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Conserved domains on  [gi|505271|emb|CAA54057|]
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Nup145p [Saccharomyces cerevisiae]

Protein Classification

Nucleoporin_FG and Nucleoporin2 domain-containing protein( domain architecture ID 10614343)

protein containing domains Nucleoporin_FG, Nucleoporin2, and Nup96

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Nucleoporin2 pfam04096
Nucleoporin autopeptidase; The nuclear pore complex protein plays a role in bidirectional ...
 460-605 1.97e-66

Nucleoporin autopeptidase; The nuclear pore complex protein plays a role in bidirectional transport across the nucleoporin complex in nucleocytoplasmic transport. The mammalian nuclear pore complex (NPC) is comprised of approximately 30 unique proteins, collectively known as nucleoporins. This family includes yeast family members such as Nup145p as well as vertebrate Nup98. The NUP C-terminal domains of Nup98 and Nup145 possess peptidase S59 autoproteolytic activity. The autoproteolytic sites of Nup98 and Nup145 each occur immediately C-terminal to the NUP C-terminal domain. Thus, although this domain occurs in the middle of each precursor polypeptide, it winds up at the C-terminal end of the N-terminal cleavage product. Cleavage of the peptide chains are necessary for the proper targeting to the nuclear pore.


:

Pssm-ID: 461171  Cd Length: 143  Bit Score: 220.44  E-value: 1.97e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      460 GYWCSPSPEQLERLSLKQLAAVSNFVIGRRGYGCITFQHDVDLTAFtksFREELFGKIVIFRSsKTVEVYPDEATKPMIG 539
Cdd:pfam04096    3 DYWTSPSLEELKKMSREQLSSVENFTVGRKGYGSVRFLGPVDLTGL---DLDEIFGKIVKFEP-REVTVYPDESSKPPVG 78

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 505271      540 HGLNVPAIITLENVYPVDKKTKKPMKDTTKfAEFQVFDRKLRSMREMNYISYNPFGGTWTFKVNHF 605
Cdd:pfam04096   79 QGLNVPATITLENVWPRDKDTKEPIKDPSG-PRLEKHIERLKRVQGTEFVSYDPETGTWTFKVEHF 143
Nup96 super family cl13536
Nuclear protein 96; Nup96 (often known by the name of its yeast homolog Nup145C) is part of ...
 898-1150 8.08e-35

Nuclear protein 96; Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex.


The actual alignment was detected with superfamily member pfam12110:

Pssm-ID: 463462  Cd Length: 287  Bit Score: 135.03  E-value: 8.08e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      898 EQIFLYLLLNDVVRASKLAIESKNGHLSVLISYLGSnDPRIRDLAELQLQKWSTGG--CSIDKNISKIYKLLSGSP--FE 973
Cdd:pfam12110    1 EKAFALLTGHRVEEACELAIDSGDFRLATLLSQAGG-DDSFREDMAEQLDDWRESGvdSEIDEPRRKLYELLAGNVlvSE 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      974 GLFSLKELESEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFS--------LP------------------YDDPIGVI 1027
Cdd:pfam12110   80 GKKSTINISEGLDWKRAFGLRLWYGIPPDTSIEDAVEAYEEALSqgrepappLPwyleegdseswedprlkkREDLLYHL 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     1028 FQLYAanENTEKLYKEVRQRT---NALDVQFCWYLIQTLR--FNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCF 1102
Cdd:pfam12110  160 LKLYA--DPTAPLEAVLDPESsspDPLDYRLSWHLYQVLSavRLGYGHLSSAKADQLTLSFASQLESLGLWQWAVFVLLH 237

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|
gi 505271     1103 LNDDKAAEDTIKRLVMREITLLRASTND--HILNRLKIPSQLIFNAQALK 1150
Cdd:pfam12110  238 LEDPARRERAVRELLARHAELISEDDAKerFLTEKLKIPEAWIHEAKALY 287
Nucleoporin_FG pfam13634
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ...
 34-122 1.74e-17

Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.


:

Pssm-ID: 463941 [Multi-domain]  Cd Length: 90  Bit Score: 78.43  E-value: 1.74e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271       34 PQKSTGLFGNvnvnaNTSTPSPSGGLFNANSNANsisQQPANNSLFGNK-PAQPSGGLFGATNNTTSKSA-GSLFGNNNA 111
Cdd:pfam13634    7 TSTSGGLFGN-----TSTTAASGGGLFGAASTAT---ATTSGGGLFGNSsSNAPSGGLFGATNTTTQTATgGGLFGNNAA 78

                           90
                   ....*....|.
gi 505271      112 TANSTGSTGLF 122
Cdd:pfam13634   79 TTTSTTGGGLF 89
Nucleoporin_FG pfam13634
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ...
 89-209 2.56e-16

Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.


:

Pssm-ID: 463941 [Multi-domain]  Cd Length: 90  Bit Score: 75.35  E-value: 2.56e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271       89 GLFGATNNTTsksaGSLFGNNNATANSTGstGLFSGSNNIASSTQNGGLFGNsnnnnitsttqngglfgkpTTTPAGAGG 168
Cdd:pfam13634    1 GLFGAATSTS----GGLFGNTSTTAASGG--GLFGAASTATATTSGGGLFGN-------------------SSSNAPSGG 55

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 505271      169 LFGNSSSTNS---TTGLFGSNNTQSStgifgqkpgASTTGGLFG 209
Cdd:pfam13634   56 LFGATNTTTQtatGGGLFGNNAATTT---------STTGGGLFG 90
 
Name Accession Description Interval E-value
Nucleoporin2 pfam04096
Nucleoporin autopeptidase; The nuclear pore complex protein plays a role in bidirectional ...
 460-605 1.97e-66

Nucleoporin autopeptidase; The nuclear pore complex protein plays a role in bidirectional transport across the nucleoporin complex in nucleocytoplasmic transport. The mammalian nuclear pore complex (NPC) is comprised of approximately 30 unique proteins, collectively known as nucleoporins. This family includes yeast family members such as Nup145p as well as vertebrate Nup98. The NUP C-terminal domains of Nup98 and Nup145 possess peptidase S59 autoproteolytic activity. The autoproteolytic sites of Nup98 and Nup145 each occur immediately C-terminal to the NUP C-terminal domain. Thus, although this domain occurs in the middle of each precursor polypeptide, it winds up at the C-terminal end of the N-terminal cleavage product. Cleavage of the peptide chains are necessary for the proper targeting to the nuclear pore.


Pssm-ID: 461171  Cd Length: 143  Bit Score: 220.44  E-value: 1.97e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      460 GYWCSPSPEQLERLSLKQLAAVSNFVIGRRGYGCITFQHDVDLTAFtksFREELFGKIVIFRSsKTVEVYPDEATKPMIG 539
Cdd:pfam04096    3 DYWTSPSLEELKKMSREQLSSVENFTVGRKGYGSVRFLGPVDLTGL---DLDEIFGKIVKFEP-REVTVYPDESSKPPVG 78

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 505271      540 HGLNVPAIITLENVYPVDKKTKKPMKDTTKfAEFQVFDRKLRSMREMNYISYNPFGGTWTFKVNHF 605
Cdd:pfam04096   79 QGLNVPATITLENVWPRDKDTKEPIKDPSG-PRLEKHIERLKRVQGTEFVSYDPETGTWTFKVEHF 143
Nup96 pfam12110
Nuclear protein 96; Nup96 (often known by the name of its yeast homolog Nup145C) is part of ...
 898-1150 8.08e-35

Nuclear protein 96; Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex.


Pssm-ID: 463462  Cd Length: 287  Bit Score: 135.03  E-value: 8.08e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      898 EQIFLYLLLNDVVRASKLAIESKNGHLSVLISYLGSnDPRIRDLAELQLQKWSTGG--CSIDKNISKIYKLLSGSP--FE 973
Cdd:pfam12110    1 EKAFALLTGHRVEEACELAIDSGDFRLATLLSQAGG-DDSFREDMAEQLDDWRESGvdSEIDEPRRKLYELLAGNVlvSE 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      974 GLFSLKELESEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFS--------LP------------------YDDPIGVI 1027
Cdd:pfam12110   80 GKKSTINISEGLDWKRAFGLRLWYGIPPDTSIEDAVEAYEEALSqgrepappLPwyleegdseswedprlkkREDLLYHL 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     1028 FQLYAanENTEKLYKEVRQRT---NALDVQFCWYLIQTLR--FNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCF 1102
Cdd:pfam12110  160 LKLYA--DPTAPLEAVLDPESsspDPLDYRLSWHLYQVLSavRLGYGHLSSAKADQLTLSFASQLESLGLWQWAVFVLLH 237

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|
gi 505271     1103 LNDDKAAEDTIKRLVMREITLLRASTND--HILNRLKIPSQLIFNAQALK 1150
Cdd:pfam12110  238 LEDPARRERAVRELLARHAELISEDDAKerFLTEKLKIPEAWIHEAKALY 287
Nucleoporin_FG pfam13634
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ...
 34-122 1.74e-17

Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.


Pssm-ID: 463941 [Multi-domain]  Cd Length: 90  Bit Score: 78.43  E-value: 1.74e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271       34 PQKSTGLFGNvnvnaNTSTPSPSGGLFNANSNANsisQQPANNSLFGNK-PAQPSGGLFGATNNTTSKSA-GSLFGNNNA 111
Cdd:pfam13634    7 TSTSGGLFGN-----TSTTAASGGGLFGAASTAT---ATTSGGGLFGNSsSNAPSGGLFGATNTTTQTATgGGLFGNNAA 78

                           90
                   ....*....|.
gi 505271      112 TANSTGSTGLF 122
Cdd:pfam13634   79 TTTSTTGGGLF 89
Nucleoporin_FG pfam13634
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ...
 89-209 2.56e-16

Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.


Pssm-ID: 463941 [Multi-domain]  Cd Length: 90  Bit Score: 75.35  E-value: 2.56e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271       89 GLFGATNNTTsksaGSLFGNNNATANSTGstGLFSGSNNIASSTQNGGLFGNsnnnnitsttqngglfgkpTTTPAGAGG 168
Cdd:pfam13634    1 GLFGAATSTS----GGLFGNTSTTAASGG--GLFGAASTATATTSGGGLFGN-------------------SSSNAPSGG 55

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 505271      169 LFGNSSSTNS---TTGLFGSNNTQSStgifgqkpgASTTGGLFG 209
Cdd:pfam13634   56 LFGATNTTTQtatGGGLFGNNAATTT---------STTGGGLFG 90
COG4625 COG4625
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ...
 5-327 7.11e-09

Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];


Pssm-ID: 443664 [Multi-domain]  Cd Length: 900  Bit Score: 60.56  E-value: 7.11e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      5 SVNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQPANNSLFGNKPA 84
Cdd:COG4625  313 GGGGGGGGGGGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGG 392

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     85 QPSGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGL-FGKPTTTP 163
Cdd:COG4625  393 GGGAGGGGGGGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAgAGGGSGSG 472

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271    164 AGAGGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFprsGETTGTMSTNPYGINISNVPMAVAD 243
Cdd:COG4625  473 AGTLTLTGNNTYTGTTTVNGGGNYTQSAGSTLAVEVDAANSDRLVVTGTATL---NGGTVVVLAGGYAPGTTYTILAVAA 549

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271    244 -----MPRSITSSLSDVNGKSDAEpkpiENRRTY-SFSSSVSGNAPLPLASQSSLVSR-LSTRLKATQKSTSPNEIFSPS 316
Cdd:COG4625  550 aldalAGNGDLSALYNALAALDAA----AARAALdQLSGEIHASAAAALLQASRALRDaLSNRLRALRGAGAAGDAAAEG 625

                        330
                 ....*....|.
gi 505271    317 YSkPWLNGAGS 327
Cdd:COG4625  626 WG-VWAQGFGS 635
PPE COG5651
PPE-repeat protein [Function unknown];
5-206 1.40e-07

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 55.28  E-value: 1.40e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      5 SVNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNA-NTSTPSPSGGLFNANSNAN------SISQQPANNS 77
Cdd:COG5651  174 ITNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSgPIGLNSGPGNTGFAGTGAAagaaaaAAAAAAAAGA 253

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     78 LFGNKPAQPSGGLFGATNNTTSKSAGSLFGNNNATANSTGST-GLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLF 156
Cdd:COG5651  254 GASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLaGGGAGAAAATGLGLGAGGAAGAAGATGAGAALGAGAA 333

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 505271    157 GKPTTTPAGAGGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGG 206
Cdd:COG5651  334 AAAAGAAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGA 383
dermokine cd21118
dermokine; Dermokine, also known as epidermis-specific secreted protein SK30/SK89, is a ...
 28-268 2.80e-05

dermokine; Dermokine, also known as epidermis-specific secreted protein SK30/SK89, is a skin-specific glycoprotein that may play a regulatory role in the crosstalk between barrier dysfunction and inflammation, and therefore play a role in inflammatory diseases such as psoriasis. Dermokine is one of the most highly expressed proteins in differentiating keratinocytes, found mainly in the spinous and granular layers of the epidermis, but also in the epithelia of the small intestine, macrophages of the lung, and endothelial cells of the lung. Mouse dermokine has been reported to be encoded by 22 exons, and its expression leads to alpha, beta, and gamma transcripts.


Pssm-ID: 411053 [Multi-domain]  Cd Length: 495  Bit Score: 48.46  E-value: 2.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     28 SSSLQFPQKSTGLFGnVNVNANTSTPSPSGGLFNANSNANSISQQP------ANNSLFGNKPAQPSGGLFGATNNTTSKS 101
Cdd:cd21118  144 PGGTGGPWASGGNYG-TNSLGGSVGQGGNGGPLNYGTNSQGAVAQPgygtvrGNNQNSGCTNPPPSGSHESFSNSGGSSS 222

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271    102 AGSLFGNNNATANSTGSTGlfsGSNNIASSTQNGGLFGNSNNNnitsttqnGGlfgkptttpaGAGGLFGNSSSTNSTTG 181
Cdd:cd21118  223 SGSSGSQGSHGSNGQGSSG---SSGGQGNGGNNGSSSSNSGNS--------GG----------SNGGSSGNSGSGSGGSS 281

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271    182 LFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFPRSGETTGTMSTNPYGINISNVPMAVADmprsITSSLSDVNGKSDA 261
Cdd:cd21118  282 SGGSNGWGGSSSSGGSGGSGGGNKPECNNPGNDVRMAGGGGSQGSKESSGSHGSNGGNGQAE----AVGGLNTLNSDAST 357


                 ....*..
gi 505271    262 EPKPIEN 268
Cdd:cd21118  358 LPFNFDT 364
holdfast_HfaD NF037936
holdfast anchor protein HfaD;
43-212 4.87e-03

holdfast anchor protein HfaD;


Pssm-ID: 468280 [Multi-domain]  Cd Length: 373  Bit Score: 40.94  E-value: 4.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      43 NVNVNANTS---TPSPSGGLFNANSNANSISQQPANNSLFGNKPAQPSGG---------LFGATNNTTSKSAGSlfGNNN 110
Cdd:NF037936  149 QADVLAEVGadvQYSPAPANFNATAVANAYQASSTNSSAQDLIVRQTNAAatvtartfvYYGNGWNIAANATAM--GNNL 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     111 ATANSTGSTglfsgsnNIASSTQNGGLFGNSNNNNITsttqnggLFGKPTTTPAGAgglfGNSSSTNSTTGLFGSNNTQS 190
Cdd:NF037936  227 VLANQGGSL-------DVDGDQTNSSYVRAQAEVTSY-------DFGQAQITAYGV----GNSAMAGNNGIYLNLDNTQL 288

                         170       180
                  ....*....|....*....|..
gi 505271     191 STGifgqkpGASTTGGLFGNNG 212
Cdd:NF037936  289 NTG------GVEALASFEGGNG 304
ser_rich_anae_1 NF033849
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 ...
 87-281 7.73e-03

serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 amino acids), which a highly serine-rich central region that averages over 300 aa in length. Species encoding members of this family of proteins tend to be anaerobic bacteria, including Gram-positive bacteria of the human gut microbiome and Chloroflexi from marine sediments.


Pssm-ID: 468206 [Multi-domain]  Cd Length: 1122  Bit Score: 40.76  E-value: 7.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      87 SGGLFGATNNTTSKSAGSLFGNNNATANSTGStGLFSGSNNIASSTQNGGlfgnsnnNNITSTTQNGGLFGKPTTTPAGA 166
Cdd:NF033849  292 SESESTGQSSSVGTSESQSHGTTEGTSTTDSS-SHSQSSSYNVSSGTGVS-------SSHSDGTSQSTSISHSESSSEST 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     167 GglFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNN-GASFprsGETTGTMSTNPYGINISNVPMAVAdmp 245
Cdd:NF033849  364 G--TSVGHSTSSSVSSSESSSRSSSSGVSGGFSGGIAGGGVTSEGlGASQ---GGSEGWGSGDSVQSVSQSYGSSSS--- 435

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 505271     246 RSITSSLSDVNGKSDaepkpienrrTYSFSSSVSGN 281
Cdd:NF033849  436 TGTSSGHSDSSSHST----------SSGQADSVSQG 461
34 PHA02584
long tail fiber, proximal subunit; Provisional
 3-243 7.83e-03

long tail fiber, proximal subunit; Provisional


Pssm-ID: 222890 [Multi-domain]  Cd Length: 1229  Bit Score: 40.89  E-value: 7.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271       3 NKSVNSGFTFgNQNTSTptSTPAQPSSSLQFPqkstglfGNVNVNANTSTPSPSGGLFNANSNA--NSISQQPANNSLFG 80
Cdd:PHA02584  904 DQTVNGSLTF-TKNTNL--SAPLVSSSTATFG-------GSVTANSTLTTQNTSNGTVVVVDETsiAFYSQNNTTGNIVF 973

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      81 NKPaqpsgglfGATNNTTSKSAGSLFGNNNATANS--TGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTtqngglfgk 158
Cdd:PHA02584  974 NID--------GTVDPINVNANGTLNATGVATNGRavYAEGGGIARTNNAARAITGGFTIRNDGSTTVFLL--------- 1036

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     159 pTTTPAGAGGLFGNSSSTNSTTglfgSNNTQSSTGIFGQKPGASTTGGLFGNNGAsfpRSGETTGTMSTNPYGINISNVP 238
Cdd:PHA02584 1037 -TAAGDQTGGFNGLKSLIINNA----NGQVTINDNYIINAGGTIMSGGLTVNSRI---RSQGTKASYTRAPTADTVGFWS 1108


                  ....*
gi 505271     239 MAVAD 243
Cdd:PHA02584 1109 VDIND 1113
 
Name Accession Description Interval E-value
Nucleoporin2 pfam04096
Nucleoporin autopeptidase; The nuclear pore complex protein plays a role in bidirectional ...
 460-605 1.97e-66

Nucleoporin autopeptidase; The nuclear pore complex protein plays a role in bidirectional transport across the nucleoporin complex in nucleocytoplasmic transport. The mammalian nuclear pore complex (NPC) is comprised of approximately 30 unique proteins, collectively known as nucleoporins. This family includes yeast family members such as Nup145p as well as vertebrate Nup98. The NUP C-terminal domains of Nup98 and Nup145 possess peptidase S59 autoproteolytic activity. The autoproteolytic sites of Nup98 and Nup145 each occur immediately C-terminal to the NUP C-terminal domain. Thus, although this domain occurs in the middle of each precursor polypeptide, it winds up at the C-terminal end of the N-terminal cleavage product. Cleavage of the peptide chains are necessary for the proper targeting to the nuclear pore.


Pssm-ID: 461171  Cd Length: 143  Bit Score: 220.44  E-value: 1.97e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      460 GYWCSPSPEQLERLSLKQLAAVSNFVIGRRGYGCITFQHDVDLTAFtksFREELFGKIVIFRSsKTVEVYPDEATKPMIG 539
Cdd:pfam04096    3 DYWTSPSLEELKKMSREQLSSVENFTVGRKGYGSVRFLGPVDLTGL---DLDEIFGKIVKFEP-REVTVYPDESSKPPVG 78

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 505271      540 HGLNVPAIITLENVYPVDKKTKKPMKDTTKfAEFQVFDRKLRSMREMNYISYNPFGGTWTFKVNHF 605
Cdd:pfam04096   79 QGLNVPATITLENVWPRDKDTKEPIKDPSG-PRLEKHIERLKRVQGTEFVSYDPETGTWTFKVEHF 143
Nup96 pfam12110
Nuclear protein 96; Nup96 (often known by the name of its yeast homolog Nup145C) is part of ...
 898-1150 8.08e-35

Nuclear protein 96; Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex.


Pssm-ID: 463462  Cd Length: 287  Bit Score: 135.03  E-value: 8.08e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      898 EQIFLYLLLNDVVRASKLAIESKNGHLSVLISYLGSnDPRIRDLAELQLQKWSTGG--CSIDKNISKIYKLLSGSP--FE 973
Cdd:pfam12110    1 EKAFALLTGHRVEEACELAIDSGDFRLATLLSQAGG-DDSFREDMAEQLDDWRESGvdSEIDEPRRKLYELLAGNVlvSE 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      974 GLFSLKELESEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFS--------LP------------------YDDPIGVI 1027
Cdd:pfam12110   80 GKKSTINISEGLDWKRAFGLRLWYGIPPDTSIEDAVEAYEEALSqgrepappLPwyleegdseswedprlkkREDLLYHL 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     1028 FQLYAanENTEKLYKEVRQRT---NALDVQFCWYLIQTLR--FNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCF 1102
Cdd:pfam12110  160 LKLYA--DPTAPLEAVLDPESsspDPLDYRLSWHLYQVLSavRLGYGHLSSAKADQLTLSFASQLESLGLWQWAVFVLLH 237

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|
gi 505271     1103 LNDDKAAEDTIKRLVMREITLLRASTND--HILNRLKIPSQLIFNAQALK 1150
Cdd:pfam12110  238 LEDPARRERAVRELLARHAELISEDDAKerFLTEKLKIPEAWIHEAKALY 287
Nucleoporin_FG pfam13634
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ...
 34-122 1.74e-17

Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.


Pssm-ID: 463941 [Multi-domain]  Cd Length: 90  Bit Score: 78.43  E-value: 1.74e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271       34 PQKSTGLFGNvnvnaNTSTPSPSGGLFNANSNANsisQQPANNSLFGNK-PAQPSGGLFGATNNTTSKSA-GSLFGNNNA 111
Cdd:pfam13634    7 TSTSGGLFGN-----TSTTAASGGGLFGAASTAT---ATTSGGGLFGNSsSNAPSGGLFGATNTTTQTATgGGLFGNNAA 78

                           90
                   ....*....|.
gi 505271      112 TANSTGSTGLF 122
Cdd:pfam13634   79 TTTSTTGGGLF 89
Nucleoporin_FG pfam13634
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ...
 39-139 1.98e-17

Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.


Pssm-ID: 463941 [Multi-domain]  Cd Length: 90  Bit Score: 78.43  E-value: 1.98e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271       39 GLFGnvnvnantSTPSPSGGLFNANSNansisQQPANNSLFG----NKPAQPSGGLFGATNNTTskSAGSLFGNNNATAN 114
Cdd:pfam13634    1 GLFG--------AATSTSGGLFGNTST-----TAASGGGLFGaastATATTSGGGLFGNSSSNA--PSGGLFGATNTTTQ 65

                           90       100
                   ....*....|....*....|....*
gi 505271      115 STGSTGLFSGSNNIASSTQNGGLFG 139
Cdd:pfam13634   66 TATGGGLFGNNAATTTSTTGGGLFG 90
Nucleoporin_FG pfam13634
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ...
 89-209 2.56e-16

Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.


Pssm-ID: 463941 [Multi-domain]  Cd Length: 90  Bit Score: 75.35  E-value: 2.56e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271       89 GLFGATNNTTsksaGSLFGNNNATANSTGstGLFSGSNNIASSTQNGGLFGNsnnnnitsttqngglfgkpTTTPAGAGG 168
Cdd:pfam13634    1 GLFGAATSTS----GGLFGNTSTTAASGG--GLFGAASTATATTSGGGLFGN-------------------SSSNAPSGG 55

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 505271      169 LFGNSSSTNS---TTGLFGSNNTQSStgifgqkpgASTTGGLFG 209
Cdd:pfam13634   56 LFGATNTTTQtatGGGLFGNNAATTT---------STTGGGLFG 90
Nucleoporin_FG pfam13634
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ...
 70-171 2.75e-14

Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.


Pssm-ID: 463941 [Multi-domain]  Cd Length: 90  Bit Score: 69.57  E-value: 2.75e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271       70 SQQPANNSLFGNKPAQP--SGGLFGATNNTTSK-SAGSLFGNNNATansTGSTGLFSGSNNIASSTQNGGLFGNsnnnni 146
Cdd:pfam13634    5 AATSTSGGLFGNTSTTAasGGGLFGAASTATATtSGGGLFGNSSSN---APSGGLFGATNTTTQTATGGGLFGN------ 75

                           90       100
                   ....*....|....*....|....*
gi 505271      147 tsttqngglfGKPTTTPAGAGGLFG 171
Cdd:pfam13634   76 ----------NAATTTSTTGGGLFG 90
Nucleoporin_FG pfam13634
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ...
 154-214 9.61e-12

Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.


Pssm-ID: 463941 [Multi-domain]  Cd Length: 90  Bit Score: 62.25  E-value: 9.61e-12
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 505271      154 GLFGKPTTTpagAGGLFGNSSSTNSTT-GLFGSNNTQSST----GIFGQKPGASTTGGLFGNNGAS 214
Cdd:pfam13634    1 GLFGAATST---SGGLFGNTSTTAASGgGLFGAASTATATtsggGLFGNSSSNAPSGGLFGATNTT 63
Nucleoporin_FG pfam13634
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ...
 3-80 5.45e-09

Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.


Pssm-ID: 463941 [Multi-domain]  Cd Length: 90  Bit Score: 54.54  E-value: 5.45e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 505271        3 NKSVNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNvnvNANTSTPSPSGGLFNANSNANsisQQPANNSLFG 80
Cdd:pfam13634   19 TTAASGGGLFGAASTATATTSGGGLFGNSSSNAPSGGLFGA---TNTTTQTATGGGLFGNNAATT---TSTTGGGLFG 90
COG4625 COG4625
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ...
 5-327 7.11e-09

Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];


Pssm-ID: 443664 [Multi-domain]  Cd Length: 900  Bit Score: 60.56  E-value: 7.11e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      5 SVNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQPANNSLFGNKPA 84
Cdd:COG4625  313 GGGGGGGGGGGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGG 392

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     85 QPSGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGL-FGKPTTTP 163
Cdd:COG4625  393 GGGAGGGGGGGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAgAGGGSGSG 472

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271    164 AGAGGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFprsGETTGTMSTNPYGINISNVPMAVAD 243
Cdd:COG4625  473 AGTLTLTGNNTYTGTTTVNGGGNYTQSAGSTLAVEVDAANSDRLVVTGTATL---NGGTVVVLAGGYAPGTTYTILAVAA 549

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271    244 -----MPRSITSSLSDVNGKSDAEpkpiENRRTY-SFSSSVSGNAPLPLASQSSLVSR-LSTRLKATQKSTSPNEIFSPS 316
Cdd:COG4625  550 aldalAGNGDLSALYNALAALDAA----AARAALdQLSGEIHASAAAALLQASRALRDaLSNRLRALRGAGAAGDAAAEG 625

                        330
                 ....*....|.
gi 505271    317 YSkPWLNGAGS 327
Cdd:COG4625  626 WG-VWAQGFGS 635
PPE COG5651
PPE-repeat protein [Function unknown];
5-206 1.40e-07

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 55.28  E-value: 1.40e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      5 SVNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNA-NTSTPSPSGGLFNANSNAN------SISQQPANNS 77
Cdd:COG5651  174 ITNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSgPIGLNSGPGNTGFAGTGAAagaaaaAAAAAAAAGA 253

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     78 LFGNKPAQPSGGLFGATNNTTSKSAGSLFGNNNATANSTGST-GLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLF 156
Cdd:COG5651  254 GASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLaGGGAGAAAATGLGLGAGGAAGAAGATGAGAALGAGAA 333

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 505271    157 GKPTTTPAGAGGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGG 206
Cdd:COG5651  334 AAAAGAAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGA 383
COG4625 COG4625
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ...
 6-298 3.26e-07

Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];


Pssm-ID: 443664 [Multi-domain]  Cd Length: 900  Bit Score: 55.17  E-value: 3.26e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      6 VNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQPANNSLFGNKPAQ 85
Cdd:COG4625  218 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGG 297

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     86 PSGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLFGKPTTTPAG 165
Cdd:COG4625  298 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGS 377

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271    166 AGGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFPRSGETTGTMSTNPYGINISNVPMAVADMP 245
Cdd:COG4625  378 GGGGAGGGGGSGGGGGGGAGGGGGGGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAG 457

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 505271    246 RSITSSLSDVNGKSDAEPKPIENRRTYSFSSSVSGNAPLPLASQSSLVSRLST 298
Cdd:COG4625  458 GSGGGAGAGGGSGSGAGTLTLTGNNTYTGTTTVNGGGNYTQSAGSTLAVEVDA 510
Nucleoporin_FG2 pfam15967
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of ...
 8-238 3.77e-07

Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of chordate nucleoporins. The proteins carry many repeats of the FG sequence motif.


Pssm-ID: 435043 [Multi-domain]  Cd Length: 586  Bit Score: 54.67  E-value: 3.77e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271        8 SGFTFGNQNTSTPT---------STPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPSGGLFnansnansiSQQPANNSL 78
Cdd:pfam15967    2 SGFSFGGGPGSTATagggfsfgaAAASNPGSTGGFSFGTLGAAPAATATTTTATLGLGGGLF---------GQKPATGFT 72

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271       79 FGN-----KPAQPSGGLFGATNNTTSKSAGSLFGNNNATANSTGstglFSGSnniASSTQNGGL-FGNSNNNNITSTTQN 152
Cdd:pfam15967   73 FGTpasstAATGPTGLTLGTPAATTAASTGFSLGFNKPAASATP----FSLP---ASSTSGGGLsLGSVLTSTAAQQGAT 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      153 G---GLFGKPTTTPAGA-------------GGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGL-FGNngASF 215
Cdd:pfam15967  146 GftlNLGGTPATTTAVStglslgstltslgGSLFQNTNSTGLGQTTLGLTLLATSTAPVSAPAASEGLGGLdFST--SSE 223

                          250       260
                   ....*....|....*....|...
gi 505271      216 PRSGETTGTMSTNPYGINISNVP 238
Cdd:pfam15967  224 KKSDKASGTRPEDSKALKDENLP 246
COG4935 COG4935
Regulatory P domain of the subtilisin-like proprotein convertases and other proteases ...
 6-253 3.00e-06

Regulatory P domain of the subtilisin-like proprotein convertases and other proteases [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443962 [Multi-domain]  Cd Length: 641  Bit Score: 51.75  E-value: 3.00e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      6 VNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQPANNSLFGNKPAQ 85
Cdd:COG4935  306 GNAAAAAAASAGSGGGGGSAAAAGAAAAAAAAAAGAAAGVSGAASVVAGASGGGAGTAAAAGGGAAAAAAGGAAAAGAAA 385

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     86 PSGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGlfgkPTTTPAG 165
Cdd:COG4935  386 GAAAGAAAGAAAAGGVASAAGAVGAGTAAGASATAAVSTGAASGSSTTSSTGTTATATGLGGGADAGST----STGTGSA 461

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271    166 AGGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFPRSGETTGTMSTNPYGINISNVPMAVADMP 245
Cdd:COG4935  462 AGAAGGTTTATSGLASSTTAAAAAAAAGLATTAAVAAGAAGAAAAAATAASVGGATGAAGTTNSTATFSNTTDVAIPDNG 541


                 ....*....
gi 505271    246 RS-ITSSLS 253
Cdd:COG4935  542 PAgVTSTIT 550
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 17-309 1.02e-05

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 49.91  E-value: 1.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271       17 TSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPsgglfNANSNANSISQQPANNSLFGNKPAQPSGGLFGATNN 96
Cdd:pfam05109  515 TPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTP-----NATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTPN 589

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271       97 TTSKSAGSLFGNNNATANSTGST---------------GLFSGSNNI-ASSTQNGGLFGNSNNNNITSTTQNGGLFGKPT 160
Cdd:pfam05109  590 ATSPTVGETSPQANTTNHTLGGTsstpvvtsppknatsAVTTGQHNItSSSTSSMSLRPSSISETLSPSTSDNSTSHMPL 669

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      161 TTPAGAGGLFGNSSSTNSTTglfgsNNTQSSTGIFGQKPGASTTGGLFGNNGASfPRSGETTGTMSTNPYGINISNVPMA 240
Cdd:pfam05109  670 LTSAHPTGGENITQVTPAST-----STHHVSTSSPAPRPGTTSQASGPGNSSTS-TKPGEVNVTKGTPPKNATSPQAPSG 743

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 505271      241 VADMPRSITSSLSDVNGKSDAEPKPIENRRTYSF-SSSVSGNAPLPLA---SQSSLVSRLSTRLKATQKSTSP 309
Cdd:pfam05109  744 QKTAVPTVTSTGGKANSTTGGKHTTGHGARTSTEpTTDYGGDSTTPRTrynATTYLPPSTSSKLRPRWTFTSP 816
COG4625 COG4625
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ...
 5-215 2.10e-05

Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];


Pssm-ID: 443664 [Multi-domain]  Cd Length: 900  Bit Score: 49.01  E-value: 2.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      5 SVNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQpANNSLFGNKPA 84
Cdd:COG4625  287 SGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGG-AGGGGGGGTGG 365

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     85 QPSGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLFGKPTTTPA 164
Cdd:COG4625  366 GGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGGGGGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGA 445

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 505271    165 GAGGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASF 215
Cdd:COG4625  446 TGGGGGGGGGAGGSGGGAGAGGGSGSGAGTLTLTGNNTYTGTTTVNGGGNY 496
Nucleoporin_FG2 pfam15967
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of ...
 1-133 2.26e-05

Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of chordate nucleoporins. The proteins carry many repeats of the FG sequence motif.


Pssm-ID: 435043 [Multi-domain]  Cd Length: 586  Bit Score: 48.90  E-value: 2.26e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271        1 MFNKSVNSGFTFGNQNTSTPTS--------TPAQPSSSlqfpqkSTGLFGNVNVNANTSTP------SPSGGLFNANSNA 66
Cdd:pfam15967   62 LFGQKPATGFTFGTPASSTAATgptgltlgTPAATTAA------STGFSLGFNKPAASATPfslpasSTSGGGLSLGSVL 135

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505271       67 NSISQQPANNSL---FGNKPAQPSGGLFGATNNTTSKS-AGSLFGNNNATANSTGSTGLFSGSNNIASSTQ 133
Cdd:pfam15967  136 TSTAAQQGATGFtlnLGGTPATTTAVSTGLSLGSTLTSlGGSLFQNTNSTGLGQTTLGLTLLATSTAPVSA 206
dermokine cd21118
dermokine; Dermokine, also known as epidermis-specific secreted protein SK30/SK89, is a ...
 28-268 2.80e-05

dermokine; Dermokine, also known as epidermis-specific secreted protein SK30/SK89, is a skin-specific glycoprotein that may play a regulatory role in the crosstalk between barrier dysfunction and inflammation, and therefore play a role in inflammatory diseases such as psoriasis. Dermokine is one of the most highly expressed proteins in differentiating keratinocytes, found mainly in the spinous and granular layers of the epidermis, but also in the epithelia of the small intestine, macrophages of the lung, and endothelial cells of the lung. Mouse dermokine has been reported to be encoded by 22 exons, and its expression leads to alpha, beta, and gamma transcripts.


Pssm-ID: 411053 [Multi-domain]  Cd Length: 495  Bit Score: 48.46  E-value: 2.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     28 SSSLQFPQKSTGLFGnVNVNANTSTPSPSGGLFNANSNANSISQQP------ANNSLFGNKPAQPSGGLFGATNNTTSKS 101
Cdd:cd21118  144 PGGTGGPWASGGNYG-TNSLGGSVGQGGNGGPLNYGTNSQGAVAQPgygtvrGNNQNSGCTNPPPSGSHESFSNSGGSSS 222

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271    102 AGSLFGNNNATANSTGSTGlfsGSNNIASSTQNGGLFGNSNNNnitsttqnGGlfgkptttpaGAGGLFGNSSSTNSTTG 181
Cdd:cd21118  223 SGSSGSQGSHGSNGQGSSG---SSGGQGNGGNNGSSSSNSGNS--------GG----------SNGGSSGNSGSGSGGSS 281

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271    182 LFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFPRSGETTGTMSTNPYGINISNVPMAVADmprsITSSLSDVNGKSDA 261
Cdd:cd21118  282 SGGSNGWGGSSSSGGSGGSGGGNKPECNNPGNDVRMAGGGGSQGSKESSGSHGSNGGNGQAE----AVGGLNTLNSDAST 357


                 ....*..
gi 505271    262 EPKPIEN 268
Cdd:cd21118  358 LPFNFDT 364
COG4935 COG4935
Regulatory P domain of the subtilisin-like proprotein convertases and other proteases ...
 37-279 8.85e-05

Regulatory P domain of the subtilisin-like proprotein convertases and other proteases [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443962 [Multi-domain]  Cd Length: 641  Bit Score: 46.74  E-value: 8.85e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     37 STGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQPANNSLFGNKPAQPSGGLFGATNNTTSKSAGSLFGNNNATANST 116
Cdd:COG4935  301 GAAGTGNAAAAAAASAGSGGGGGSAAAAGAAAAAAAAAAGAAAGVSGAASVVAGASGGGAGTAAAAGGGAAAAAAGGAAA 380

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271    117 GSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLFGKPTTTPAGAGGLFGNSSSTNSTTGLFGSNNTQSSTGIFG 196
Cdd:COG4935  381 AGAAAGAAAGAAAGAAAAGGVASAAGAVGAGTAAGASATAAVSTGAASGSSTTSSTGTTATATGLGGGADAGSTSTGTGS 460

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271    197 QKPGA-------STTGGLFGNNGASFPRSGETTGTMSTNPYGINISNVPMAVADMPRSITSSLSDVNGKSDAEPKPIENR 269
Cdd:COG4935  461 AAGAAggtttatSGLASSTTAAAAAAAAGLATTAAVAAGAAGAAAAAATAASVGGATGAAGTTNSTATFSNTTDVAIPDN 540

                        250
                 ....*....|
gi 505271    270 RTYSFSSSVS 279
Cdd:COG4935  541 GPAGVTSTIT 550
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 5-236 2.43e-04

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 45.91  E-value: 2.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      5 SVNSGFTFGNQNTSTPTSTPAQPSSSLQFpqkSTGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQPANNSLFGNKPA 84
Cdd:COG3210  506 DANGIATGLTGITAGGGGGGNATSGGTGG---DGTTLSGSGLTTTVSGGASGTTAASGSNTANTLGVLAATGGTSNATTA 582

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     85 QPSGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLFGKPTTTPA 164
Cdd:COG3210  583 GNSTSATGGTGTNSGGTVLSIGTGSAGATGTITLGAGTSGAGANATGGGAGLTGSAVGAALSGTGSGTTGTASANGSNTT 662

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 505271    165 GAGGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFPRSGETTGTMSTNPYGINISN 236
Cdd:COG3210  663 GVNTAGGTGGGTTGTVTSGATGGTTGTTLNAATGGTLNNAGNTLTISTGSITVTGQIGALANANGDTVTFGN 734
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 7-257 2.85e-04

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 45.53  E-value: 2.85e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      7 NSGFTFGNQNTSTPTSTPAQPSSSLQfpqkSTGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQPANNSLFGNKPAQP 86
Cdd:COG3210  763 ANTTASGTTLTLANANGNTSAGATLD----NAGAEISIDITADGTITAAGTTAINVTGSGGTITINTATTGLTGTGDTTS 838

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     87 SGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLFGKPTTTPAGA 166
Cdd:COG3210  839 GAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGSGGVATSTGTANAGTLTNLGTTTNAASGNGAVLATVTA 918

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271    167 GGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFPRSGETTGTMSTNPYGINISNVPMAVADMPR 246
Cdd:COG3210  919 TGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASDGAGDTGASSAAGSSAVGTSANSAGSTGGVIAATGILV 998

                        250
                 ....*....|.
gi 505271    247 SITSSLSDVNG 257
Cdd:COG3210  999 AGNSGTTASTT 1009
PPE COG5651
PPE-repeat protein [Function unknown];
83-242 1.10e-03

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 42.96  E-value: 1.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     83 PAQP---SGGLFGATN-NTTSKSAGSLFGNNNATA-NSTGSTGLFSGSNNIA--SSTQNGGLFGNSNNNNITSTTQNGGL 155
Cdd:COG5651  170 PPPTitnPGGLLGAQNaGSGNTSSNPGFANLGLTGlNQVGIGGLNSGSGPIGlnSGPGNTGFAGTGAAAGAAAAAAAAAA 249

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271    156 FGKPTTTPAGAGGLFGnssSTNSTTGLFGSNNTQSSTGIFGqkPGASTTGGLFGNNGASFPRSGETTGTMSTNPYGINIS 235
Cdd:COG5651  250 AAGAGASAALASLAAT---LLNASSLGLAATAASSAATNLG--LAGSPLGLAGGGAGAAAATGLGLGAGGAAGAAGATGA 324


                 ....*..
gi 505271    236 NVPMAVA 242
Cdd:COG5651  325 GAALGAG 331
COG4935 COG4935
Regulatory P domain of the subtilisin-like proprotein convertases and other proteases ...
 5-192 1.23e-03

Regulatory P domain of the subtilisin-like proprotein convertases and other proteases [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443962 [Multi-domain]  Cd Length: 641  Bit Score: 43.27  E-value: 1.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      5 SVNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQPANNSLFGNKPA 84
Cdd:COG4935  359 GAGTAAAAGGGAAAAAAGGAAAAGAAAGAAAGAAAGAAAAGGVASAAGAVGAGTAAGASATAAVSTGAASGSSTTSSTGT 438

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     85 QPSGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLFGKPTTTPA 164
Cdd:COG4935  439 TATATGLGGGADAGSTSTGTGSAAGAAGGTTTATSGLASSTTAAAAAAAAGLATTAAVAAGAAGAAAAAATAASVGGATG 518

                        170       180       190
                 ....*....|....*....|....*....|
gi 505271    165 GAGGLFGNSSSTNSTTGLFGSNNTQ--SST 192
Cdd:COG4935  519 AAGTTNSTATFSNTTDVAIPDNGPAgvTST 548
COG3979 COG3979
Chitodextrinase [Carbohydrate transport and metabolism];
3-231 3.81e-03

Chitodextrinase [Carbohydrate transport and metabolism];


Pssm-ID: 443178 [Multi-domain]  Cd Length: 369  Bit Score: 41.30  E-value: 3.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      3 NKSVNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQPANN--SLFG 80
Cdd:COG3979   76 NVSAASGTSTAMFGGSSTTLGSAEGVADTSGNLAASGAFFGVTTPPTPSSTLVVDGTTTVNAAATANGGTGGSGgtTTII 155

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     81 NKPAQPSGGLFGATNNTTSKSAGSLFGNNNATANSTGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLFGKPT 160
Cdd:COG3979  156 TTGVEGGGGSKTAQSLNAITAAGTAALNGGVVGGADEVLTCSAVKDDGSGGAGAGNTYWALNTLGVSDTPSGTTATGGTV 235

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 505271    161 TTPAGAGGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFPRSGETTGTMSTNPYG 231
Cdd:COG3979  236 GITSAYGAGVSGNAAVNVNAGFVVGNVGGAAGNTGTTSGTATSDAATNDVGDAAVTGLNDGAANGPTGGYG 306
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 5-237 4.28e-03

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 41.68  E-value: 4.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      5 SVNSGFTFGNQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPSGG---LFNANSNANSISQQPANNSLFGN 81
Cdd:COG3210  665 NTAGGTGGGTTGTVTSGATGGTTGTTLNAATGGTLNNAGNTLTISTGSITVTGQigaLANANGDTVTFGNLGTGATLTLN 744

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     82 KPAQPSGGLFGA---TNNTTSKSAGSLFGNNNATANSTGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTTQNGGLfgk 158
Cdd:COG3210  745 AGVTITSGNAGTlsiGLTANTTASGTTLTLANANGNTSAGATLDNAGAEISIDITADGTITAAGTTAINVTGSGGTI--- 821

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 505271    159 pTTTPAGAGGLFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNNGASFPRSGETTGTMSTNPYGINISNV 237
Cdd:COG3210  822 -TINTATTGLTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGSGGVATSTGTANAGTLTNL 899
holdfast_HfaD NF037936
holdfast anchor protein HfaD;
43-212 4.87e-03

holdfast anchor protein HfaD;


Pssm-ID: 468280 [Multi-domain]  Cd Length: 373  Bit Score: 40.94  E-value: 4.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      43 NVNVNANTS---TPSPSGGLFNANSNANSISQQPANNSLFGNKPAQPSGG---------LFGATNNTTSKSAGSlfGNNN 110
Cdd:NF037936  149 QADVLAEVGadvQYSPAPANFNATAVANAYQASSTNSSAQDLIVRQTNAAatvtartfvYYGNGWNIAANATAM--GNNL 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     111 ATANSTGSTglfsgsnNIASSTQNGGLFGNSNNNNITsttqnggLFGKPTTTPAGAgglfGNSSSTNSTTGLFGSNNTQS 190
Cdd:NF037936  227 VLANQGGSL-------DVDGDQTNSSYVRAQAEVTSY-------DFGQAQITAYGV----GNSAMAGNNGIYLNLDNTQL 288

                         170       180
                  ....*....|....*....|..
gi 505271     191 STGifgqkpGASTTGGLFGNNG 212
Cdd:NF037936  289 NTG------GVEALASFEGGNG 304
ser_rich_anae_1 NF033849
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 ...
 87-281 7.73e-03

serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 amino acids), which a highly serine-rich central region that averages over 300 aa in length. Species encoding members of this family of proteins tend to be anaerobic bacteria, including Gram-positive bacteria of the human gut microbiome and Chloroflexi from marine sediments.


Pssm-ID: 468206 [Multi-domain]  Cd Length: 1122  Bit Score: 40.76  E-value: 7.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      87 SGGLFGATNNTTSKSAGSLFGNNNATANSTGStGLFSGSNNIASSTQNGGlfgnsnnNNITSTTQNGGLFGKPTTTPAGA 166
Cdd:NF033849  292 SESESTGQSSSVGTSESQSHGTTEGTSTTDSS-SHSQSSSYNVSSGTGVS-------SSHSDGTSQSTSISHSESSSEST 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     167 GglFGNSSSTNSTTGLFGSNNTQSSTGIFGQKPGASTTGGLFGNN-GASFprsGETTGTMSTNPYGINISNVPMAVAdmp 245
Cdd:NF033849  364 G--TSVGHSTSSSVSSSESSSRSSSSGVSGGFSGGIAGGGVTSEGlGASQ---GGSEGWGSGDSVQSVSQSYGSSSS--- 435

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 505271     246 RSITSSLSDVNGKSDaepkpienrrTYSFSSSVSGN 281
Cdd:NF033849  436 TGTSSGHSDSSSHST----------SSGQADSVSQG 461
34 PHA02584
long tail fiber, proximal subunit; Provisional
 3-243 7.83e-03

long tail fiber, proximal subunit; Provisional


Pssm-ID: 222890 [Multi-domain]  Cd Length: 1229  Bit Score: 40.89  E-value: 7.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271       3 NKSVNSGFTFgNQNTSTptSTPAQPSSSLQFPqkstglfGNVNVNANTSTPSPSGGLFNANSNA--NSISQQPANNSLFG 80
Cdd:PHA02584  904 DQTVNGSLTF-TKNTNL--SAPLVSSSTATFG-------GSVTANSTLTTQNTSNGTVVVVDETsiAFYSQNNTTGNIVF 973

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271      81 NKPaqpsgglfGATNNTTSKSAGSLFGNNNATANS--TGSTGLFSGSNNIASSTQNGGLFGNSNNNNITSTtqngglfgk 158
Cdd:PHA02584  974 NID--------GTVDPINVNANGTLNATGVATNGRavYAEGGGIARTNNAARAITGGFTIRNDGSTTVFLL--------- 1036

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 505271     159 pTTTPAGAGGLFGNSSSTNSTTglfgSNNTQSSTGIFGQKPGASTTGGLFGNNGAsfpRSGETTGTMSTNPYGINISNVP 238
Cdd:PHA02584 1037 -TAAGDQTGGFNGLKSLIINNA----NGQVTINDNYIINAGGTIMSGGLTVNSRI---RSQGTKASYTRAPTADTVGFWS 1108


                  ....*
gi 505271     239 MAVAD 243
Cdd:PHA02584 1109 VDIND 1113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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