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Conserved domains on  [gi|1061898913|dbj|BAV57050|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Monacoa griseus]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009582)

NADH dehydrogenase subunit 6 (mitochondrion) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-173 4.62e-68

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 177196  Cd Length: 173  Bit Score: 204.60  E-value: 4.62e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1061898913   1 MTYLMSLFLFGLVLGLVAVASNPAPYFGALGLVLAAGAGCGVLAGHGGGFLSLVLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00138    1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1061898913  81 SWGDSSVAAYAG*******************VSWVAVDEFKEFSMLRGDSSGVALMYSSGGGVLVICAGVLLLTLFVVLE 160
Cdd:MTH00138   81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                         170
                  ....*....|...
gi 1061898913 161 LTRGLSRGALRAV 173
Cdd:MTH00138  161 LTRGLSRGALRAV 173
 
Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-173 4.62e-68

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 204.60  E-value: 4.62e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1061898913   1 MTYLMSLFLFGLVLGLVAVASNPAPYFGALGLVLAAGAGCGVLAGHGGGFLSLVLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00138    1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1061898913  81 SWGDSSVAAYAG*******************VSWVAVDEFKEFSMLRGDSSGVALMYSSGGGVLVICAGVLLLTLFVVLE 160
Cdd:MTH00138   81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                         170
                  ....*....|...
gi 1061898913 161 LTRGLSRGALRAV 173
Cdd:MTH00138  161 LTRGLSRGALRAV 173
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
18-91 2.12e-06

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 44.80  E-value: 2.12e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1061898913  18 AVASNPAPYFGALGLVLAAGAGCGVLAGHGGGFLSLVLFLIYLGGMLVVFAYSAAL-AAEPFPESWGDSSVAAYA 91
Cdd:pfam00499   2 GVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAAL 76
 
Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-173 4.62e-68

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 204.60  E-value: 4.62e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1061898913   1 MTYLMSLFLFGLVLGLVAVASNPAPYFGALGLVLAAGAGCGVLAGHGGGFLSLVLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00138    1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1061898913  81 SWGDSSVAAYAG*******************VSWVAVDEFKEFSMLRGDSSGVALMYSSGGGVLVICAGVLLLTLFVVLE 160
Cdd:MTH00138   81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                         170
                  ....*....|...
gi 1061898913 161 LTRGLSRGALRAV 173
Cdd:MTH00138  161 LTRGLSRGALRAV 173
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-173 2.29e-43

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 141.91  E-value: 2.29e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1061898913   1 MTYLMSLFLFGLVLGLVAVASNPAPYFGALGLVLAAGAGCGVLAGHGGGFLSLVLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00065    1 MMYLGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1061898913  81 SWGDSSVAAYAG*******************VSWVAVDEFkEFSMLRGDSSGVALMYSSGGGVLVICAGVLLLTLFVVLE 160
Cdd:MTH00065   81 AWGSWSVLVYVLFYLLLLIVGYILFGCNFSLEFLFTNYDT-EFSVVGYDWGGVGLMYSSGGWFLMISGWVLLLTLFVVLE 159

                         170
                  ....*....|...
gi 1061898913 161 LTRGLSRGALRAV 173
Cdd:MTH00065  160 VTRGLSRGSLRAV 172
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-173 1.18e-35

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 122.16  E-value: 1.18e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1061898913   1 MTYLMSLFLFGLVLGLVAVASNPAPYFGALGLVLAAGAGCGVLAGHGGGFLSLVLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00115    1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1061898913  81 SWGDSSVAAY-AG*******************VSWVAVDEFKEFSMLRGDSSGVALMYSSGGGVLVICAGVLLLTLFVVL 159
Cdd:MTH00115   81 AWGDWGVVGYvVGFVLVVVVVGVVVGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                         170
                  ....*....|....
gi 1061898913 160 ELTRGLSRGALRAV 173
Cdd:MTH00115  161 ELVRGLSRGALRAF 174
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-173 3.20e-26

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 97.75  E-value: 3.20e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1061898913   1 MTYLMSLFLFGLVLGLVAVASNPAPYFGALGLVLAAGAGCGVLAGHGGGFLSLVLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00214    1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1061898913  81 SWGDSSVAAYAG*******************VSWVAVDEFKEFSMlrgdsSGVALMYSSGGGVLVICAGVLLLTLFVVLE 160
Cdd:MTH00214   81 SWGGWSVLLFFLFYLLGLGFVGFYFYGGWEMLSWMGVDEANNLDL-----SGVSDLYSRGFFLLLLGGVVLFLVLFVVLE 155

                         170
                  ....*....|...
gi 1061898913 161 LTRGLSRGALRAV 173
Cdd:MTH00214  156 LVRGLSRGALRVV 168
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-146 6.96e-23

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 89.48  E-value: 6.96e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1061898913   1 MTYLMSLFLFGLVLGLVAVASNPAPYFGALGLVLAAGAGCGVLAGHGGGFLSLVLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00109    2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1061898913  81 SWGDSSVAAYAG*******************VSWV---------AVDEFKEFSMLRGDSSGVALMYSSGGGVLVI 146
Cdd:MTH00109   82 TWVSNKVVLGALLLGLLMELLLVLYVLKDDEVEVVfnfnglgdwVIYDTGGSGFFSEDAMGVAALYSYGTWLVVV 156
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 25-79 9.29e-14

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 65.31  E-value: 9.29e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1061898913  25 PYFGALGLVLAAGAGCGVLAGHGGGFLSLVLFLIYLGGMLVVFAYSAALAAEPFP 79
Cdd:MTH00045   23 PYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYP 77
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
18-91 2.12e-06

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 44.80  E-value: 2.12e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1061898913  18 AVASNPAPYFGALGLVLAAGAGCGVLAGHGGGFLSLVLFLIYLGGMLVVFAYSAAL-AAEPFPESWGDSSVAAYA 91
Cdd:pfam00499   2 GVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAAL 76
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 29-74 5.17e-04

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 38.71  E-value: 5.17e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1061898913  29 ALGLVLAAGAGCGVLAGHGGGFLSLVLFLIYLGGMLVVFAYSAALA 74
Cdd:MTH00152   27 GLVLLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLS 72
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 50-74 1.17e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 37.48  E-value: 1.17e-03
                          10        20
                  ....*....|....*....|....*
gi 1061898913  50 FLSLVLFLIYLGGMLVVFAYSAALA 74
Cdd:MTH00166   47 WFSYILFLIFLGGMLVLFIYITSLA 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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