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Conserved domains on  [gi|21616104|emb|CAD21938|]
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putative complement factor Bf/C2 [Tetraodon nigroviridis]

Protein Classification

vWA_complement_factors and Tryp_SPc domain-containing protein( domain architecture ID 13332040)

protein containing domains CCP, vWA_complement_factors, and Tryp_SPc

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
vWA_complement_factors cd01470
Complement factors B and C2 are two critical proteases for complement activation. They both ...
254-453 1.52e-97

Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.


:

Pssm-ID: 238747 [Multi-domain]  Cd Length: 198  Bit Score: 300.36  E-value: 1.52e-97
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 254 LNIYIAVDISESIQKDHVESAKKAILKLITKISSFSVSPNYELLFFSSELSEVVNILDFFENQPVDIKGRLTKFKVNAEH 333
Cdd:cd01470   1 LNIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIRDFNSNDADDVIKRLEDFNYDDHG 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 334 --TGTDLNLAFKTILERMALIKQRvGEKAFEEHRHAIIVFTDGVYNMGGSPLPTVAKIKHMVYMNKIDEetgqNPRDEYL 411
Cdd:cd01470  81 dkTGTNTAAALKKVYERMALEKVR-NKEAFNETRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSD----NPREDYL 155
                       170       180       190       200
                ....*....|....*....|....*....|....*....|...
gi 21616104 412 DIYIFGIGAEIYDSDLRPLTAGTGGE-HFFKLLEIQNLQETFD 453
Cdd:cd01470 156 DVYVFGVGDDVNKEELNDLASKKDNErHFFKLKDYEDLQEVFD 198
Tryp_SPc cd00190
Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens ...
478-709 8.45e-39

Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.


:

Pssm-ID: 238113 [Multi-domain]  Cd Length: 232  Bit Score: 143.57  E-value: 8.45e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 478 DSTRNMFPWKAAITVQVNvSAYCLGSLVSPQFILTAAHCFT-FGDESEHVTVEIDDGN-----GKYKKVKTFKLHPNYNI 551
Cdd:cd00190   6 EAKIGSFPWQVSLQYTGG-RHFCGGSLISPRWVLTAAHCVYsSAPSNYTVRLGSHDLSsneggGQVIKVKKVIVHPNYNP 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 552 NakadegvkeFYDYDVALIQLMEDVQISPSVRPICIPCTQETsnalgLVGNSTC------KQQEEKLLATQLeklfflts 625
Cdd:cd00190  85 S---------TYDNDIALLKLKRPVTLSDNVRPICLPSSGYN-----LPAGTTCtvsgwgRTSEGGPLPDVL-------- 142
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 626 kgsitqkKEAHAKLGDNrDECIRYaldaegiktTNPKIPVTDNFICTGGqtPFRDHIACTGDSGGAVFKNYEHRTVQVAL 705
Cdd:cd00190 143 -------QEVNVPIVSN-AECKRA---------YSYGGTITDNMLCAGG--LEGGKDACQGDSGGPLVCNDNGRGVLVGI 203

                ....
gi 21616104 706 VSWG 709
Cdd:cd00190 204 VSWG 207
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
91-146 8.38e-16

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


:

Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 72.11  E-value: 8.38e-16
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 21616104  91 CPDPNVLISGNVSPPQEKYYVDNETTYECDSGYTLRGSSRRICLPNGKWSGSTPIC 146
Cdd:cd00033   1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTC 56
PHA02927 super family cl33700
secreted complement-binding protein; Provisional
45-207 2.82e-11

secreted complement-binding protein; Provisional


The actual alignment was detected with superfamily member PHA02927:

Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 64.67  E-value: 2.82e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104   45 GSMLIYYCPEGYYPYPYLTRVCQPNGTwkSARVSRRALPQrCRLVECPDPNVLISGNVSPPQEKYYVDNETTYECDSGYT 124
Cdd:PHA02927 105 GSSITYSCNSGYQLIGESKSYCELGST--GSMVWNPEAPI-CESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYS 181
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104  125 LRGSSRRIClPNGKWSgSTPICSRDTgdhCADPGIPAGAMRSG--NIFGIDDKVKYSCIDKLFLMGSSERKCLESGQWTG 202
Cdd:PHA02927 182 LIGNSGVLC-SGGEWS-DPPTCQIVK---CPHPTISNGYLSSGfkRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQP 256

                 ....*
gi 21616104  203 NEPAC 207
Cdd:PHA02927 257 ELPKC 261
 
Name Accession Description Interval E-value
vWA_complement_factors cd01470
Complement factors B and C2 are two critical proteases for complement activation. They both ...
254-453 1.52e-97

Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.


Pssm-ID: 238747 [Multi-domain]  Cd Length: 198  Bit Score: 300.36  E-value: 1.52e-97
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 254 LNIYIAVDISESIQKDHVESAKKAILKLITKISSFSVSPNYELLFFSSELSEVVNILDFFENQPVDIKGRLTKFKVNAEH 333
Cdd:cd01470   1 LNIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIRDFNSNDADDVIKRLEDFNYDDHG 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 334 --TGTDLNLAFKTILERMALIKQRvGEKAFEEHRHAIIVFTDGVYNMGGSPLPTVAKIKHMVYMNKIDEetgqNPRDEYL 411
Cdd:cd01470  81 dkTGTNTAAALKKVYERMALEKVR-NKEAFNETRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSD----NPREDYL 155
                       170       180       190       200
                ....*....|....*....|....*....|....*....|...
gi 21616104 412 DIYIFGIGAEIYDSDLRPLTAGTGGE-HFFKLLEIQNLQETFD 453
Cdd:cd01470 156 DVYVFGVGDDVNKEELNDLASKKDNErHFFKLKDYEDLQEVFD 198
Tryp_SPc cd00190
Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens ...
478-709 8.45e-39

Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.


Pssm-ID: 238113 [Multi-domain]  Cd Length: 232  Bit Score: 143.57  E-value: 8.45e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 478 DSTRNMFPWKAAITVQVNvSAYCLGSLVSPQFILTAAHCFT-FGDESEHVTVEIDDGN-----GKYKKVKTFKLHPNYNI 551
Cdd:cd00190   6 EAKIGSFPWQVSLQYTGG-RHFCGGSLISPRWVLTAAHCVYsSAPSNYTVRLGSHDLSsneggGQVIKVKKVIVHPNYNP 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 552 NakadegvkeFYDYDVALIQLMEDVQISPSVRPICIPCTQETsnalgLVGNSTC------KQQEEKLLATQLeklfflts 625
Cdd:cd00190  85 S---------TYDNDIALLKLKRPVTLSDNVRPICLPSSGYN-----LPAGTTCtvsgwgRTSEGGPLPDVL-------- 142
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 626 kgsitqkKEAHAKLGDNrDECIRYaldaegiktTNPKIPVTDNFICTGGqtPFRDHIACTGDSGGAVFKNYEHRTVQVAL 705
Cdd:cd00190 143 -------QEVNVPIVSN-AECKRA---------YSYGGTITDNMLCAGG--LEGGKDACQGDSGGPLVCNDNGRGVLVGI 203

                ....
gi 21616104 706 VSWG 709
Cdd:cd00190 204 VSWG 207
Tryp_SPc smart00020
Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens ...
478-710 4.25e-35

Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.


Pssm-ID: 214473  Cd Length: 229  Bit Score: 133.19  E-value: 4.25e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104    478 DSTRNMFPWKAAITVQvNVSAYCLGSLVSPQFILTAAHCFTFGDESEH-VTVEIDD----GNGKYKKVKTFKLHPNYNin 552
Cdd:smart00020   7 EANIGSFPWQVSLQYG-GGRHFCGGSLISPRWVLTAAHCVRGSDPSNIrVRLGSHDlssgEEGQVIKVSKVIIHPNYN-- 83
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104    553 akadegvKEFYDYDVALIQLMEDVQISPSVRPICIPCTQETsnalgLVGNSTC------KQQEEKL-LATQLeklfflts 625
Cdd:smart00020  84 -------PSTYDNDIALLKLKEPVTLSDNVRPICLPSSNYN-----VPAGTTCtvsgwgRTSEGAGsLPDTL-------- 143
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104    626 kgsitqkKEAHAKLGDNrDECIRYAldaegikttNPKIPVTDNFICTGGQTPFRDhiACTGDSGGAVFKNYeHRTVQVAL 705
Cdd:smart00020 144 -------QEVNVPIVSN-ATCRRAY---------SGGGAITDNMLCAGGLEGGKD--ACQGDSGGPLVCND-GRWVLVGI 203

                   ....*
gi 21616104    706 VSWGT 710
Cdd:smart00020 204 VSWGS 208
Trypsin pfam00089
Trypsin;
478-709 2.68e-25

Trypsin;


Pssm-ID: 459667 [Multi-domain]  Cd Length: 219  Bit Score: 104.45  E-value: 2.68e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104   478 DSTRNMFPWKAAITVQvNVSAYCLGSLVSPQFILTAAHCFTFGDE-----SEHvTVEIDDGNGKYKKVKTFKLHPNYNIN 552
Cdd:pfam00089   6 EAQPGSFPWQVSLQLS-SGKHFCGGSLISENWVLTAAHCVSGASDvkvvlGAH-NIVLREGGEQKFDVEKIIVHPNYNPD 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104   553 AkadegvkefYDYDVALIQLMEDVQISPSVRPICIPCTQETSNAlglvgNSTCkqqeeklLATQLEKLFFLtskGSITQK 632
Cdd:pfam00089  84 T---------LDNDIALLKLESPVTLGDTVRPICLPDASSDLPV-----GTTC-------TVSGWGNTKTL---GPSDTL 139
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 21616104   633 KEAHAKLGDnRDECIRYAldaegikttnpKIPVTDNFICTGGQtpFRDhiACTGDSGGAVFknYEHRTVQvALVSWG 709
Cdd:pfam00089 140 QEVTVPVVS-RETCRSAY-----------GGTVTDTMICAGAG--GKD--ACQGDSGGPLV--CSDGELI-GIVSWG 197
COG5640 COG5640
Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, ...
484-717 9.11e-22

Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444365 [Multi-domain]  Cd Length: 262  Bit Score: 95.49  E-value: 9.11e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 484 FPWKAAITVQV-NVSAYCLGSLVSPQFILTAAHCFTfGDESEHVTVEI-----DDGNGKYKKVKTFKLHPNYNINAkade 557
Cdd:COG5640  42 YPWMVALQSSNgPSGQFCGGTLIAPRWVLTAAHCVD-GDGPSDLRVVIgstdlSTSGGTVVKVARIVVHPDYDPAT---- 116
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 558 gvkefYDYDVALIQLMEDVqisPSVRPICIPctqeTSNALGLVGN--------STCkqqeekllatqleklfflTSKGSI 629
Cdd:COG5640 117 -----PGNDIALLKLATPV---PGVAPAPLA----TSADAAAPGTpatvagwgRTS------------------EGPGSQ 166
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 630 -TQKKEAHAKLGDNrDECIRYALdaegikttnpkiPVTDNFICTGGQTPFRDhiACTGDSGGAVFKNYEHRTVQVALVSW 708
Cdd:COG5640 167 sGTLRKADVPVVSD-ATCAAYGG------------FDGGTMLCAGYPEGGKD--ACQGDSGGPLVVKDGGGWVLVGVVSW 231

                ....*....
gi 21616104 709 GTkSLCKSG 717
Cdd:COG5640 232 GG-GPCAAG 239
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
255-450 4.62e-19

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 85.20  E-value: 4.62e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104    255 NIYIAVDISESIQKDHVESAKKAILKLITKISSFSVSPNYELLFFSSELSEVVNILDFfeNQPVDIKGRLTKFKVNAeHT 334
Cdd:smart00327   1 DVVFLLDGSGSMGGNRFELAKEFVLKLVEQLDIGPDGDRVGLVTFSDDARVLFPLNDS--RSKDALLEALASLSYKL-GG 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104    335 GTDLNLAFKTILERMALIKQRvgekAFEEHRHAIIVFTDGVYNMGGSPLPTVAKikhmvymnkideetgqNPRDEYLDIY 414
Cdd:smart00327  78 GTNLGAALQYALENLFSKSAG----SRRGAPKVVILITDGESNDGPKDLLKAAK----------------ELKRSGVKVF 137
                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 21616104    415 IFGIGAEIYDSDLRPLTAGTGGEHFFKLLEIQNLQE 450
Cdd:smart00327 138 VVGVGNDVDEEELKKLASAPGGVYVFLPELLDLLID 173
VWA pfam00092
von Willebrand factor type A domain;
255-454 3.48e-16

von Willebrand factor type A domain;


Pssm-ID: 459670 [Multi-domain]  Cd Length: 174  Bit Score: 76.93  E-value: 3.48e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104   255 NIYIAVDISESIQKDHVESAKKAILKLITKISSFSVSPNYELLFFSSELSEVVNILDFFENQpvDIKGRLTKFKVnAEHT 334
Cdd:pfam00092   1 DIVFLLDGSGSIGGDNFEKVKEFLKKLVESLDIGPDGTRVGLVQYSSDVRTEFPLNDYSSKE--ELLSAVDNLRY-LGGG 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104   335 GTDLNLAFKTILERmaLIKQRVGEKafEEHRHAIIVFTDGVYNMgGSPLPTVAKIKhmvymnkideetgqnprDEYLDIY 414
Cdd:pfam00092  78 TTNTGKALKYALEN--LFSSAAGAR--PGAPKVVVLLTDGRSQD-GDPEEVARELK-----------------SAGVTVF 135
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 21616104   415 IFGIGaEIYDSDLRPLTAGTGGEHFFKLLEIQNLQETFDN 454
Cdd:pfam00092 136 AVGVG-NADDEELRKIASEPGEGHVFTVSDFEALEDLQDQ 174
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
91-146 8.38e-16

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 72.11  E-value: 8.38e-16
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 21616104  91 CPDPNVLISGNVSPPQEKYYVDNETTYECDSGYTLRGSSRRICLPNGKWSGSTPIC 146
Cdd:cd00033   1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
91-146 2.62e-15

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 70.63  E-value: 2.62e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 21616104     91 CPDPNVLISGNVSPPQEKYYVDNETTYECDSGYTLRGSSRRICLPNGKWSGSTPIC 146
Cdd:smart00032   1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
91-146 1.17e-13

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 65.98  E-value: 1.17e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 21616104    91 CPDPNVLISGNVSPPQEKYYVDNETTYECDSGYTLRGSSRRICLPNGKWSGSTPIC 146
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
PHA02927 PHA02927
secreted complement-binding protein; Provisional
45-207 2.82e-11

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 64.67  E-value: 2.82e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104   45 GSMLIYYCPEGYYPYPYLTRVCQPNGTwkSARVSRRALPQrCRLVECPDPNVLISGNVSPPQEKYYVDNETTYECDSGYT 124
Cdd:PHA02927 105 GSSITYSCNSGYQLIGESKSYCELGST--GSMVWNPEAPI-CESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYS 181
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104  125 LRGSSRRIClPNGKWSgSTPICSRDTgdhCADPGIPAGAMRSG--NIFGIDDKVKYSCIDKLFLMGSSERKCLESGQWTG 202
Cdd:PHA02927 182 LIGNSGVLC-SGGEWS-DPPTCQIVK---CPHPTISNGYLSSGfkRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQP 256

                 ....*
gi 21616104  203 NEPAC 207
Cdd:PHA02927 257 ELPKC 261
ChlD COG1240
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
254-455 8.36e-09

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 57.26  E-value: 8.36e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 254 LNIYIAVDISESIQ-KDHVESAKKAILKLITKISSFSvspNYELLFFSSELSEVVNildfFENQPVDIKGRLTKFKVNae 332
Cdd:COG1240  93 RDVVLVVDASGSMAaENRLEAAKGALLDFLDDYRPRD---RVGLVAFGGEAEVLLP----LTRDREALKRALDELPPG-- 163
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 333 hTGTDLNLAFKTILERMalikqrvgEKAFEEHRHAIIVFTDGVYNMGGSPLPTVAKIkhmvymnkideetgqnPRDEYLD 412
Cdd:COG1240 164 -GGTPLGDALALALELL--------KRADPARRKVIVLLTDGRDNAGRIDPLEAAEL----------------AAAAGIR 218
                       170       180       190       200
                ....*....|....*....|....*....|....*....|....
gi 21616104 413 IYIFGIGAEIYDSD-LRPLTAGTGGEhFFKLLEIQNLQETFDNI 455
Cdd:COG1240 219 IYTIGVGTEAVDEGlLREIAEATGGR-YFRADDLSELAAIYREI 261
PHA02927 PHA02927
secreted complement-binding protein; Provisional
45-148 1.51e-08

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 56.58  E-value: 1.51e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104   45 GSMLIYYCPEGYYPYPYLTRVCQpNGTWKSarvsrralPQRCRLVECPDPNVLiSGNVSPPQEKYYVDNETT-YECDSGY 123
Cdd:PHA02927 169 GSVVTYSCNSGYSLIGNSGVLCS-GGEWSD--------PPTCQIVKCPHPTIS-NGYLSSGFKRSYSYNDNVdFKCKYGY 238
                         90       100
                 ....*....|....*....|....*
gi 21616104  124 TLRGSSRRICLPNGKWSGSTPICSR 148
Cdd:PHA02927 239 KLSGSSSSTCSPGNTWQPELPKCVR 263
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
154-207 4.11e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 50.15  E-value: 4.11e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 21616104 154 CADPGIPAGAMRSG--NIFGIDDKVKYSCIDKLFLMGSSERKCLESGQWTGNEPAC 207
Cdd:cd00033   1 CPPPPVPENGTVTGskGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTC 56
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
154-207 1.87e-07

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 48.29  E-value: 1.87e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 21616104    154 CADPG-IPAGAMRSGN-IFGIDDKVKYSCIDKLFLMGSSERKCLESGQWTGNEPAC 207
Cdd:smart00032   1 CPPPPdIENGTVTSSSgTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
154-207 6.90e-05

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 40.95  E-value: 6.90e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 21616104   154 CADPGIPAGAMRSG--NIFGIDDKVKYSCIDKLFLMGSSERKCLESGQWTGNEPAC 207
Cdd:pfam00084   1 CPPPPDIPNGKVSAtkNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
 
Name Accession Description Interval E-value
vWA_complement_factors cd01470
Complement factors B and C2 are two critical proteases for complement activation. They both ...
254-453 1.52e-97

Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.


Pssm-ID: 238747 [Multi-domain]  Cd Length: 198  Bit Score: 300.36  E-value: 1.52e-97
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 254 LNIYIAVDISESIQKDHVESAKKAILKLITKISSFSVSPNYELLFFSSELSEVVNILDFFENQPVDIKGRLTKFKVNAEH 333
Cdd:cd01470   1 LNIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIRDFNSNDADDVIKRLEDFNYDDHG 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 334 --TGTDLNLAFKTILERMALIKQRvGEKAFEEHRHAIIVFTDGVYNMGGSPLPTVAKIKHMVYMNKIDEetgqNPRDEYL 411
Cdd:cd01470  81 dkTGTNTAAALKKVYERMALEKVR-NKEAFNETRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSD----NPREDYL 155
                       170       180       190       200
                ....*....|....*....|....*....|....*....|...
gi 21616104 412 DIYIFGIGAEIYDSDLRPLTAGTGGE-HFFKLLEIQNLQETFD 453
Cdd:cd01470 156 DVYVFGVGDDVNKEELNDLASKKDNErHFFKLKDYEDLQEVFD 198
Tryp_SPc cd00190
Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens ...
478-709 8.45e-39

Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.


Pssm-ID: 238113 [Multi-domain]  Cd Length: 232  Bit Score: 143.57  E-value: 8.45e-39
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 478 DSTRNMFPWKAAITVQVNvSAYCLGSLVSPQFILTAAHCFT-FGDESEHVTVEIDDGN-----GKYKKVKTFKLHPNYNI 551
Cdd:cd00190   6 EAKIGSFPWQVSLQYTGG-RHFCGGSLISPRWVLTAAHCVYsSAPSNYTVRLGSHDLSsneggGQVIKVKKVIVHPNYNP 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 552 NakadegvkeFYDYDVALIQLMEDVQISPSVRPICIPCTQETsnalgLVGNSTC------KQQEEKLLATQLeklfflts 625
Cdd:cd00190  85 S---------TYDNDIALLKLKRPVTLSDNVRPICLPSSGYN-----LPAGTTCtvsgwgRTSEGGPLPDVL-------- 142
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 626 kgsitqkKEAHAKLGDNrDECIRYaldaegiktTNPKIPVTDNFICTGGqtPFRDHIACTGDSGGAVFKNYEHRTVQVAL 705
Cdd:cd00190 143 -------QEVNVPIVSN-AECKRA---------YSYGGTITDNMLCAGG--LEGGKDACQGDSGGPLVCNDNGRGVLVGI 203

                ....
gi 21616104 706 VSWG 709
Cdd:cd00190 204 VSWG 207
Tryp_SPc smart00020
Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens ...
478-710 4.25e-35

Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.


Pssm-ID: 214473  Cd Length: 229  Bit Score: 133.19  E-value: 4.25e-35
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104    478 DSTRNMFPWKAAITVQvNVSAYCLGSLVSPQFILTAAHCFTFGDESEH-VTVEIDD----GNGKYKKVKTFKLHPNYNin 552
Cdd:smart00020   7 EANIGSFPWQVSLQYG-GGRHFCGGSLISPRWVLTAAHCVRGSDPSNIrVRLGSHDlssgEEGQVIKVSKVIIHPNYN-- 83
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104    553 akadegvKEFYDYDVALIQLMEDVQISPSVRPICIPCTQETsnalgLVGNSTC------KQQEEKL-LATQLeklfflts 625
Cdd:smart00020  84 -------PSTYDNDIALLKLKEPVTLSDNVRPICLPSSNYN-----VPAGTTCtvsgwgRTSEGAGsLPDTL-------- 143
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104    626 kgsitqkKEAHAKLGDNrDECIRYAldaegikttNPKIPVTDNFICTGGQTPFRDhiACTGDSGGAVFKNYeHRTVQVAL 705
Cdd:smart00020 144 -------QEVNVPIVSN-ATCRRAY---------SGGGAITDNMLCAGGLEGGKD--ACQGDSGGPLVCND-GRWVLVGI 203

                   ....*
gi 21616104    706 VSWGT 710
Cdd:smart00020 204 VSWGS 208
vWFA_subfamily_ECM cd01450
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
254-440 5.45e-26

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains


Pssm-ID: 238727 [Multi-domain]  Cd Length: 161  Bit Score: 104.68  E-value: 5.45e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 254 LNIYIAVDISESIQKDHVESAKKAILKLITKISSFSVSPNYELLFFSSELSEVVNILDFFENQpvDIKGRLTKFKVNAeH 333
Cdd:cd01450   1 LDIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYKSKD--DLLKAVKNLKYLG-G 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 334 TGTDLNLAFKTILERMALIKQRvgekaFEEHRHAIIVFTDGVYNMGGSPLPTVAKIkhmvymnkideetgqnpRDEYLDI 413
Cdd:cd01450  78 GGTNTGKALQYALEQLFSESNA-----RENVPKVIIVLTDGRSDDGGDPKEAAAKL-----------------KDEGIKV 135
                       170       180
                ....*....|....*....|....*..
gi 21616104 414 YIFGIGAeIYDSDLRPLTAGTGGEHFF 440
Cdd:cd01450 136 FVVGVGP-ADEEELREIASCPSERHVF 161
Trypsin pfam00089
Trypsin;
478-709 2.68e-25

Trypsin;


Pssm-ID: 459667 [Multi-domain]  Cd Length: 219  Bit Score: 104.45  E-value: 2.68e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104   478 DSTRNMFPWKAAITVQvNVSAYCLGSLVSPQFILTAAHCFTFGDE-----SEHvTVEIDDGNGKYKKVKTFKLHPNYNIN 552
Cdd:pfam00089   6 EAQPGSFPWQVSLQLS-SGKHFCGGSLISENWVLTAAHCVSGASDvkvvlGAH-NIVLREGGEQKFDVEKIIVHPNYNPD 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104   553 AkadegvkefYDYDVALIQLMEDVQISPSVRPICIPCTQETSNAlglvgNSTCkqqeeklLATQLEKLFFLtskGSITQK 632
Cdd:pfam00089  84 T---------LDNDIALLKLESPVTLGDTVRPICLPDASSDLPV-----GTTC-------TVSGWGNTKTL---GPSDTL 139
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 21616104   633 KEAHAKLGDnRDECIRYAldaegikttnpKIPVTDNFICTGGQtpFRDhiACTGDSGGAVFknYEHRTVQvALVSWG 709
Cdd:pfam00089 140 QEVTVPVVS-RETCRSAY-----------GGTVTDTMICAGAG--GKD--ACQGDSGGPLV--CSDGELI-GIVSWG 197
COG5640 COG5640
Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, ...
484-717 9.11e-22

Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444365 [Multi-domain]  Cd Length: 262  Bit Score: 95.49  E-value: 9.11e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 484 FPWKAAITVQV-NVSAYCLGSLVSPQFILTAAHCFTfGDESEHVTVEI-----DDGNGKYKKVKTFKLHPNYNINAkade 557
Cdd:COG5640  42 YPWMVALQSSNgPSGQFCGGTLIAPRWVLTAAHCVD-GDGPSDLRVVIgstdlSTSGGTVVKVARIVVHPDYDPAT---- 116
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 558 gvkefYDYDVALIQLMEDVqisPSVRPICIPctqeTSNALGLVGN--------STCkqqeekllatqleklfflTSKGSI 629
Cdd:COG5640 117 -----PGNDIALLKLATPV---PGVAPAPLA----TSADAAAPGTpatvagwgRTS------------------EGPGSQ 166
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 630 -TQKKEAHAKLGDNrDECIRYALdaegikttnpkiPVTDNFICTGGQTPFRDhiACTGDSGGAVFKNYEHRTVQVALVSW 708
Cdd:COG5640 167 sGTLRKADVPVVSD-ATCAAYGG------------FDGGTMLCAGYPEGGKD--ACQGDSGGPLVVKDGGGWVLVGVVSW 231

                ....*....
gi 21616104 709 GTkSLCKSG 717
Cdd:COG5640 232 GG-GPCAAG 239
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
255-450 4.62e-19

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 85.20  E-value: 4.62e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104    255 NIYIAVDISESIQKDHVESAKKAILKLITKISSFSVSPNYELLFFSSELSEVVNILDFfeNQPVDIKGRLTKFKVNAeHT 334
Cdd:smart00327   1 DVVFLLDGSGSMGGNRFELAKEFVLKLVEQLDIGPDGDRVGLVTFSDDARVLFPLNDS--RSKDALLEALASLSYKL-GG 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104    335 GTDLNLAFKTILERMALIKQRvgekAFEEHRHAIIVFTDGVYNMGGSPLPTVAKikhmvymnkideetgqNPRDEYLDIY 414
Cdd:smart00327  78 GTNLGAALQYALENLFSKSAG----SRRGAPKVVILITDGESNDGPKDLLKAAK----------------ELKRSGVKVF 137
                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 21616104    415 IFGIGAEIYDSDLRPLTAGTGGEHFFKLLEIQNLQE 450
Cdd:smart00327 138 VVGVGNDVDEEELKKLASAPGGVYVFLPELLDLLID 173
VWA pfam00092
von Willebrand factor type A domain;
255-454 3.48e-16

von Willebrand factor type A domain;


Pssm-ID: 459670 [Multi-domain]  Cd Length: 174  Bit Score: 76.93  E-value: 3.48e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104   255 NIYIAVDISESIQKDHVESAKKAILKLITKISSFSVSPNYELLFFSSELSEVVNILDFFENQpvDIKGRLTKFKVnAEHT 334
Cdd:pfam00092   1 DIVFLLDGSGSIGGDNFEKVKEFLKKLVESLDIGPDGTRVGLVQYSSDVRTEFPLNDYSSKE--ELLSAVDNLRY-LGGG 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104   335 GTDLNLAFKTILERmaLIKQRVGEKafEEHRHAIIVFTDGVYNMgGSPLPTVAKIKhmvymnkideetgqnprDEYLDIY 414
Cdd:pfam00092  78 TTNTGKALKYALEN--LFSSAAGAR--PGAPKVVVLLTDGRSQD-GDPEEVARELK-----------------SAGVTVF 135
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 21616104   415 IFGIGaEIYDSDLRPLTAGTGGEHFFKLLEIQNLQETFDN 454
Cdd:pfam00092 136 AVGVG-NADDEELRKIASEPGEGHVFTVSDFEALEDLQDQ 174
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
91-146 8.38e-16

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 72.11  E-value: 8.38e-16
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 21616104  91 CPDPNVLISGNVSPPQEKYYVDNETTYECDSGYTLRGSSRRICLPNGKWSGSTPIC 146
Cdd:cd00033   1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTC 56
vWFA cd00198
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
254-440 1.65e-15

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.


Pssm-ID: 238119 [Multi-domain]  Cd Length: 161  Bit Score: 74.52  E-value: 1.65e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 254 LNIYIAVDISESIQKDHVESAKKAILKLITKISSFSVSPNYELLFFSSELSEVVNILDFFENQpvDIKGRLTKFKVNAEh 333
Cdd:cd00198   1 ADIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKA--DLLEAIDALKKGLG- 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 334 TGTDLNLAFKTILERMALIKQRVGEKafeehrhAIIVFTDGVYNMGGSPLPTVAkikhmvymnkideetgQNPRDEYLDI 413
Cdd:cd00198  78 GGTNIGAALRLALELLKSAKRPNARR-------VIILLTDGEPNDGPELLAEAA----------------RELRKLGITV 134
                       170       180
                ....*....|....*....|....*..
gi 21616104 414 YIFGIGAEIYDSDLRPLTAGTGGEHFF 440
Cdd:cd00198 135 YTIGIGDDANEDELKEIADKTTGGAVF 161
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
91-146 2.62e-15

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 70.63  E-value: 2.62e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 21616104     91 CPDPNVLISGNVSPPQEKYYVDNETTYECDSGYTLRGSSRRICLPNGKWSGSTPIC 146
Cdd:smart00032   1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
91-146 1.17e-13

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 65.98  E-value: 1.17e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 21616104    91 CPDPNVLISGNVSPPQEKYYVDNETTYECDSGYTLRGSSRRICLPNGKWSGSTPIC 146
Cdd:pfam00084   1 CPPPPDIPNGKVSATKNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
PHA02927 PHA02927
secreted complement-binding protein; Provisional
45-207 2.82e-11

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 64.67  E-value: 2.82e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104   45 GSMLIYYCPEGYYPYPYLTRVCQPNGTwkSARVSRRALPQrCRLVECPDPNVLISGNVSPPQEKYYVDNETTYECDSGYT 124
Cdd:PHA02927 105 GSSITYSCNSGYQLIGESKSYCELGST--GSMVWNPEAPI-CESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYS 181
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104  125 LRGSSRRIClPNGKWSgSTPICSRDTgdhCADPGIPAGAMRSG--NIFGIDDKVKYSCIDKLFLMGSSERKCLESGQWTG 202
Cdd:PHA02927 182 LIGNSGVLC-SGGEWS-DPPTCQIVK---CPHPTISNGYLSSGfkRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQP 256

                 ....*
gi 21616104  203 NEPAC 207
Cdd:PHA02927 257 ELPKC 261
ChlD COG1240
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
254-455 8.36e-09

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 57.26  E-value: 8.36e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 254 LNIYIAVDISESIQ-KDHVESAKKAILKLITKISSFSvspNYELLFFSSELSEVVNildfFENQPVDIKGRLTKFKVNae 332
Cdd:COG1240  93 RDVVLVVDASGSMAaENRLEAAKGALLDFLDDYRPRD---RVGLVAFGGEAEVLLP----LTRDREALKRALDELPPG-- 163
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 333 hTGTDLNLAFKTILERMalikqrvgEKAFEEHRHAIIVFTDGVYNMGGSPLPTVAKIkhmvymnkideetgqnPRDEYLD 412
Cdd:COG1240 164 -GGTPLGDALALALELL--------KRADPARRKVIVLLTDGRDNAGRIDPLEAAEL----------------AAAAGIR 218
                       170       180       190       200
                ....*....|....*....|....*....|....*....|....
gi 21616104 413 IYIFGIGAEIYDSD-LRPLTAGTGGEhFFKLLEIQNLQETFDNI 455
Cdd:COG1240 219 IYTIGVGTEAVDEGlLREIAEATGGR-YFRADDLSELAAIYREI 261
PHA02927 PHA02927
secreted complement-binding protein; Provisional
45-148 1.51e-08

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 56.58  E-value: 1.51e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104   45 GSMLIYYCPEGYYPYPYLTRVCQpNGTWKSarvsrralPQRCRLVECPDPNVLiSGNVSPPQEKYYVDNETT-YECDSGY 123
Cdd:PHA02927 169 GSVVTYSCNSGYSLIGNSGVLCS-GGEWSD--------PPTCQIVKCPHPTIS-NGYLSSGFKRSYSYNDNVdFKCKYGY 238
                         90       100
                 ....*....|....*....|....*
gi 21616104  124 TLRGSSRRICLPNGKWSGSTPICSR 148
Cdd:PHA02927 239 KLSGSSSSTCSPGNTWQPELPKCVR 263
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
154-207 4.11e-08

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 50.15  E-value: 4.11e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 21616104 154 CADPGIPAGAMRSG--NIFGIDDKVKYSCIDKLFLMGSSERKCLESGQWTGNEPAC 207
Cdd:cd00033   1 CPPPPVPENGTVTGskGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTC 56
PHA02639 PHA02639
EEV host range protein; Provisional
24-207 1.01e-07

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 54.28  E-value: 1.01e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104   24 CPEQDVAIVGGHYKLTRDLQPGSMLIYYCPEGYYPYPYLTRVC---QPNGTWksarvSRRAlpQRCRLVECPDPNVLISG 100
Cdd:PHA02639  22 CDKPDDISNGFITELMEKYEIGKLIEYTCNTDYALIGDRFRTCikdKNNAIW-----SNKA--PFCMLKECNDPPSIING 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104  101 NVSPPQEKYYVDNETTYECDS----GYTLRGSSRRICLPNGKWSGSTPICSRdtgDHCADPGIPAG---AMRSGNIFGID 173
Cdd:PHA02639  95 KIYNKREMYKVGDEIYYVCNEhkgvQYSLVGNEKITCIQDKSWKPDPPICKM---INCRFPALQNGyinGIPSNKKFYYK 171
                        170       180       190
                 ....*....|....*....|....*....|....
gi 21616104  174 DKVKYSCIDKLFLMGSSERKCLESGQWTGNEPAC 207
Cdd:PHA02639 172 TRVGFSCKSGFDLVGEKYSTCNINATWFPSIPTC 205
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
154-207 1.87e-07

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 48.29  E-value: 1.87e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 21616104    154 CADPG-IPAGAMRSGN-IFGIDDKVKYSCIDKLFLMGSSERKCLESGQWTGNEPAC 207
Cdd:smart00032   1 CPPPPdIENGTVTSSSgTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
PHA02817 PHA02817
EEV Host range protein; Provisional
45-148 5.45e-07

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 51.09  E-value: 5.45e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104   45 GSMLIYYCPEGYYPYPYL-----TRVCQPNGTWKSArvsrralPQRCRLVECPDPnVLISGNVS--PPQEKYYVDNETTY 117
Cdd:PHA02817  45 GSNVTFFCGNNTRGVRYTlvgekNIICEKDGKWNKE-------FPVCKIIRCRFP-ALQNGFVNgiPDSKKFYYESEVSF 116
                         90       100       110
                 ....*....|....*....|....*....|.
gi 21616104  118 ECDSGYTLRGSSRRICLPNGKWSGSTPICSR 148
Cdd:PHA02817 117 SCKPGFVLIGTKYSVCGINSSWIPKVPICSR 147
PHA02831 PHA02831
EEV host range protein; Provisional
69-207 6.19e-07

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 51.53  E-value: 6.19e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104   69 NGTW--KSARVSRRalpqrcrlvECPDPNVLISGNVSPPQEKYYVDNETTYECD----SGYTLRGSSRRICLpNGKWSGS 142
Cdd:PHA02831  63 NGSWstKNMCIGKR---------NCKDPVTILNGYIKNKKDQYSFGDSVTYACKvnklEKYSIVGNETVKCI-NKQWVPK 132
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 21616104  143 TPICSRdtgDHCADPGIPAGAMRS-GNIFGIDDKVKYSCIDKLFLMGSSERKCLESGQWTGNEPAC 207
Cdd:PHA02831 133 YPVCKL---IRCKYPALQNGFLNVfEKKFYYGDIVNFKCKKGFILLGSSVSTCDINSIWYPGIPKC 195
eMpr COG3591
V8-like Glu-specific endopeptidase [Posttranslational modification, protein turnover, ...
495-585 3.42e-06

V8-like Glu-specific endopeptidase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442810 [Multi-domain]  Cd Length: 194  Bit Score: 48.52  E-value: 3.42e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104 495 NVSAYCLGSLVSPQFILTAAHC-FTFGDESEHVTVEI----DDGNGKYKKVKTFKLHPNYNINAKAdegvkefyDYDVAL 569
Cdd:COG3591   9 GGGGVCTGTLIGPNLVLTAGHCvYDGAGGGWATNIVFvpgyNGGPYGTATATRFRVPPGWVASGDA--------GYDYAL 80
                        90
                ....*....|....*.
gi 21616104 570 IQLmeDVQISPSVRPI 585
Cdd:COG3591  81 LRL--DEPLGDTTGWL 94
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
89-218 4.59e-06

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 49.31  E-value: 4.59e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104   89 VECPD----PNVLISGNVSPPQEKYYVDNETTYECDSGYTLRGSSRRICLPNgKWSgSTPICSRdtgdHCADPGIPAGAM 164
Cdd:PHA02954 123 VTCPNaecqPLQLEHGSCQPVKEKYSFGEHITINCDVGYEVIGASYISCTAN-SWN-VIPSCQQ----KCDIPSLSNGLI 196
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 21616104  165 rSGNIFGIDDKVKYSCIDKLFLMGSSERKCLEsGQWTGNEPACYFKHTYDTPLE 218
Cdd:PHA02954 197 -SGSTFSIGGVIHLSCKSGFTLTGSPSSTCID-GKWNPVLPICVRSNEEFDPVD 248
PHA02817 PHA02817
EEV Host range protein; Provisional
86-207 4.83e-05

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 45.32  E-value: 4.83e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104   86 CRLVECPDPNVLISGNVSPPQEKYYVDNETTYECDSG-----YTLRGSSRRICLPNGKWSGSTPICSRDTgdhCADPgip 160
Cdd:PHA02817  19 CDLNKCCYPPSIKNGYIYNKKTEYNIGSNVTFFCGNNtrgvrYTLVGEKNIICEKDGKWNKEFPVCKIIR---CRFP--- 92
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 21616104  161 agAMRSGNIFGIDD--------KVKYSCIDKLFLMGSSERKCLESGQWTGNEPAC 207
Cdd:PHA02817  93 --ALQNGFVNGIPDskkfyyesEVSFSCKPGFVLIGTKYSVCGINSSWIPKVPIC 145
Sushi pfam00084
Sushi repeat (SCR repeat);
154-207 6.90e-05

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 40.95  E-value: 6.90e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 21616104   154 CADPGIPAGAMRSG--NIFGIDDKVKYSCIDKLFLMGSSERKCLESGQWTGNEPAC 207
Cdd:pfam00084   1 CPPPPDIPNGKVSAtkNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
PHA02639 PHA02639
EEV host range protein; Provisional
66-149 5.62e-04

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 42.73  E-value: 5.62e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21616104   66 CQPNGTWKSArvsrralPQRCRLVECPDPnVLISGNVS--PPQEKYYVDNETTYECDSGYTLRGSSRRICLPNGKWSGST 143
Cdd:PHA02639 131 CIQDKSWKPD-------PPICKMINCRFP-ALQNGYINgiPSNKKFYYKTRVGFSCKSGFDLVGEKYSTCNINATWFPSI 202

                 ....*.
gi 21616104  144 PICSRD 149
Cdd:PHA02639 203 PTCVRN 208
Sushi pfam00084
Sushi repeat (SCR repeat);
43-75 7.25e-04

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 38.25  E-value: 7.25e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 21616104    43 QPGSMLIYYCPEGYYPYPYLTRVCQPNGTWKSA 75
Cdd:pfam00084  20 NYGASVSYECDPGYRLVGSPTITCQEDGTWSPP 52
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
45-72 2.82e-03

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 36.74  E-value: 2.82e-03
                           10        20
                   ....*....|....*....|....*...
gi 21616104     45 GSMLIYYCPEGYYPYPYLTRVCQPNGTW 72
Cdd:smart00032  22 GDTVTYSCDPGYTLIGSSTITCLENGTW 49
PHA02831 PHA02831
EEV host range protein; Provisional
86-150 3.23e-03

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 39.98  E-value: 3.23e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 21616104   86 CRLVECPDPnVLISGNVSPPQEKYYVDNETTYECDSGYTLRGSSRRICLPNGKWSGSTPICSRDT 150
Cdd:PHA02831 136 CKLIRCKYP-ALQNGFLNVFEKKFYYGDIVNFKCKKGFILLGSSVSTCDINSIWYPGIPKCVKDK 199
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
24-72 3.99e-03

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 36.29  E-value: 3.99e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 21616104  24 CPEQDVaIVGGHYKLTRD-LQPGSMLIYYCPEGYYPYPYLTRVCQPNGTW 72
Cdd:cd00033   1 CPPPPV-PENGTVTGSKGsYSYGSTVTYSCNEGYTLVGSSTITCTENGGW 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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