08583 6 QPTKLTKEEVNKwiaEYQENQDEEAQEKLVKHYKNLVESLAYKYS---KGQSHHEDLVQVGMVGLLGAIRRYDPSFGRSF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 93 ATYAAKCIDNEILMFFRNT-----------------KK------------------------TKGEVF------------ 119
Cdd:PRK08583 83 EAFAVPTIIGEIKRYLRDKtwsvhvprrikelgpkiKKavdelttelqrspkiseiadrlgvSEEEVLeamemgksyqal 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 224771323 120 -LQDPIGVDKEGNEICLIDILSSdSDSVLEAVENSLqvkeLYKKMSDVLSPREKEIIQMRY 179
Cdd:PRK08583 163 sVDHSIEADSDGSTVTLLDIVGQ-QEDGYELTEQRM----ILEKILPVLSDREKSIIQCTF 218
|
|
| PRK07670 |
PRK07670 |
FliA/WhiG family RNA polymerase sigma factor; |
17-105 |
1.38e-07 |
|
FliA/WhiG family RNA polymerase sigma factor;
Pssm-ID: 181075 [Multi-domain] Cd Length: 251 Bit Score: 50.04 E-value: 1.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 17 PLNEKEEKIYLERLKDGDVEAKRVLVERNLRLVAHIVKKYSSNYQNSKEMDDLISIGTIGLIKAIDSFDTNKGIRLATYA 96
Cdd:PRK07670 3 SLTYEEQKLWDRWKEERDPDAADELIRRYMPLVHYHVQRISVGLPKSVSKDDLKSLGMLGLYDALEKFDPSRDLKFDTYA 82
|
....*....
gi 224771323 97 AKCIDNEIL 105
Cdd:PRK07670 83 SFRIRGAII 91
|
|
| PRK05658 |
PRK05658 |
RNA polymerase sigma factor RpoD; Validated |
36-96 |
7.33e-07 |
|
RNA polymerase sigma factor RpoD; Validated
Pssm-ID: 235549 [Multi-domain] Cd Length: 619 Bit Score: 48.64 E-value: 7.33e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 224771323 36 EAKRVLVERNLRLVAHIVKKYSSnyqnskemdDLISIGTIGLIKAIDSFDTNKGIRLATYA 96
Cdd:PRK05658 380 RAKKEMVEANLRLVISIAKKYTNrgl---qflDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 437
|
|
| fliA |
PRK06986 |
flagellar biosynthesis sigma factor; Validated |
41-100 |
1.07e-06 |
|
flagellar biosynthesis sigma factor; Validated
Pssm-ID: 235901 [Multi-domain] Cd Length: 236 Bit Score: 47.53 E-value: 1.07e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 41 LVERNLRLVAHIVKKYSSNYQNSKEMDDLISIGTIGLIKAIDSFDTNKGIRLATYAAKCI 100
Cdd:PRK06986 13 LVEQYAPLVKRIALRLKARLPASVDLDDLIQAGMIGLLEAARRYDGEQGASFETYAGQRI 72
|
|
| PRK08311 |
PRK08311 |
RNA polymerase sigma factor SigI; |
26-165 |
1.29e-06 |
|
RNA polymerase sigma factor SigI;
Pssm-ID: 236233 [Multi-domain] Cd Length: 237 Bit Score: 47.17 E-value: 1.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 26 YLERLKDGDVEAKRVLVERNLRLVAHIVKKYSSNYQNSKEMDDLiSIGTIGLIKAIDSFDTNKGIRLATYAAKCIDNEIL 105
Cdd:PRK08311 8 ILEKIKNGDEELREELIEEYKPFIAKVVSSVCGRYIDWENDDEL-SIGLIAFNEAIDSYDEEKGKSFLSFAELVIKRRLI 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 224771323 106 MFFRNTKKTKGEVFLQDPigvdkEGNEICLIDI--LSSDSDSVLEAVENSLQVKELYKKMSD 165
Cdd:PRK08311 87 DYFRKESKHNLVLSNSDE-----EDEEENDIEIelSLEEYQEEEENEERREEIEEFKKELKE 143
|
|
| rpoH2 |
PRK07500 |
RNA polymerase factor sigma-32; Reviewed |
17-96 |
1.60e-06 |
|
RNA polymerase factor sigma-32; Reviewed
Pssm-ID: 236033 [Multi-domain] Cd Length: 289 Bit Score: 47.34 E-value: 1.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 17 PLNEKEEKIYL-ERLKDG-DVEAKRVLVERNLRLVAHIVKKYSsNYQNSkeMDDLISIGTIGLIKAIDSFDTNKGIRLAT 94
Cdd:PRK07500 19 PYLEREEEHALaYRWKDHrDEDALHRIISAHMRLVISMAGKFR-RFGLP--MNDLIQEGYVGLLEAAARFEPDREVRFST 95
|
..
gi 224771323 95 YA 96
Cdd:PRK07500 96 YA 97
|
|
| PRK07122 |
PRK07122 |
RNA polymerase sigma factor SigF; Reviewed |
27-111 |
3.88e-06 |
|
RNA polymerase sigma factor SigF; Reviewed
Pssm-ID: 168831 [Multi-domain] Cd Length: 264 Bit Score: 45.92 E-value: 3.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 27 LERLKDGDVEAKRV---LVERNLRLVAHIVKKYSSNYQNskeMDDLISIGTIGLIKAIDSFDTNKGIRLATYAAKCIDNE 103
Cdd:PRK07122 28 LAGLPAGSPEFQRQrdrIVTRCLPLADHIARRFDGRGEP---RDDLVQVARVGLVNAVNRFDVETGSDFVSFAVPTIMGE 104
|
....*...
gi 224771323 104 ILMFFRNT 111
Cdd:PRK07122 105 VRRHFRDN 112
|
|
| spore_sigI |
TIGR02895 |
RNA polymerase sigma-I factor; Members of this sigma factor protein family are strictly ... |
36-122 |
2.56e-05 |
|
RNA polymerase sigma-I factor; Members of this sigma factor protein family are strictly limited to endospore-forming species in the Firmicutes lineage of bacteria, but are not universally present among such species. Sigma-I was shown to be induced by heat shock () in Bacillus subtilis and is suggested by its phylogenetic profile to be connected to the program of sporulation (). [Transcription, Transcription factors, Cellular processes, Sporulation and germination]
Pssm-ID: 131941 [Multi-domain] Cd Length: 218 Bit Score: 43.21 E-value: 2.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 36 EAKRVLVERNLRLVAHIVKKYSSNYQNSKEmDDLISIGTIGLIKAIDSFDTNKGIRLATYAAKCIDNEILMFFRNTKKTK 115
Cdd:TIGR02895 9 EEREELIRQYKPFIAKIVSSVCGRYIDTKS-DDELSIGLIAFNEAIESYDSNKGKSFLSFAKLIIKRRLIDYIRKNQKYQ 87
|
....*..
gi 224771323 116 GEVFLQD 122
Cdd:TIGR02895 88 NLLYLDE 94
|
|
| PRK05911 |
PRK05911 |
RNA polymerase sigma factor sigma-28; Reviewed |
34-105 |
1.00e-04 |
|
RNA polymerase sigma factor sigma-28; Reviewed
Pssm-ID: 235644 [Multi-domain] Cd Length: 257 Bit Score: 41.91 E-value: 1.00e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 224771323 34 DVEAKRVLVERNLRLVAHIVKKYSSNYQNSKEMDDLISIGTIGLIKAIDSFDTNKGIRLATYAAKCIDNEIL 105
Cdd:PRK05911 21 EIEYRDVLIEFYLPLVKNVAHRLISGMPSHVKTEDLYASGVEGLVRAVERFDPEKSRRFEGYALFLIKAAII 92
|
|
| PRK11924 |
PRK11924 |
RNA polymerase sigma factor; Provisional |
137-196 |
2.70e-03 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183384 [Multi-domain] Cd Length: 179 Bit Score: 36.87 E-value: 2.70e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 224771323 137 DILSSDSDSVLEAVENSLQVKELYKKMsDVLSPREKEIIQMRYglLDGdiKTQREIAGIL 196
Cdd:PRK11924 97 PEFAETAETPEAALLAKDDLARIDRCL-DALPVKQREVFLLRY--VEG--LSYREIAEIL 151
|
|
| Sigma70_r4 |
pfam04545 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
165-196 |
7.43e-03 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.
Pssm-ID: 461347 [Multi-domain] Cd Length: 50 Bit Score: 33.56 E-value: 7.43e-03
10 20 30
....*....|....*....|....*....|..
gi 224771323 165 DVLSPREKEIIQMRYglldGDIKTQREIAGIL 196
Cdd:pfam04545 3 ASLPPRERQVLVLRY----GEGLTLEEIGERL 30
|
|
| PRK09277 |
PRK09277 |
aconitate hydratase AcnA; |
119-162 |
9.06e-03 |
|
aconitate hydratase AcnA;
Pssm-ID: 236445 [Multi-domain] Cd Length: 888 Bit Score: 36.25 E-value: 9.06e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 224771323 119 FLQDPIGVDKEGNEICLIDILSSDsDSVLEAVENSLQvKELYKK 162
Cdd:PRK09277 563 LEKDPLGTDKDGNPVYLKDIWPSD-EEIDAVVAKAVK-PEMFRK 604
|
|
|