NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1620933|emb|CAB01843|]
View 

argJ, partial [Bacillus subtilis]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ArgJ super family cl46570
ArgJ family; Members of the ArgJ family catalyze the first EC:2.3.1.1 and fifth steps EC:2.3.1. ...
 34-80 4.39e-15

ArgJ family; Members of the ArgJ family catalyze the first EC:2.3.1.1 and fifth steps EC:2.3.1.35 in arginine biosynthesis.


The actual alignment was detected with superfamily member pfam01960:

Pssm-ID: 460396  Cd Length: 373  Bit Score: 67.77  E-value: 4.39e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1620933     34 SKKDLGVIISETPAVSAAVYTQSHFQAAPIKVTQDSLKHGpTLKAVI 80
Cdd:pfam01960   1 KKKDLALIVSDVPASAAGVFTTNRVKAAPVLVSREHLADG-RARAVV 46
 
Name Accession Description Interval E-value
ArgJ pfam01960
ArgJ family; Members of the ArgJ family catalyze the first EC:2.3.1.1 and fifth steps EC:2.3.1. ...
 34-80 4.39e-15

ArgJ family; Members of the ArgJ family catalyze the first EC:2.3.1.1 and fifth steps EC:2.3.1.35 in arginine biosynthesis.


Pssm-ID: 460396  Cd Length: 373  Bit Score: 67.77  E-value: 4.39e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1620933     34 SKKDLGVIISETPAVSAAVYTQSHFQAAPIKVTQDSLKHGpTLKAVI 80
Cdd:pfam01960   1 KKKDLALIVSDVPASAAGVFTTNRVKAAPVLVSREHLADG-RARAVV 46
 
Name Accession Description Interval E-value
ArgJ pfam01960
ArgJ family; Members of the ArgJ family catalyze the first EC:2.3.1.1 and fifth steps EC:2.3.1. ...
 34-80 4.39e-15

ArgJ family; Members of the ArgJ family catalyze the first EC:2.3.1.1 and fifth steps EC:2.3.1.35 in arginine biosynthesis.


Pssm-ID: 460396  Cd Length: 373  Bit Score: 67.77  E-value: 4.39e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1620933     34 SKKDLGVIISETPAVSAAVYTQSHFQAAPIKVTQDSLKHGpTLKAVI 80
Cdd:pfam01960   1 KKKDLALIVSDVPASAAGVFTTNRVKAAPVLVSREHLADG-RARAVV 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH