|
Name |
Accession |
Description |
Interval |
E-value |
| Uds1 |
pfam15456 |
Up-regulated During Septation; Uds1 is a domain family is found mostly in fungi, and is ... |
516-677 |
7.09e-24 |
|
Up-regulated During Septation; Uds1 is a domain family is found mostly in fungi, and is typically between 120 and 138 amino acids in length. The GO annotation for the S.pombe protein describes the protein as barrier septum assembly involved in cell cycle cytokinesis, GO:0071937. Many of the uncharacterized members are listed as being involucrin repeat proteins, but this can not be substantiated.
Pssm-ID: 434730 [Multi-domain] Cd Length: 119 Bit Score: 98.39 E-value: 7.09e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 516 LLLDQARVDSQEYGTMSLEQVAEAKRDLEHIERKVQTLRTKLKVEIKIRDAAVALRRAHRRTAASahsptssvsvvvspt 595
Cdd:pfam15456 1 LLVETALLDSQEFEILSFEEVEELKKELRALDSRLEYLRRKLALETKLRDAARSLHRLYSSYLRS--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 596 spglvplhrhsndkfssssastssfavrSRALSISASEAKSDEDVSIATAKVDKVANELIKWTERANSIRRRLLEHQAAT 675
Cdd:pfam15456 66 ----------------------------PRNSKFSESLLKAEEELAESDRKIDELAQELEKLENRRAEVRRRLLEHTAAV 117
|
..
gi 388856237 676 LS 677
Cdd:pfam15456 118 LQ 119
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
768-1261 |
1.19e-22 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 106.17 E-value: 1.19e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 768 EKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMNRFEESACQAQARA 847
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 848 VQAAIADVEQrmQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQTSEEHKRNAK 927
Cdd:COG1196 368 LEAEAELAEA--EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 928 DVQGETARQLTQGSQDLASLRTELESSTAAKVAATTLASDRAKAIAELEVLLKQVCSELGAEKQARMKAEEQVAATQEQV 1007
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1008 LDSRSRADQADDKLRELELAVSAERRMMAERDELFHAFERRLESAEQR---LQVQDKRCARMLGKLEGREEMDDLLERIK 1084
Cdd:COG1196 526 VAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRatfLPLDKIRARAALAAALARGAIGAAVDLVA 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1085 AGAAGVAKKKTAGQDIAgLLSSLETHIGDLELELARANAQlpDTPRDSVARSDVSATPTVYHAELEASKQEVQRWKAEAE 1164
Cdd:COG1196 606 SDLREADARYYVLGDTL-LGRTLVAARLEAALRRAVTLAG--RLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELE 682
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1165 RLEASLKSQTMKEEEAKVSTDEHRRLHALEVEMRALSEKNEAskrQAEEQRSQLEAEVQSLAQQNKDLEQQGLQRVKQLE 1244
Cdd:COG1196 683 ELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE---ALEEQLEAEREELLEELLEEEELLEEEALEELPEP 759
|
490
....*....|....*..
gi 388856237 1245 TKIGELESQNRELEKQL 1261
Cdd:COG1196 760 PDLEELERELERLEREI 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
765-1489 |
8.62e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 97.05 E-value: 8.62e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 765 SAPEKLRRLGEEV-------ERKREMVRKLES---DLTSARDAAKRREESSNRLTQQLE--EQYRERSRAVEEL------ 826
Cdd:TIGR02168 152 AKPEERRAIFEEAagiskykERRKETERKLERtreNLDRLEDILNELERQLKSLERQAEkaERYKELKAELRELelallv 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 827 ---RTLREQMNRFEESACQAQARAVQAAIAdvEQRMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQD 903
Cdd:TIGR02168 232 lrlEELREELEELQEELKEAEEELEELTAE--LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 904 EAKTLQLRAEAAEQTSEEHKRNAKDVQGETAR---QLTQGSQDLASLRTELESSTAAKVAA-----------TTLASDRA 969
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAEleeKLEELKEELESLEAELEELEAELEELesrleeleeqlETLRSKVA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 970 KAIAELEVLLKQVcSELGAEKQARMKAEEQVAATQEQVLDSRSRADqaddkLRELELAVSAERRMMAERDELFHAFERRL 1049
Cdd:TIGR02168 390 QLELQIASLNNEI-ERLEARLERLEDRRERLQQEIEELLKKLEEAE-----LKELQAELEELEEELEELQEELERLEEAL 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1050 ES-------AEQRLQVQDKRCARMLGKLEGREEMDDLLERIKAGAAGVAKKKTAGQDIAGLLSSLETHIGDLELELA--- 1119
Cdd:TIGR02168 464 EElreeleeAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEaal 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1120 RANAQLPDTPRDSVARSDVSA--------------------TPTVYHAELEASKQEVQRWKAEAERLEASLK-------- 1171
Cdd:TIGR02168 544 GGRLQAVVVENLNAAKKAIAFlkqnelgrvtflpldsikgtEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyllg 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1172 --------------SQTMKEEEAKVSTD------------EHRRLHALEVEMRALSEKNEASKRQAEEQRSQLEAEVQSL 1225
Cdd:TIGR02168 624 gvlvvddldnalelAKKLRPGYRIVTLDgdlvrpggvitgGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAEL 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1226 AQQNKDLEQQGLQRVKQLETKIGELESQNRELEKQLSNVSNHASNPASPATSPDTLPVRAVNTTSPRSATFPLpnkgvgn 1305
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE------- 776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1306 lidrfgggRKVSSEFRAEDSPAMTQAwMHSIENLRAMLPDLSAAakgsadLNALRDAFQTCSTVSPSLTAVKSPSSARIp 1385
Cdd:TIGR02168 777 --------LAEAEAEIEELEAQIEQL-KEELKALREALDELRAE------LTLLNEEAANLRERLESLERRIAATERRL- 840
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1386 lgaADLQAELEATAERI-RSTLAISRTVIDLA-LVSEVDKEnraqpqsGDKKEATVQAQADALSSQQALLTRITSLTAKV 1463
Cdd:TIGR02168 841 ---EDLEEQIEELSEDIeSLAAEIEELEELIEeLESELEAL-------LNERASLEEALALLRSELEELSEELRELESKR 910
|
810 820
....*....|....*....|....*.
gi 388856237 1464 KEQADREKHLKVELAEVRGELEEARA 1489
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEV 936
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
769-1057 |
3.69e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 91.66 E-value: 3.69e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 769 KLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMNRFEEsaCQAQARAV 848
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE--RIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 849 QAAIADVEQRMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQTSEEHKRNAKD 928
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 929 VQ---GETARQLTQGSQDLASLRTELESSTAAkvaattlasdRAKAIAELEVLLKQvcselgaekqaRMKAEEQVAAtqe 1005
Cdd:TIGR02168 836 TErrlEDLEEQIEELSEDIESLAAEIEELEEL----------IEELESELEALLNE-----------RASLEEALAL--- 891
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 388856237 1006 qvldSRSRADQADDKLRELELAVSAERRMMAERDELFHAFERRLESAEQRLQ 1057
Cdd:TIGR02168 892 ----LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID 939
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
767-1251 |
2.46e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 85.37 E-value: 2.46e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 767 PEKLRRLGEEV-------ERKREMVRKLES---DLTSARDaakRREEssnrLTQQLEEQYRERSRAvEELRTLREQMNRF 836
Cdd:COG1196 154 PEERRAIIEEAagiskykERKEEAERKLEAteeNLERLED---ILGE----LERQLEPLERQAEKA-ERYRELKEELKEL 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 837 E-------------ESACQAQARAVQAAIADVEQRMQRQLEQERSRdqdkedalvnAKAEVMAGQRALSDLQARLAAAQD 903
Cdd:COG1196 226 EaellllklreleaELEELEAELEELEAELEELEAELAELEAELEE----------LRLELEELELELEEAQAEEYELLA 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 904 EaktlQLRAEAAEQTSEEHKRNAKDVQGETARQLTQGSQDLASLRTELESSTAAKVAATTLASDRAKAIAELEVLLKQVC 983
Cdd:COG1196 296 E----LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 984 SELGAEKQARMKAEEQVAATQEQVLDSRSRADQADDKLRELELAVSAERRMMAERDELFHAFERRLESAEQRLQVQDKRC 1063
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1064 ARMLGKLEG-REEMDDLLERIKAGAAGVAKKKTAGQDIAGLLSSLETHIGDLELELA--RANAQLPDTPRDSVARSDVSA 1140
Cdd:COG1196 452 AELEEEEEAlLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEgvKAALLLAGLRGLAGAVAVLIG 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1141 TPTVYHAELEAS-----KQEVQRWKAEAERLEASLKSQTMKEEEAKVSTDEHRRLHALEVEMRALSEK---NEASKRQAE 1212
Cdd:COG1196 532 VEAAYEAALEAAlaaalQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAavdLVASDLREA 611
|
490 500 510
....*....|....*....|....*....|....*....
gi 388856237 1213 EQRSQLEAEVQSLAQQNKDLEQQGLQRVKQLETKIGELE 1251
Cdd:COG1196 612 DARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVT 650
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
763-1260 |
2.62e-16 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 85.58 E-value: 2.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 763 DASAPEKLRRLgEEVERKREMVRKLESD---------------LTSARDAAKRREES--SNRLTQQLEEQYRERSRAVEE 825
Cdd:PTZ00121 1222 DAKKAEAVKKA-EEAKKDAEEAKKAEEErnneeirkfeearmaHFARRQAAIKAEEArkADELKKAEEKKKADEAKKAEE 1300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 826 LRTLREQMNRFEESACQAQARAVQAAIADVEQRMQRQLEQERSRDQDKEdalvnAKAEVMAGQralsdlqarLAAAQDEA 905
Cdd:PTZ00121 1301 KKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAK-----AEAEAAADE---------AEAAEEKA 1366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 906 KTLQLRAEAAEQTSEEHKRNAKDVQgeTARQLTQGSQDLASLRTELESSTAAKVAATTL--------ASDRAKAIAELEV 977
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEKK--KADEAKKKAEEDKKKADELKKAAAAKKKADEAkkkaeekkKADEAKKKAEEAK 1444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 978 L---LKQVCSELGAEKQARMKAEEQVAATQ-EQVLDSRSRADQADDKLREL-----ELAVSAERRMMAerDELFHAFERR 1048
Cdd:PTZ00121 1445 KadeAKKKAEEAKKAEEAKKKAEEAKKADEaKKKAEEAKKADEAKKKAEEAkkkadEAKKAAEAKKKA--DEAKKAEEAK 1522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1049 leSAEQRLQVQDKRCARMLGKLEGREEMDDL--LERIKAG--AAGVAKKKTAGQDIAGLLSSLETHigdLELELARANAQ 1124
Cdd:PTZ00121 1523 --KADEAKKAEEAKKADEAKKAEEKKKADELkkAEELKKAeeKKKAEEAKKAEEDKNMALRKAEEA---KKAEEARIEEV 1597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1125 LPDTPRDSVARSDvsatptvyhaelEASKQEVQRWKAEAERLEASLK---SQTMKEEEAKVSTDEHRRLHALEVEMRA-- 1199
Cdd:PTZ00121 1598 MKLYEEEKKMKAE------------EAKKAEEAKIKAEELKKAEEEKkkvEQLKKKEAEEKKKAEELKKAEEENKIKAae 1665
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 388856237 1200 LSEKNEASKRQAEEQRSQLEAEVQSLAQQNKDLEQQglQRVKQLETKIGELESQNRELEKQ 1260
Cdd:PTZ00121 1666 EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA--KKAEELKKKEAEEKKKAEELKKA 1724
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
763-1270 |
1.02e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 83.65 E-value: 1.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 763 DASAPEKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMNRFEEsacq 842
Cdd:PTZ00121 1313 EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE---- 1388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 843 aqaravqaaiadvEQRMQRQLEQERSRDQDKEDALVNAKAEvmagqRALSDLQARLAAAQDEAKTLQLRAEAAEQTSEEH 922
Cdd:PTZ00121 1389 -------------EKKKADEAKKKAEEDKKKADELKKAAAA-----KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAK 1450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 923 KRNAKDVQGETARQLTQGSQDLASLRTELESSTAAkvaattlasDRAKAIAELEvllKQVCSELGAEKQARMKAEEQVAA 1002
Cdd:PTZ00121 1451 KKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKA---------DEAKKKAEEA---KKKADEAKKAAEAKKKADEAKKA 1518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1003 TQEQVLDSRSRADQAD--DKLRELELAVSAERRMMAErdELFHAFERRlESAEQRLQVQDK----RCARMLGKLEGR--E 1074
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKkaDEAKKAEEKKKADELKKAE--ELKKAEEKK-KAEEAKKAEEDKnmalRKAEEAKKAEEAriE 1595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1075 EMDDLLERIKAGAAGVAKKKTAGQDIAGLLSSLEthigdlelELARANAQLPDTPRDSVARSD---VSATPTVYHAELEA 1151
Cdd:PTZ00121 1596 EVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE--------EEKKKVEQLKKKEAEEKKKAEelkKAEEENKIKAAEEA 1667
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1152 SKQEVQRWKAE----AERLEASLKSQTMKEEEAKVSTDEHRRLHALEV----EMRALSEKN-----------EASKRQAE 1212
Cdd:PTZ00121 1668 KKAEEDKKKAEeakkAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKkkaeELKKAEEENkikaeeakkeaEEDKKKAE 1747
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 388856237 1213 EQRSQlEAEVQSLAQQNKDLEQQGLQRVKQLETKIGEL-----ESQNRELEKQLSNVSNHASN 1270
Cdd:PTZ00121 1748 EAKKD-EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEldeedEKRRMEVDKKIKDIFDNFAN 1809
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
768-1269 |
6.16e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 80.88 E-value: 6.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 768 EKLRRLGEEVERKREMVRKLESdLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRT----LREQMNRFEE----- 838
Cdd:PRK03918 214 SELPELREELEKLEKEVKELEE-LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKeieeLEEKVKELKElkeka 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 839 ---SACQAQARAVQAAIADVEQRMQRqLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQlRAEAA 915
Cdd:PRK03918 293 eeyIKLSEFYEEYLDELREIEKRLSR-LEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYE-EAKAK 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 916 EQTSEEHKRNAKDVQ-GETARQLTQGSQDLASLRTELESSTAAKVAATTLASDRAKAIAELEVlLKQVC----SELGAEK 990
Cdd:PRK03918 371 KEELERLKKRLTGLTpEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK-AKGKCpvcgRELTEEH 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 991 QARMKAE--EQVAATQEQVLDSRSRADQADDKLRELELAVSAERRMMAERDELfhafeRRLESAEQRLQVQDkrcarmLG 1068
Cdd:PRK03918 450 RKELLEEytAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELA-----EQLKELEEKLKKYN------LE 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1069 KLEGR-EEMDDLLER---IKAGAAGVAKKKTAGQDIAGLLSSLETHIGDLELELARANAQLPDTPRDSVA--RSDVSATP 1142
Cdd:PRK03918 519 ELEKKaEEYEKLKEKlikLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEelEERLKELE 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1143 TVY--HAELEASKQEVQRWKAEAERLEASLK----------------SQTMKEEEAKVSTDEHRRLHALEVEMRALSEKN 1204
Cdd:PRK03918 599 PFYneYLELKDAEKELEREEKELKKLEEELDkafeelaetekrleelRKELEELEKKYSEEEYEELREEYLELSRELAGL 678
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 388856237 1205 EASKRQAEEQRSQLEAEVQSLAQQNKDLEQ---------QGLQRVKQLETKIGELesQNRELEKQLSNVSNHAS 1269
Cdd:PRK03918 679 RAELEELEKRREEIKKTLEKLKEELEEREKakkelekleKALERVEELREKVKKY--KALLKERALSKVGEIAS 750
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
764-1265 |
3.91e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.17 E-value: 3.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 764 ASAPEKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMNRFEESACQA 843
Cdd:TIGR02168 347 EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 844 QARAVQAAIADVEQRM---QRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQTSE 920
Cdd:TIGR02168 427 LKKLEEAELKELQAELeelEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSE 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 921 ------EHKRNAKDVQGETARQLTQGSQDLASLRTEL---------ESSTAAKVAATTLASDRAKAIAELEVLLKQvcse 985
Cdd:TIGR02168 507 gvkallKNQSGLSGILGVLSELISVDEGYEAAIEAALggrlqavvvENLNAAKKAIAFLKQNELGRVTFLPLDSIK---- 582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 986 lGAEKQARmkaEEQVAATQEQVLDSRSRADQADDKLReleLAVSAERRMMAERDELFHAFE-RRLESAEQRLQVQD---- 1060
Cdd:TIGR02168 583 -GTEIQGN---DREILKNIEGFLGVAKDLVKFDPKLR---KALSYLLGGVLVVDDLDNALElAKKLRPGYRIVTLDgdlv 655
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1061 KRCARMLGK--------LEGREEMDDLLERIKAGAAGVAKKKTAgqdiaglLSSLETHIGDLELELARANAQLPDTPRDS 1132
Cdd:TIGR02168 656 RPGGVITGGsaktnssiLERRREIEELEEKIEELEEKIAELEKA-------LAELRKELEELEEELEQLRKELEELSRQI 728
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1133 VARSdvsatptvyhAELEASKQEVQRWKAEAERLEASLKSQTMKEEEAKVSTDEHR-RLHALEVEMRALSEKNEASKRQA 1211
Cdd:TIGR02168 729 SALR----------KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEeELAEAEAEIEELEAQIEQLKEEL 798
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 388856237 1212 EEQRSQLEAEVQSLAQQNKDLEQQGlQRVKQLETKIGELESQNRELEKQLSNVS 1265
Cdd:TIGR02168 799 KALREALDELRAELTLLNEEAANLR-ERLESLERRIAATERRLEDLEEQIEELS 851
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
772-1259 |
1.13e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 73.64 E-value: 1.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 772 RLGEEVERKREMVRKLEsDLTSARDAakRREESSNRLTqqlEEQYRERSRAVEELRtlreqmnRFEESACQAQARAVQAA 851
Cdd:PTZ00121 1115 RKAEEAKKKAEDARKAE-EARKAEDA--RKAEEARKAE---DAKRVEIARKAEDAR-------KAEEARKAEDAKKAEAA 1181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 852 IADVEQRMQRQLEQersrdqdKEDAlvnAKAEvmAGQRALSDLQARLAAAQDEAKTLQL--RAEAAEQTSEEHKRNAKDV 929
Cdd:PTZ00121 1182 RKAEEVRKAEELRK-------AEDA---RKAE--AARKAEEERKAEEARKAEDAKKAEAvkKAEEAKKDAEEAKKAEEER 1249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 930 QGETARQLTQGSQDLASLRTELESSTAAKVAATTLASDRAKAIAELevllkQVCSELGAEKQARMKAEEQVAATQ--EQV 1007
Cdd:PTZ00121 1250 NNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA-----KKAEEKKKADEAKKKAEEAKKADEakKKA 1324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1008 LDSRSRADQADDKLRELELAVSAERRMMAERDELFHAFERRLESAEQRLQVQDKRCARMLGKLEGREEMDDL---LERIK 1084
Cdd:PTZ00121 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAkkkAEEDK 1404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1085 AGAAGVAKKKTAGQDIAGLLSSLETHIGDLELELARANAQLPDTPRDSvARSDVSATPTVYHAElEASKQEVQRWKAEAE 1164
Cdd:PTZ00121 1405 KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK-AEEAKKAEEAKKKAE-EAKKADEAKKKAEEA 1482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1165 RLEASLKSqtmKEEEAKVSTDEHRRLHALEVEMRALSEKNEASK----RQAEEQRSQLEA----EVQSLAQQNKDLEQQG 1236
Cdd:PTZ00121 1483 KKADEAKK---KAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKadeaKKAEEAKKADEAkkaeEKKKADELKKAEELKK 1559
|
490 500
....*....|....*....|...
gi 388856237 1237 LQRVKQLETKIGELESQNRELEK 1259
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMALRK 1582
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
773-1258 |
1.85e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 72.77 E-value: 1.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 773 LGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMNRFEESAcqaqaravqaai 852
Cdd:PRK02224 277 LAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEA------------ 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 853 adveQRMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQTSEehkrNAKDVQGE 932
Cdd:PRK02224 345 ----ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLG----NAEDFLEE 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 933 TARQLTQGSQDLASLRTELESStaakvaattlasdrAKAIAELEVLLKQ-VCSELGAEKQ------ARMKAEEQVAATQE 1005
Cdd:PRK02224 417 LREERDELREREAELEATLRTA--------------RERVEEAEALLEAgKCPECGQPVEgsphveTIEEDRERVEELEA 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1006 QVLDSRSRADQADDKLRELELAVSAERRmMAERDELFHAFERRLESAEQRLQVQDKRCARMlgklegREEMDDLLERIKA 1085
Cdd:PRK02224 483 ELEDLEEEVEEVEERLERAEDLVEAEDR-IERLEERREDLEELIAERRETIEEKRERAEEL------RERAAELEAEAEE 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1086 GAAGVAKKKTAGQDIAGLLSSLETHIGDLelelaranaqlpDTPRDSVARsdvsatptvyhaeLEASKQEVQRWKAEAER 1165
Cdd:PRK02224 556 KREAAAEAEEEAEEAREEVAELNSKLAEL------------KERIESLER-------------IRTLLAAIADAEDEIER 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1166 LEASLKSQTMKEEEAKVSTDEHR-RLHALEVEMR-ALSEKNEASKRQAEEQRSQLEAEVQSLAQQNKDLeqqgLQRVKQL 1243
Cdd:PRK02224 611 LREKREALAELNDERRERLAEKReRKRELEAEFDeARIEEAREDKERAEEYLEQVEEKLDELREERDDL----QAEIGAV 686
|
490
....*....|....*
gi 388856237 1244 ETKIGELESQNRELE 1258
Cdd:PRK02224 687 ENELEELEELRERRE 701
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
768-1263 |
1.89e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.78 E-value: 1.89e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 768 EKLRRLGEEVERKREMVRKLESDLTSARdaAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMNRFEESACQAQARA 847
Cdd:TIGR02168 407 ARLERLEDRRERLQQEIEELLKKLEEAE--LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 848 VQAAIA-DVEQRMQRQLEQErsrdQDKEDALVNAKAEVMAGQRALSDL---QARLAAAQDEA--KTLQL----RAEAAEQ 917
Cdd:TIGR02168 485 AQLQARlDSLERLQENLEGF----SEGVKALLKNQSGLSGILGVLSELisvDEGYEAAIEAAlgGRLQAvvveNLNAAKK 560
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 918 TSEEHKRNAK--------------DVQGETARQLTQGSQDLASLRTELESSTAAKVA----------ATTLAS--DRAKA 971
Cdd:TIGR02168 561 AIAFLKQNELgrvtflpldsikgtEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvVDDLDNalELAKK 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 972 IAELEVLL-----------------KQVCSELGAEKQARMKAEEQVAATQEQVLDSRSRADQADDKLRELELAVSAERRM 1034
Cdd:TIGR02168 641 LRPGYRIVtldgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE 720
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1035 MAERDELFHAFERRLESAEQRLQVQDKRCARMLGKL-EGREEMDDLLERI----KAGAAGVAKKKTAGQDIAGLLSSLET 1109
Cdd:TIGR02168 721 LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELtELEAEIEELEERLeeaeEELAEAEAEIEELEAQIEQLKEELKA 800
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1110 higdLELELARANAQLPDTprdSVARSDVSATPTVYHAELEASKQEVQRWKAEAERLEASLKSQTMKEEEAKVSTDEHRR 1189
Cdd:TIGR02168 801 ----LREALDELRAELTLL---NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES 873
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 388856237 1190 lhALEVEMRALSEKNEASKRqAEEQRSQLEAEVQSLAQQNKDLEQQGL---QRVKQLETKIGELESQNRELEKQLSN 1263
Cdd:TIGR02168 874 --ELEALLNERASLEEALAL-LRSELEELSEELRELESKRSELRRELEelrEKLAQLELRLEGLEVRIDNLQERLSE 947
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
769-1266 |
4.70e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 71.64 E-value: 4.70e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 769 KLRRLGEEVERKREMVRKLESDLTS-------ARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMNRFEESAC 841
Cdd:TIGR02169 351 RRDKLTEEYAELKEELEDLRAELEEvdkefaeTRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIA 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 842 QAQARAVQAAIADVEQRMQ-RQLEQERSRDQDK----EDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAE 916
Cdd:TIGR02169 431 GIEAKINELEEEKEDKALEiKKQEWKLEQLAADlskyEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGR 510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 917 QTSEEHKRNAKDVQGeTARQLTQGSQDLAslrTELESSTAAKVAATTLASDR--AKAIAEL--------------EVLLK 980
Cdd:TIGR02169 511 AVEEVLKASIQGVHG-TVAQLGSVGERYA---TAIEVAAGNRLNNVVVEDDAvaKEAIELLkrrkagratflplnKMRDE 586
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 981 QVCSELGAEKQARMKA------EEQVAATQEQVLD-------------------------------------SRSRADQA 1017
Cdd:TIGR02169 587 RRDLSILSEDGVIGFAvdlvefDPKYEPAFKYVFGdtlvvedieaarrlmgkyrmvtlegelfeksgamtggSRAPRGGI 666
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1018 DDKLRELELAVSAERRMMAERDELFHAFE--RRLESAEQRLQVQDKRCARMLGKLEGREEMDD-----LLERIKAGAAGV 1090
Cdd:TIGR02169 667 LFSRSEPAELQRLRERLEGLKRELSSLQSelRRIENRLDELSQELSDASRKIGEIEKEIEQLEqeeekLKERLEELEEDL 746
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1091 AKKKTAGQDIAGLLSSLETHIGDLELELARANAQLPDtPRDSVARSDVsatPTVyHAELEASKQEVQRWKAEAERLEASL 1170
Cdd:TIGR02169 747 SSLEQEIENVKSELKELEARIEELEEDLHKLEEALND-LEARLSHSRI---PEI-QAELSKLEEEVSRIEARLREIEQKL 821
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1171 KSQTMKEEEAKVSTDEhrrlhaLEVEMRALSEKNEASKRQAEEqrsqLEAEVQSLAQQNKDLEQQglqrVKQLETKIGEL 1250
Cdd:TIGR02169 822 NRLTLEKEYLEKEIQE------LQEQRIDLKEQIKSIEKEIEN----LNGKKEELEEELEELEAA----LRDLESRLGDL 887
|
570
....*....|....*.
gi 388856237 1251 ESQNRELEKQLSNVSN 1266
Cdd:TIGR02169 888 KKERDELEAQLRELER 903
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
768-1260 |
7.44e-12 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 70.57 E-value: 7.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 768 EKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLE--EQYRERSRAVEELRTLREQMNRFEEsacqaQA 845
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllPLYQELEALEAELAELPERLEELEE-----RL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 846 RAVQAAIADVEQRMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQtsEEHKRN 925
Cdd:COG4717 156 EELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEE--ELEQLE 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 926 AKDVQGETARQLTQGSQDLASLRTELESSTAAKVAATTLASDRAKAIAELEVLLKQVCSELGAEKQARMKAEEQVAATQE 1005
Cdd:COG4717 234 NELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPAL 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1006 QVLDSRSRADQADDKLRELELAVSAERRMMAERDELFHAfERRLESAEQRLQVQdkrcarmlgklEGREEMDDLLERIKA 1085
Cdd:COG4717 314 EELEEEELEELLAALGLPPDLSPEELLELLDRIEELQEL-LREAEELEEELQLE-----------ELEQEIAALLAEAGV 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1086 GaagvakkktagqDIAGLLSSLETHigdlelelaranaqlpdtprdsvarsdvsatptvyhaeleaskQEVQRWKAEAER 1165
Cdd:COG4717 382 E------------DEEELRAALEQA-------------------------------------------EEYQELKEELEE 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1166 LEASLKSQTMKEEEAKVSTDEHR---RLHALEVEMRALsekneaskrqaEEQRSQLEAEVQSLAQQNKDLEQQGlqRVKQ 1242
Cdd:COG4717 407 LEEQLEELLGELEELLEALDEEEleeELEELEEELEEL-----------EEELEELREELAELEAELEQLEEDG--ELAE 473
|
490
....*....|....*...
gi 388856237 1243 LETKIGELESQNRELEKQ 1260
Cdd:COG4717 474 LLQELEELKAELRELAEE 491
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
768-1266 |
1.07e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 70.07 E-value: 1.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 768 EKLRRLGEEVERKREmvRKLESDLTSARDAAKRreessnrLTQQLEEQYRERSRAVEELRTLREQMNRFEESacqaqARA 847
Cdd:PRK02224 187 GSLDQLKAQIEEKEE--KDLHERLNGLESELAE-------LDEEIERYEEQREQARETRDEADEVLEEHEER-----REE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 848 VQAAIADVEQRMQRQLEQERSRDQDKEdalvnakaEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQTSEEhkrnAK 927
Cdd:PRK02224 253 LETLEAEIEDLRETIAETEREREELAE--------EVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREE----LE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 928 DVQGETARQLTQGSQDLASLRTELESSTAAKVAATTLASDRAKAIAELEVLLKQVCSELGAEKQARMKAEEQVAATQEQV 1007
Cdd:PRK02224 321 DRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERF 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1008 LDSRSRADQADDKLRELELAVSAERRMMAERDELFHAFERRLESAEQRLQ----------VQDKRCARMLGKLEGR-EEM 1076
Cdd:PRK02224 401 GDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEagkcpecgqpVEGSPHVETIEEDRERvEEL 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1077 DDLLERIKAGAAGVAKKKTAGQDiaglLSSLETHIGDLElELARANAQLPDTPRDSV-ARSDVSATPTVYHAELEASKQE 1155
Cdd:PRK02224 481 EAELEDLEEEVEEVEERLERAED----LVEAEDRIERLE-ERREDLEELIAERRETIeEKRERAEELRERAAELEAEAEE 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1156 vQRWKAEAERLEASLKSQTMKEEEAKVSTDEHRR---------LHALEVEMRALSEKNEASKRQAE-------------E 1213
Cdd:PRK02224 556 -KREAAAEAEEEAEEAREEVAELNSKLAELKERIeslerirtlLAAIADAEDEIERLREKREALAElnderrerlaekrE 634
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 388856237 1214 QRSQLEAEVQ----SLAQQNKDLEQQGLQRVkqlETKIGELESQNRELEKQLSNVSN 1266
Cdd:PRK02224 635 RKRELEAEFDeariEEAREDKERAEEYLEQV---EEKLDELREERDDLQAEIGAVEN 688
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
790-1266 |
3.14e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 68.79 E-value: 3.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 790 DLTSARDAAKRREESSNRLtQQLEEQYRERSRAVEELRTLREQMNRFEesacqaqaravQAAIADVEQRMQRQLEQERSR 869
Cdd:COG4913 236 DLERAHEALEDAREQIELL-EPIRELAERYAAARERLAELEYLRAALR-----------LWFAQRRLELLEAELEELRAE 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 870 DQDKEDALVNAKAEVMAGQRALSDLQARLAAAQ-DEAKTLQLRAEAAEQTSEEHKRNAKDVQgetarqltqgsQDLASLR 948
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLE-----------ALLAALG 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 949 TELESSTAAKVAATTLASDRAKAIAELEVLLKQVCSELGAEKQARMKAEEQVAATQEQVLDSRSRADQADDKLREL---E 1025
Cdd:COG4913 373 LPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAlaeA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1026 LAVSAERRM-------MAERDELFH-AFERRLESAEQRLQVQDKRCARMLGKLE---GREEMDdlLERIKAGAAGVAKKK 1094
Cdd:COG4913 453 LGLDEAELPfvgelieVRPEEERWRgAIERVLGGFALTLLVPPEHYAAALRWVNrlhLRGRLV--YERVRTGLPDPERPR 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1095 TAGQDIAGLLSSLETHIGD-LELELA-RANAQLPDTPRDsVARSDVSATPT--VYHA----ELEASKQEVQRW------- 1159
Cdd:COG4913 531 LDPDSLAGKLDFKPHPFRAwLEAELGrRFDYVCVDSPEE-LRRHPRAITRAgqVKGNgtrhEKDDRRRIRSRYvlgfdnr 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1160 ------KAEAERLEASLKSQTMKEEEAKvstDEHRRLHALEVEMRALSEKNEASK--RQAEEQRSQLEAEVQSLAQQNKD 1231
Cdd:COG4913 610 aklaalEAELAELEEELAEAEERLEALE---AELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELERLDASSDD 686
|
490 500 510
....*....|....*....|....*....|....*
gi 388856237 1232 LEQQGlQRVKQLETKIGELESQNRELEKQLSNVSN 1266
Cdd:COG4913 687 LAALE-EQLEELEAELEELEEELDELKGEIGRLEK 720
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
810-1269 |
3.17e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 68.79 E-value: 3.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 810 QQLEEQYRERSRAVEELRTLREQMNRFEEsacqaqaravqaaIADVEQRMQRQLEQERSRDQDKedalvnAKAEVMAGQR 889
Cdd:COG4913 228 DALVEHFDDLERAHEALEDAREQIELLEP-------------IRELAERYAAARERLAELEYLR------AALRLWFAQR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 890 ALSDLQARLAAAQDEAKTLQLRAEAAEQTSEEHKRNAKDVQgetARQLTQGSQDLASLRTELESSTAAKVAATTLASDRA 969
Cdd:COG4913 289 RLELLEAELEELRAELARLEAELERLEARLDALREELDELE---AQIRGNGGDRLEQLEREIERLERELEERERRRARLE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 970 KAIAELEV-----------LLKQVCSELGAEKQARMKAEEQVAATQEQVLDSRSRADQADDKLRELELAVSA-ERRMMAE 1037
Cdd:COG4913 366 ALLAALGLplpasaeefaaLRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNiPARLLAL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1038 RDELFH---------------------------AFERRLESAEQRLQVQDKRCARMLGKLE---GREEMDdlLERIKAGA 1087
Cdd:COG4913 446 RDALAEalgldeaelpfvgelievrpeeerwrgAIERVLGGFALTLLVPPEHYAAALRWVNrlhLRGRLV--YERVRTGL 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1088 AGVAKKKTAGQDIAGLLSSLETHIGD-LELELARANA--------QLPDTPRdSVARS-------------DVSATPTVY 1145
Cdd:COG4913 524 PDPERPRLDPDSLAGKLDFKPHPFRAwLEAELGRRFDyvcvdspeELRRHPR-AITRAgqvkgngtrhekdDRRRIRSRY 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1146 -------------HAELEASKQEVQRWKAEAERLEASLKSQTMKEEE----AKVSTDE------HRRLHALEVEMRALsE 1202
Cdd:COG4913 603 vlgfdnraklaalEAELAELEEELAEAEERLEALEAELDALQERREAlqrlAEYSWDEidvasaEREIAELEAELERL-D 681
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 388856237 1203 KNEASKRQAEEQRSQLEAEVQSLAQQNKDLEqqglQRVKQLETKIGELESQNRELEKQLSNVSNHAS 1269
Cdd:COG4913 682 ASSDDLAALEEQLEELEAELEELEEELDELK----GEIGRLEKELEQAEEELDELQDRLEAAEDLAR 744
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
768-1263 |
4.63e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 68.02 E-value: 4.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 768 EKLRRLGEEVERKREMVRKLESDLTSARdaAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMNRFEESACQAQARA 847
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLRAALR--LWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQI 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 848 VQAAIADVEQ--RMQRQLEQERSRDQDKEDALvnakaevmagQRALSDLQARLAAAQDEAKTLQLRAEAAEQTSEEHKRN 925
Cdd:COG4913 333 RGNGGDRLEQleREIERLERELEERERRRARL----------EALLAALGLPLPASAEEFAALRAEAAALLEALEEELEA 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 926 AKDVQGETARQLTQGSQDLASLRTELESstaakvaattLASdRAKAI-AELEVLLKQVCSELG-AEKQARMKAEE-QVAA 1002
Cdd:COG4913 403 LEEALAEAEAALRDLRRELRELEAEIAS----------LER-RKSNIpARLLALRDALAEALGlDEAELPFVGELiEVRP 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1003 TQ-------EQVLDSRSRA---------------DQADDKLR----ELELAVSAERRMMAERDEL-------FHAF---- 1045
Cdd:COG4913 472 EEerwrgaiERVLGGFALTllvppehyaaalrwvNRLHLRGRlvyeRVRTGLPDPERPRLDPDSLagkldfkPHPFrawl 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1046 ERRLESAEQRLQVQD----KRCAR------MLGKLEGREEMDD---LLERIKAGAAGVAKKKTAGQDIAgllsSLETHIG 1112
Cdd:COG4913 552 EAELGRRFDYVCVDSpeelRRHPRaitragQVKGNGTRHEKDDrrrIRSRYVLGFDNRAKLAALEAELA----ELEEELA 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1113 DLELELARANAQLpdtpRDSVARSDVSATPTVYHAE---LEASKQEVQRWKAEAERLEAS---LKSQTMKEEEAKVSTDE 1186
Cdd:COG4913 628 EAEERLEALEAEL----DALQERREALQRLAEYSWDeidVASAEREIAELEAELERLDASsddLAALEEQLEELEAELEE 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1187 HR-RLHALEVEMRALSEKNEASKRQAEEQRSQLEA--------EVQSLAQQNKDLEQQGLQR--VKQLETKIGELESQNR 1255
Cdd:COG4913 704 LEeELDELKGEIGRLEKELEQAEEELDELQDRLEAaedlarleLRALLEERFAAALGDAVERelRENLEERIDALRARLN 783
|
....*...
gi 388856237 1256 ELEKQLSN 1263
Cdd:COG4913 784 RAEEELER 791
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
755-1085 |
5.54e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.17 E-value: 5.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 755 AISGFSFLDASAPEKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQqleeqyrERSRAVEELRTLREQMN 834
Cdd:TIGR02169 654 AMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQ-------ELSDASRKIGEIEKEIE 726
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 835 RFEESacqaqaravqaaiadvEQRMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTL------ 908
Cdd:TIGR02169 727 QLEQE----------------EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLearlsh 790
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 909 ----QLRAEAAEQtSEEHKRNAKDVQgETARQLTQGSQDLASLRTELESSTAAKVAATTLASDRAKAIAELEVLLKQVCS 984
Cdd:TIGR02169 791 sripEIQAELSKL-EEEVSRIEARLR-EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEE 868
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 985 ELgAEKQARMKA-EEQVAATQEQVLDSRSRADQADDKLRELELAVSAERRMMAERDELFHAFERRLESAEQRLQ--VQDK 1061
Cdd:TIGR02169 869 EL-EELEAALRDlESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGedEEIP 947
|
330 340
....*....|....*....|....
gi 388856237 1062 RCARMLGKLEgrEEMDDLLERIKA 1085
Cdd:TIGR02169 948 EEELSLEDVQ--AELQRVEEEIRA 969
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
921-1263 |
1.29e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 1.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 921 EHKRNAKDVQgETARQLTQGSQDLASLRTELEsstaakvAATTLASDRAKAIAELEVLLKQVCSELGAEKQARMKAEEQV 1000
Cdd:TIGR02168 678 EIEELEEKIE-ELEEKIAELEKALAELRKELE-------ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1001 AATQEQVLDSRSRADQADDKLRELElavsaerrmmaerdELFHAFERRLESAEQRLQVQDKRCArmlgklEGREEMDDLL 1080
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAE--------------EELAEAEAEIEELEAQIEQLKEELK------ALREALDELR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1081 ERIKAGAAGVAKKKTAGQDIAGLLSSLETHIGDLELELARANAQLpdtPRDSVARSDVSATPTVYHAELEASKQEvqrwK 1160
Cdd:TIGR02168 810 AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI---ESLAAEIEELEELIEELESELEALLNE----R 882
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1161 AEAERLEASLKSQtMKEEEAKVSTDEHRRlHALEVEMRALSEKNEASKRQAEEQRSQLEAEVQSLAQQNKDLEQQGLQRV 1240
Cdd:TIGR02168 883 ASLEEALALLRSE-LEELSEELRELESKR-SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALE 960
|
330 340
....*....|....*....|...
gi 388856237 1241 KQLETKIGELESQNRELEKQLSN 1263
Cdd:TIGR02168 961 NKIEDDEEEARRRLKRLENKIKE 983
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
770-1253 |
3.48e-10 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 65.20 E-value: 3.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 770 LRRLGEEVERKREMVRK----------LESDLTSARDAAKRREESSNRLTQQLE------EQYRERSRAVEELRTLREQM 833
Cdd:pfam01576 249 LARLEEETAQKNNALKKireleaqiseLQEDLESERAARNKAEKQRRDLGEELEalktelEDTLDTTAAQQELRSKREQE 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 834 NRFEESACQAQARAVQAAIADVEQRMQRQLEQersrdqdKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQlrae 913
Cdd:pfam01576 329 VTELKKALEEETRSHEAQLQEMRQKHTQALEE-------LTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQ---- 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 914 AAEQTSEeHKRNAKDVQ--------GETARQLTQGSQDLASLRTELESSTAAKVAATTLASDRAKAIAELEVLLKQVCS- 984
Cdd:pfam01576 398 QAKQDSE-HKRKKLEGQlqelqarlSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQEl 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 985 ---------------------------ELGAEKQARMKAEEQVAATQEQVLDSRSRADQaddKLRELELAVSAERRMMAE 1037
Cdd:pfam01576 477 lqeetrqklnlstrlrqledernslqeQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEE---DAGTLEALEEGKKRLQRE 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1038 RDELFHAFER------RLESAEQRLQ-------VQDKRCARMLGKLEGRE-EMDDLL------------ERIKAGAAGVA 1091
Cdd:pfam01576 554 LEALTQQLEEkaaaydKLEKTKNRLQqelddllVDLDHQRQLVSNLEKKQkKFDQMLaeekaisaryaeERDRAEAEARE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1092 KKKTAgqdiAGLLSSLETHIGDLElELARANAQLPDTPRDSVARSDvSATPTVYhaELEASK----QEVQRWKAEAERLE 1167
Cdd:pfam01576 634 KETRA----LSLARALEEALEAKE-ELERTNKQLRAEMEDLVSSKD-DVGKNVH--ELERSKraleQQVEEMKTQLEELE 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1168 ASLKSQtmkeEEAKVStdehrrlhaLEVEMRALSEKNE----ASKRQAEEQRSQLEAEVQSLAQQNKDLEQQGLQRV--- 1240
Cdd:pfam01576 706 DELQAT----EDAKLR---------LEVNMQALKAQFErdlqARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVaak 772
|
570
....*....|...
gi 388856237 1241 KQLETKIGELESQ 1253
Cdd:pfam01576 773 KKLELDLKELEAQ 785
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
794-1248 |
5.32e-10 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 64.98 E-value: 5.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 794 ARDAAKRREESSNRLTQQleeqyRERSRAVEELRtlrEQMNRFEEsacqaqaravqaaiadveqrMQRQLEQERSRDQDK 873
Cdd:PRK04863 275 MRHANERRVHLEEALELR-----RELYTSRRQLA---AEQYRLVE--------------------MARELAELNEAESDL 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 874 EDALVNAK---AEVMAGQRAlsdlQARLAAAQDEAKTLQLRAEAAEQTSEEhkrnAKDVQGETARQLTQGSQDLASLRTE 950
Cdd:PRK04863 327 EQDYQAASdhlNLVQTALRQ----QEKIERYQADLEELEERLEEQNEVVEE----ADEQQEENEARAEAAEEEVDELKSQ 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 951 LESSTAAKVAATTLASDRAKAIAELEVLlKQVC--SELGAEK----QARMKAEEQVAAtqEQVLDSRSRADQADDKLREL 1024
Cdd:PRK04863 399 LADYQQALDVQQTRAIQYQQAVQALERA-KQLCglPDLTADNaedwLEEFQAKEQEAT--EELLSLEQKLSVAQAAHSQF 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1025 ELAVSAERRMMAERD-----ELFHAFERRLEsaEQRLQVQDKRCARM-LGKLEGREEMDDLLERIKAGAAGVAKKK-TAG 1097
Cdd:PRK04863 476 EQAYQLVRKIAGEVSrseawDVARELLRRLR--EQRHLAEQLQQLRMrLSELEQRLRQQQRAERLLAEFCKRLGKNlDDE 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1098 QDIAGLLSSLETHIGDLELELARANAQlpdtprdsvaRSDVsatptvyHAELEASKQEVQR-------WKAEAERLEAsL 1170
Cdd:PRK04863 554 DELEQLQEELEARLESLSESVSEARER----------RMAL-------RQQLEQLQARIQRlaarapaWLAAQDALAR-L 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1171 KSQTMKEEEAKVSTDEHRRLHALEVemralsekneaskRQAEEQRSQLEAEVQSLAQQNKDLEQQG---LQRVKQLETKI 1247
Cdd:PRK04863 616 REQSGEEFEDSQDVTEYMQQLLERE-------------RELTVERDELAARKQALDEEIERLSQPGgseDPRLNALAERF 682
|
.
gi 388856237 1248 G 1248
Cdd:PRK04863 683 G 683
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
747-1235 |
7.74e-10 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 64.09 E-value: 7.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 747 NRIESDLSAISGFSFLDASAPEKLRRLGEEVERKREMVRKLESDLTSARDAAKrreESSNRLTQQLEEQYRERSRAVEEL 826
Cdd:pfam12128 248 QEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWK---EKRDELNGELSAADAAVAKDRSEL 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 827 RTLREQMNRFEEsacqaqaravqaaiADVEQRMQrqleqersrDQDKEDALvnakaevmagQRALSDLQARLAA----AQ 902
Cdd:pfam12128 325 EALEDQHGAFLD--------------ADIETAAA---------DQEQLPSW----------QSELENLEERLKAltgkHQ 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 903 D-EAKTLQLRAEAAEQTSEEHKRNAKD---VQGETARQLTQGSQDLASLRTELESSTAAKVAATTLASDRAK-AIAELEV 977
Cdd:pfam12128 372 DvTAKYNRRRSKIKEQNNRDIAGIKDKlakIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKsRLGELKL 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 978 LLKQVcselgaekQARMKAEEQVAATQEQVLDSRSRADQADdklRELELAVSAERRMMAERDELfhafERRLESAEQRLQ 1057
Cdd:pfam12128 452 RLNQA--------TATPELLLQLENFDERIERAREEQEAAN---AEVERLQSELRQARKRRDQA----SEALRQASRRLE 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1058 VQDKRCARMlgKLEGREEMDDLLERIKAGAAGVAkkktagQDIAGLLSSLETHIGDLELELARANAQLPDT------PRD 1131
Cdd:pfam12128 517 ERQSALDEL--ELQLFPQAGTLLHFLRKEAPDWE------QSIGKVISPELLHRTDLDPEVWDGSVGGELNlygvklDLK 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1132 SVARSDVSATPTVYHAELEASKQEVQRWKAEAERLE-------ASLKSQTMKEEEAKVSTDEHR-RLHALEVEMRALSEK 1203
Cdd:pfam12128 589 RIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEeqlvqanGELEKASREETFARTALKNARlDLRRLFDEKQSEKDK 668
|
490 500 510
....*....|....*....|....*....|....*.
gi 388856237 1204 ----NEASKRQAEEQRSQLEAEVQSLAQQNKDLEQQ 1235
Cdd:pfam12128 669 knkaLAERKDSANERLNSLEAQLKQLDKKHQAWLEE 704
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
769-1261 |
7.88e-10 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 63.97 E-value: 7.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 769 KLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMNrfeesacqaqarAV 848
Cdd:pfam05483 255 KMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQ------------IA 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 849 QAAIADVEQRMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAK--TLQLRAEAAEQTSEEHKRNA 926
Cdd:pfam05483 323 TKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKiiTMELQKKSSELEEMTKFKNN 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 927 KDVQGETARQLTQGSQDLASLRTELESST----AAKVAATTLASDRAKAIAELEV-----------LLKQVcSELGAE-K 990
Cdd:pfam05483 403 KEVELEELKKILAEDEKLLDEKKQFEKIAeelkGKEQELIFLLQAREKEIHDLEIqltaiktseehYLKEV-EDLKTElE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 991 QARMKAEEQVAATQEQVLDSRSRADQADDKLRELEL-------AVSAERRMMAE-----------RDEL----------- 1041
Cdd:pfam05483 482 KEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKhqediinCKKQEERMLKQienleekemnlRDELesvreefiqkg 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1042 -------------FHAFERRLESAEQRLQVQDKRCARMLGKLEGREE-MDDLLERIKAgaagvAKKKTAGQDIAglLSSL 1107
Cdd:pfam05483 562 devkckldkseenARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKnIEELHQENKA-----LKKKGSAENKQ--LNAY 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1108 ETHIGDLELELARANAQLPDTPRDsvarsdvsatptvYHAELEASKQEVQRWKAEAErleaslKSQTMKEEEAKVSTDEH 1187
Cdd:pfam05483 635 EIKVNKLELELASAKQKFEEIIDN-------------YQKEIEDKKISEEKLLEEVE------KAKAIADEAVKLQKEID 695
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 388856237 1188 RRLHALEVEMRALSEKNEAS-KRQAEEQRSQLEaevqslAQQNKDLEQQGLQrvKQLETKIGELESQNRELEKQL 1261
Cdd:pfam05483 696 KRCQHKIAEMVALMEKHKHQyDKIIEERDSELG------LYKNKEQEQSSAK--AALEIELSNIKAELLSLKKQL 762
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
768-1269 |
8.13e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.39 E-value: 8.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 768 EKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMNRFEESACQAQARA 847
Cdd:PTZ00121 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELK 1411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 848 VQAAIADVEQRMQRQLEQERSRDQDKEDALVNAKAEVM---AGQRALSDLQARLAAAQDEAKTLQLRAEAAEQtSEEHKR 924
Cdd:PTZ00121 1412 KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAkkkAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK-ADEAKK 1490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 925 NAKDVQ--GETARQLTQGSQDLASLRTELESSTA--AKVAATTLASDRAKAIAElevllKQVCSELGAEKQARmKAEEQV 1000
Cdd:PTZ00121 1491 KAEEAKkkADEAKKAAEAKKKADEAKKAEEAKKAdeAKKAEEAKKADEAKKAEE-----KKKADELKKAEELK-KAEEKK 1564
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1001 AATQEQVLDSRS-----RADQAD--DKLRELELAVSAERRMMAERDELFHAFERRLESAEQRLQVQDKRCARMLGKLEGR 1073
Cdd:PTZ00121 1565 KAEEAKKAEEDKnmalrKAEEAKkaEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE 1644
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1074 E-----EMDDLLERIKAGAAGVAKKKTAGQDIAGLLSSLE------THIGDLELELARANAQLPDTPRDSVARSD-VSAT 1141
Cdd:PTZ00121 1645 EkkkaeELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEedekkaAEALKKEAEEAKKAEELKKKEAEEKKKAEeLKKA 1724
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1142 PTVYHAELEASKQEVQ--RWKAEAERLEASLKSQTMKEEEAKVSTDEHRRLHALEVEMRALSEKNEASKRQAEEQRSQLE 1219
Cdd:PTZ00121 1725 EEENKIKAEEAKKEAEedKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIF 1804
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 388856237 1220 AEVQSLAQQNK-------DLEQQGLQRVKQLETKIGELESQNRELEKQLSNVSNHAS 1269
Cdd:PTZ00121 1805 DNFANIIEGGKegnlvinDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENG 1861
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
765-1085 |
1.30e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 63.52 E-value: 1.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 765 SAPEKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLE----------------EQYRE-----RSRAV 823
Cdd:PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEelrerfgdapvdlgnaEDFLEelreeRDELR 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 824 EELR----TLREQMNRFEESACQAQARAVQAAIADVEQRMQ-RQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQArL 898
Cdd:PRK02224 426 EREAeleaTLRTARERVEEAEALLEAGKCPECGQPVEGSPHvETIEEDRERVEELEAELEDLEEEVEEVEERLERAED-L 504
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 899 AAAQDEAKTLQLRAEAAEQTSEEHkRNAKDVQGETARQLTQGSQDlasLRTELESSTAAKVAATTLASDRAKAIAELEvl 978
Cdd:PRK02224 505 VEAEDRIERLEERREDLEELIAER-RETIEEKRERAEELRERAAE---LEAEAEEKREAAAEAEEEAEEAREEVAELN-- 578
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 979 lkqvcSELGAEKQARmKAEEQVAATQEQVLDSRSRADQADDKLRELELAVSAERRMMAER----DELFHAF-ERRLESAE 1053
Cdd:PRK02224 579 -----SKLAELKERI-ESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKrerkRELEAEFdEARIEEAR 652
|
330 340 350
....*....|....*....|....*....|...
gi 388856237 1054 QRLQVQDKRCARMLGKL-EGREEMDDLLERIKA 1085
Cdd:PRK02224 653 EDKERAEEYLEQVEEKLdELREERDDLQAEIGA 685
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
860-1097 |
5.25e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.16 E-value: 5.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 860 QRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQTSEEHKRNAKDVQgetaRQLTQ 939
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR----AELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 940 GSQDLASLRTELESSTAAKVAATTLASDRAKAIAELEVLLKQVcselgaeKQARMKAEEQVAATQEQVLDSRSRADQADD 1019
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYL-------APARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1020 KLRELELAVSAERR----MMAERDELFHAFERRLESAEQRLQvqdkrcarmlGKLEGREEMDDLLERIKAGAAGVAKKKT 1095
Cdd:COG4942 175 ELEALLAELEEERAaleaLKAERQKLLARLEKELAELAAELA----------ELQQEAEELEALIARLEAEAAAAAERTP 244
|
..
gi 388856237 1096 AG 1097
Cdd:COG4942 245 AA 246
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
863-1235 |
5.41e-09 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 60.68 E-value: 5.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 863 LEQERSRDQDKEDAL-VNAKAEVmagqralsdLQARLAAAQDEAKTLQLRAEAAEQTSEEHKRNAKDVQGETARQLTQGS 941
Cdd:pfam07888 9 LEEESHGEEGGTDMLlVVPRAEL---------LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 942 QDLASLRTELESSTaAKVAATTLASDRAKAIAELEVLLKQVCSELGAEKQARMKA-EEQVAATQEQVLDS-------RSR 1013
Cdd:pfam07888 80 SRVAELKEELRQSR-EKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRElEEDIKTLTQRVLERetelermKER 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1014 ADQADDKLRE-----------LELAVSAERRMMAERDELFHAFERRLESAeQRLQVQDKRCARMLGKLEGRE-------- 1074
Cdd:pfam07888 159 AKKAGAQRKEeeaerkqlqakLQQTEEELRSLSKEFQELRNSLAQRDTQV-LQLQDTITTLTQKLTTAHRKEaenealle 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1075 EMDDLLERIKAGAAGVAKKKTAGQDIAGLLSSLETHIGDLELELARANAQLPDTprdSVA----RSDVSATPTVYHAELE 1150
Cdd:pfam07888 238 ELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADA---SLAlregRARWAQERETLQQSAE 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1151 ASKQEVQRWKAEAERLEASLKSQTMKEEEAKVSTDEHR--RLHALEVEMRALSEKnEASKRQAEEQRSQLEAEVQSLAQQ 1228
Cdd:pfam07888 315 ADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREKdcNRVQLSESRRELQEL-KASLRVAQKEKEQLQAEKQELLEY 393
|
....*..
gi 388856237 1229 NKDLEQQ 1235
Cdd:pfam07888 394 IRQLEQR 400
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
772-1253 |
5.52e-09 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 61.34 E-value: 5.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 772 RLGEEVERKREMVRKLESdLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRT-LREQMNRFEESACQAQARAVQA 850
Cdd:pfam01576 504 QLEEEEEAKRNVERQLST-LQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQqLEEKAAAYDKLEKTKNRLQQEL 582
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 851 AIADVEQRMQRQLEQERSRDQDKEDALVnAKAEVMAGQRALSDLQARLAAAQDEAKTLQL-RA-EAAEQTSEEHKRNAKD 928
Cdd:pfam01576 583 DDLLVDLDHQRQLVSNLEKKQKKFDQML-AEEKAISARYAEERDRAEAEAREKETRALSLaRAlEEALEAKEELERTNKQ 661
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 929 VQGETaRQLTQGSQDLASLRTELESStaaKVAATTLASDRAKAIAELEvllkqvcSELGAEKQARMKAEEQVAATQEQV- 1007
Cdd:pfam01576 662 LRAEM-EDLVSSKDDVGKNVHELERS---KRALEQQVEEMKTQLEELE-------DELQATEDAKLRLEVNMQALKAQFe 730
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1008 LDSRSRADQADDK-------LRELELAVSAERRM----MAERDEL---FHAFERRLESAEQ----------RLQVQDKRC 1063
Cdd:pfam01576 731 RDLQARDEQGEEKrrqlvkqVRELEAELEDERKQraqaVAAKKKLeldLKELEAQIDAANKgreeavkqlkKLQAQMKDL 810
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1064 ARMLGklEGREEMDDLLerikAGAAGVAKKktagqdiaglLSSLETHIGDLELELA---RANAQLpDTPRDSVARSDVSA 1140
Cdd:pfam01576 811 QRELE--EARASRDEIL----AQSKESEKK----------LKNLEAELLQLQEDLAaseRARRQA-QQERDELADEIASG 873
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1141 TptvyhAELEASKQEVQRWKAEAERLEASLKsqtmkEEEAKV-STDEHRRLHALEVEM--------RALSEKNEASKRQA 1211
Cdd:pfam01576 874 A-----SGKSALQDEKRRLEARIAQLEEELE-----EEQSNTeLLNDRLRKSTLQVEQlttelaaeRSTSQKSESARQQL 943
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 388856237 1212 EEQRSQLEAEVQSLAQQNKDLEQQGlqrVKQLETKIGELESQ 1253
Cdd:pfam01576 944 ERQNKELKAKLQEMEGTVKSKFKSS---IAALEAKIAQLEEQ 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1016-1489 |
5.80e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 5.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1016 QADDKLRELELAVSAERRMMAERDELfhafERRLESAEQRLQVQDKRCARMLGKLE-GREEMDDLLERIKAGAAGVAKKK 1094
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEEL----EAELEELEAELEELEAELAELEAELEeLRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1095 TAGQDIAGLLSSLETHIGDLELELARANAQLPDTprdsvarsdvsatptvyHAELEASKQEVQRWKAEAERLEASLKS-- 1172
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAEL-----------------EEELEELEEELEELEEELEEAEEELEEae 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1173 QTMKEEEAKVSTDEHRRLHALEVEMRALSEKNEASKRQAEE--QRSQLEAEVQSLAQQNKDLEQQGLQRVKQLETKIGEL 1250
Cdd:COG1196 358 AELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELaaQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1251 ESQNRELEKQLSNVSNHAS---------------------------NPASPATSPD--TLPVRAVNTTSPRSATFPLPNK 1301
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEeeeallellaelleeaalleaalaellEELAEAAARLllLLEAEADYEGFLEGVKAALLLA 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1302 GVGNLIDRFGGGRKVSSEFRAEDSPAMTQAwmhSIENLRAMLPDLSAAAKGSADLNALRDAFQTCSTVSPSLTAVKSPSS 1381
Cdd:COG1196 518 GLRGLAGAVAVLIGVEAAYEAALEAALAAA---LQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALAR 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1382 ARI---PLGAADLQAELEATAERIRSTL------------AISRTVIDLALVSEVDKENRAQPQSGDKKEATVQAQADAL 1446
Cdd:COG1196 595 GAIgaaVDLVASDLREADARYYVLGDTLlgrtlvaarleaALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAAL 674
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 388856237 1447 SSQQALLTRITSLTAKVKEQADREKHLKVELAEVRGELEEARA 1489
Cdd:COG1196 675 LEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERL 717
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
871-1125 |
5.94e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.47 E-value: 5.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 871 QDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQtSEEHKRNAKDVQGETARqltqgsqdLASLRTE 950
Cdd:COG4913 606 FDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQR-LAEYSWDEIDVASAERE--------IAELEAE 676
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 951 LESSTAAKVAATTLAsdraKAIAELEVLLKQVCSELGAEKQARMKAEEQVAATQEQVLDSRSRADQADDKLRELELAVSA 1030
Cdd:COG4913 677 LERLDASSDDLAALE----EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLE 752
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1031 ERRMMAERDELFHAFERRLESAEQRLQVQDKRCARMLGK-------------------LEGREEMDDLLERIKA------ 1085
Cdd:COG4913 753 ERFAAALGDAVERELRENLEERIDALRARLNRAEEELERamrafnrewpaetadldadLESLPEYLALLDRLEEdglpey 832
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 388856237 1086 -GAAGVAKKKTAGQDIAGLLSSLETHIGDLELELARANAQL 1125
Cdd:COG4913 833 eERFKELLNENSIEFVADLLSKLRRAIREIKERIDPLNDSL 873
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
903-1260 |
1.30e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 59.78 E-value: 1.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 903 DEAKTLQLRAEAAEQTSEEHKRNAKDVQgETARQLTQGSQDLASLRTELESSTAAKVAAttlasDRAKAIAELEVLLKQV 982
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELE-ELEEELEELEAELEELREELEKLEKLLQLL-----PLYQELEALEAELAEL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 983 CSELgAEKQARMKAEEQVAATQEQVLDSRSRA-DQADDKLRELELAVSAERRMMAERDELFHAFERRLESAEQRLQVQDK 1061
Cdd:COG4717 145 PERL-EELEERLEELRELEEELEELEAELAELqEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1062 RCARMLGKLEGREEMDDLLERIKAG-------------AAGVAKKKTAGQDIAGLLSSLETHIGDLELELARANAQLP-- 1126
Cdd:COG4717 224 ELEEELEQLENELEAAALEERLKEArlllliaaallalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGke 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1127 ------DTPRDSVARSDVSATPTVYHAELEASK----------QEVQRWKAEAERLEASLKSQTMKEE------EAKVST 1184
Cdd:COG4717 304 aeelqaLPALEELEEEELEELLAALGLPPDLSPeellelldriEELQELLREAEELEEELQLEELEQEiaallaEAGVED 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1185 DE--------HRRLHALEVEMRALSE-----KNEASKRQAEEQRSQLEAEVQSLAQQNKDLEQQglqrVKQLETKIGELE 1251
Cdd:COG4717 384 EEelraaleqAEEYQELKEELEELEEqleelLGELEELLEALDEEELEEELEELEEELEELEEE----LEELREELAELE 459
|
....*....
gi 388856237 1252 SQNRELEKQ 1260
Cdd:COG4717 460 AELEQLEED 468
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
817-1259 |
1.92e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 1.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 817 RERSRAVEELRTLREQMNRFEesacqaqaravqAAIADVEQRMQRqLEQERsrdqdkedalvnAKAEvmagqralsdlqa 896
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLD------------LIIDEKRQQLER-LRRER------------EKAE------------- 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 897 rlaaaqdEAKTLQLRAEAAEQTSEEHKRNAKDvqgetaRQLTQGSQDLASLRTELESSTAakvaattLASDRAKAIAELE 976
Cdd:TIGR02169 212 -------RYQALLKEKREYEGYELLKEKEALE------RQKEAIERQLASLEEELEKLTE-------EISELEKRLEEIE 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 977 VLLKQVcselgaEKQARMKAEEQVAATQEQVLDSRSRADQADDKLRELElavsaerrmmaerdelfhafeRRLESAEQRL 1056
Cdd:TIGR02169 272 QLLEEL------NKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKE---------------------RELEDAEERL 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1057 QVQDKRcarmLGKLegREEMDDLLERIKAGAAGVAKKKTAGQDIAGLLSSLETHIGDLELELARANAQLPDtprdsvars 1136
Cdd:TIGR02169 325 AKLEAE----IDKL--LAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD--------- 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1137 dvsatptvYHAELEASKQEVQRWKAEAERLEASLKSQTMKEEEAKVS-TDEHRRLHALEVEMRALSEKNEASKRQAEEQR 1215
Cdd:TIGR02169 390 --------YREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAiAGIEAKINELEEEKEDKALEIKKQEWKLEQLA 461
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 388856237 1216 SQLEAEVQSLAQQNKDLEQqglqrvkqLETKIGELEsqnRELEK 1259
Cdd:TIGR02169 462 ADLSKYEQELYDLKEEYDR--------VEKELSKLQ---RELAE 494
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
764-1227 |
2.55e-08 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 59.20 E-value: 2.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 764 ASAPEKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESsnrlTQQLE--EQYRErsrAVEELRT-LREQMNRFEESA 840
Cdd:COG3096 302 AEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQTA----LRQQEkiERYQE---DLEELTErLEEQEEVVEEAA 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 841 cqaqaravqaaiadvEQRMQRQLEQERSRDQDKEdalvnAKAEVMAGQRALSDLQARLAAAQDEAKTLQlRAEAAEQTSE 920
Cdd:COG3096 375 ---------------EQLAEAEARLEAAEEEVDS-----LKSQLADYQQALDVQQTRAIQYQQAVQALE-KARALCGLPD 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 921 EHKRNAKDVQGETARQLTQGSQDLASLRTELESSTAAKvaattlasdrakaiAELEVLLKQVCSELGAEkqarmkaeeqv 1000
Cdd:COG3096 434 LTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAAR--------------RQFEKAYELVCKIAGEV----------- 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1001 aatqeqvldSRSradQADDKLRELeLAVSAERRMMAERDElfhAFERRLESAEQRLQVQDkrcarmlgklEGREEMDDLL 1080
Cdd:COG3096 489 ---------ERS---QAWQTAREL-LRRYRSQQALAQRLQ---QLRAQLAELEQRLRQQQ----------NAERLLEEFC 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1081 ERIkagaagvAKKKTAGQDIAGLLSSLETHIGDLELELARANAQLpdtprdsvarsdvsatpTVYHAELEASKQEVQR-- 1158
Cdd:COG3096 543 QRI-------GQQLDAAEELEELLAELEAQLEELEEQAAEAVEQR-----------------SELRQQLEQLRARIKEla 598
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 388856237 1159 -----WKAEAERLEAsLKSQTMKEEEAKVSTDEHRRlHALEVEMRAlseknEASKRQAEEQRSQLEAEVQSLAQ 1227
Cdd:COG3096 599 arapaWLAAQDALER-LREQSGEALADSQEVTAAMQ-QLLEREREA-----TVERDELAARKQALESQIERLSQ 665
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
773-1241 |
2.69e-08 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 59.07 E-value: 2.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 773 LGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMnrfeesacqaqaravqaai 852
Cdd:pfam10174 329 LKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDML------------------- 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 853 aDVEQR----MQRQLE--QERSRDQDKEdaLVNAKAEVMAGQRALSDLQARLAAAQDeakTLQLRAEAAEQTSEEHKRNA 926
Cdd:pfam10174 390 -DVKERkinvLQKKIEnlQEQLRDKDKQ--LAGLKERVKSLQTDSSNTDTALTTLEE---ALSEKERIIERLKEQRERED 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 927 KDVQGETA---RQLTQGSQDLASLRTELESSTAAKVAATTLASDRAKAIAELEVLLKQVCSELGAEKQARMKAEEQVAAT 1003
Cdd:pfam10174 464 RERLEELEslkKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKA 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1004 QEQVLDSRSRADQAdDKLRELELAVSAER----RMMAERDELFHAferrLESAEQRLQVQDKRCArmlgklegreEMDDL 1079
Cdd:pfam10174 544 HNAEEAVRTNPEIN-DRIRLLEQEVARYKeesgKAQAEVERLLGI----LREVENEKNDKDKKIA----------ELESL 608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1080 LER-IKAGAAGVAKKKTAGQdiagllssLETHIGDLELELARanaQLPDTPRDSVARSDVSATptvyHAELEASKQEVqr 1158
Cdd:pfam10174 609 TLRqMKEQNKKVANIKHGQQ--------EMKKKGAQLLEEAR---RREDNLADNSQQLQLEEL----MGALEKTRQEL-- 671
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1159 wkaEAERLEASLKSQTMKEEEAKVSTDEHRRLHALE--VEMR------ALSEKN---------EASKRQAEEQRSQLEAE 1221
Cdd:pfam10174 672 ---DATKARLSSTQQSLAEKDGHLTNLRAERRKQLEeiLEMKqeallaAISEKDaniallelsSSKKKKTQEEVMALKRE 748
|
490 500
....*....|....*....|
gi 388856237 1222 VQSLAQQnkdLEQQGLQRVK 1241
Cdd:pfam10174 749 KDRLVHQ---LKQQTQNRMK 765
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
894-1268 |
3.58e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 58.83 E-value: 3.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 894 LQARLAAAQDEAKTLQLRAEAAEQTSEEHKRNAKDVQGETARQLTQGSQDLASLRTELESSTAAKVAATTLASDRAKaIA 973
Cdd:TIGR00618 192 LHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRAR-IE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 974 ELEVLLKQVcsELGAEKQARMKAEEQVAATQEQVLDSRSRADQADDKL--RELELAVSAERRMMAERDELFHAFERRLEs 1051
Cdd:TIGR00618 271 ELRAQEAVL--EETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELqsKMRSRAKLLMKRAAHVKQQSSIEEQRRLL- 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1052 aeQRLQVQDKRCARM----LGKLEGREEMDDLLERIKAgaagVAKKKTAGQDIAGLLSSLethigdLELELARANAQLPD 1127
Cdd:TIGR00618 348 --QTLHSQEIHIRDAhevaTSIREISCQQHTLTQHIHT----LQQQKTTLTQKLQSLCKE------LDILQREQATIDTR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1128 TPRDSVARSDVSATPTVYHAELEASK----------QEVQRWKAEAERLEASLKSQTMKEEEAKVSTDEHRRLHALEVEM 1197
Cdd:TIGR00618 416 TSAFRDLQGQLAHAKKQQELQQRYAElcaaaitctaQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLAR 495
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 388856237 1198 RALSEKNEaskRQAEEQRSQLEAEVQSL--AQQNKDLEQQGLQRVKQLETKIGELESQNRELEKQLSNVSNHA 1268
Cdd:TIGR00618 496 LLELQEEP---CPLCGSCIHPNPARQDIdnPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQM 565
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
861-1261 |
1.59e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.31 E-value: 1.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 861 RQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTL--QLRAEAAEQTSEEHKRNAKDVQGEtARQLT 938
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLekLLQLLPLYQELEALEAELAELPER-LEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 939 QGSQDLASLRTELESstaakvaattlasdRAKAIAELEVLLKQVCSELGAEKQARMK-AEEQVAATQEQVLDSRSRADQA 1017
Cdd:COG4717 153 ERLEELRELEEELEE--------------LEAELAELQEELEELLEQLSLATEEELQdLAEELEELQQRLAELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1018 DDKLRELELAVSAERRMMAERDElfhafERRLESAEQRLQVQDKRCArmlgkLEGREEMDDLLERIKAGAAGVakkktag 1097
Cdd:COG4717 219 QEELEELEEELEQLENELEAAAL-----EERLKEARLLLLIAAALLA-----LLGLGGSLLSLILTIAGVLFL------- 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1098 qdIAGLLSSLETHIGDLELELARANAQLPDTP-RDSVARSDVSATPTVYHAELEASKQEVQRWKAEAERLEASLKSQTMK 1176
Cdd:COG4717 282 --VLGLLALLFLLLAREKASLGKEAEELQALPaLEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1177 EEEAKVSTDEHRRLHAL-------EVEMRALSEKNEAsKRQAEEQRSQLEAEVQSLAQQNKDLEQQG-----LQRVKQLE 1244
Cdd:COG4717 360 EEELQLEELEQEIAALLaeagvedEEELRAALEQAEE-YQELKEELEELEEQLEELLGELEELLEALdeeelEEELEELE 438
|
410
....*....|....*..
gi 388856237 1245 TKIGELESQNRELEKQL 1261
Cdd:COG4717 439 EELEELEEELEELREEL 455
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
768-1258 |
2.63e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 55.75 E-value: 2.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 768 EKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMN--RFEESACQAQA 845
Cdd:TIGR00618 403 DILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKerEQQLQTKEQIH 482
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 846 RAVQAAIADVEQRMQRQLEQERSrdqdkedalvnakaevMAGQraLSDLQARLAAAqDEAKTLQLRAEAAEQTSEEHKRN 925
Cdd:TIGR00618 483 LQETRKKAVVLARLLELQEEPCP----------------LCGS--CIHPNPARQDI-DNPGPLTRRMQRGEQTYAQLETS 543
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 926 AKDVQGETARQLTQGSQDLASLRTELESSTAAKVAATTLASDRAKAIAELEVLLKQVCSELGAEKQARMKAEEQVAATQE 1005
Cdd:TIGR00618 544 EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQP 623
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1006 QVLDSRSRAD--QADDKLRELELAVSAERRMMAERDELFHAFERRLESAEQRLQVQDKrcarmlgklegREEMDDLLERI 1083
Cdd:TIGR00618 624 EQDLQDVRLHlqQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLA-----------LQKMQSEKEQL 692
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1084 KAGAAGVAKKKTagqdiagLLSSLETHIGDL-----ELELARANAQLPDTPRDSVarsdvsatptvyHAELEASKQEVQR 1158
Cdd:TIGR00618 693 TYWKEMLAQCQT-------LLRELETHIEEYdrefnEIENASSSLGSDLAAREDA------------LNQSLKELMHQAR 753
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1159 WKAEAERLEASLKSQ--TMKE----EEAKVSTDEHRRLHALEVEMRALSEKNEASKRQAEEQRSQLEAEVQSLAQQnkdl 1232
Cdd:TIGR00618 754 TVLKARTEAHFNNNEevTAALqtgaELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQE---- 829
|
490 500
....*....|....*....|....*.
gi 388856237 1233 EQQGLQRVKQLETKIGELESQNRELE 1258
Cdd:TIGR00618 830 EEQFLSRLEEKSATLGEITHQLLKYE 855
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
769-1257 |
2.65e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 55.82 E-value: 2.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 769 KLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMNRFEESACqaqarav 848
Cdd:TIGR00606 399 VIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSD------- 471
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 849 qaaiaDVEQRMQRQLEQERSRDQDKEDALVNA-KAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQTsEEHKRNAK 927
Cdd:TIGR00606 472 -----RILELDQELRKAERELSKAEKNSLTETlKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQM-EMLTKDKM 545
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 928 DVQGETARQLTQGSQDLASLRTELESStaaKVAATTLASDRaKAIAELEVLLKQVCSELGAEKQAR-------MKAEEQV 1000
Cdd:TIGR00606 546 DKDEQIRKIKSRHSDELTSLLGYFPNK---KQLEDWLHSKS-KEINQTRDRLAKLNKELASLEQNKnhinnelESKEEQL 621
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1001 AATQEQVLDSRSRADQADD--KLRELELAVSAERRMMAERDELFHAF--------------------------------- 1045
Cdd:TIGR00606 622 SSYEDKLFDVCGSQDEESDleRLKEEIEKSSKQRAMLAGATAVYSQFitqltdenqsccpvcqrvfqteaelqefisdlq 701
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1046 ------ERRLESAEQRLQVQDKRCARMLGKLEGREEMDDLLER-IKAGAAGVAKKKTAGQDIAGLLSSLETHIGDLELEL 1118
Cdd:TIGR00606 702 sklrlaPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKeIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEE 781
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1119 ARANAQLPDT---PRDSVARSDVSATPTVYHAELEAS--KQEVQRWKAEAERLEASLKSQTMK-EEEAKVSTDEHRRLHA 1192
Cdd:TIGR00606 782 ESAKVCLTDVtimERFQMELKDVERKIAQQAAKLQGSdlDRTVQQVNQEKQEKQHELDTVVSKiELNRKLIQDQQEQIQH 861
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 388856237 1193 LEVEMRAL-SEK-----NEASKRQAEEQRSQLEAEVQSLAQQNKDLEQQglqrVKQLETKIGELESQNREL 1257
Cdd:TIGR00606 862 LKSKTNELkSEKlqigtNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQ----DSPLETFLEKDQQEKEEL 928
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
869-1274 |
3.34e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 55.73 E-value: 3.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 869 RDQDKEDALvNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAE---QTSEEH---KRNAKDVQGETARQltqgSQ 942
Cdd:COG3096 280 RRELSERAL-ELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEqdyQAASDHlnlVQTALRQQEKIERY----QE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 943 DLASLRTELESSTAAkVAATTLASDRAKA---IAELEVllKQVCSELGAEKQARmkAEEQVAATQEQvldsrsRADQADD 1019
Cdd:COG3096 355 DLEELTERLEEQEEV-VEEAAEQLAEAEArleAAEEEV--DSLKSQLADYQQAL--DVQQTRAIQYQ------QAVQALE 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1020 KLREL----ELAV-SAERRMMAERDELFHAFERRLEsAEQRLQVQDKRCARMLGKLEGREEMDDLLERIKAGAAGVAKKK 1094
Cdd:COG3096 424 KARALcglpDLTPeNAEDYLAAFRAKEQQATEEVLE-LEQKLSVADAARRQFEKAYELVCKIAGEVERSQAWQTARELLR 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1095 TAG--QDIAGLLSSLETHIGDLELELAR---ANAQLPDTPRDSVARSDVSATPTVYHAELEAskqevqrwkaEAERLEAS 1169
Cdd:COG3096 503 RYRsqQALAQRLQQLRAQLAELEQRLRQqqnAERLLEEFCQRIGQQLDAAEELEELLAELEA----------QLEELEEQ 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1170 LksqtmkEEEAKVSTDEHRRLHALEVEMRALSEKnEASKRQAEEQRSQLEAEV-QSLA--QQNKDLEQQGLQRVKQLETK 1246
Cdd:COG3096 573 A------AEAVEQRSELRQQLEQLRARIKELAAR-APAWLAAQDALERLREQSgEALAdsQEVTAAMQQLLEREREATVE 645
|
410 420
....*....|....*....|....*...
gi 388856237 1247 IGELESQNRELEKQLSNVSnHASNPASP 1274
Cdd:COG3096 646 RDELAARKQALESQIERLS-QPGGAEDP 672
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
772-1140 |
4.17e-07 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 54.14 E-value: 4.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 772 RLGEEVERKR-----------EMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMnrfeesa 840
Cdd:COG4372 3 RLGEKVGKARlslfglrpktgILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSEL------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 841 cqaqaravqaaiadveQRMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQTSE 920
Cdd:COG4372 76 ----------------EQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIA 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 921 EHKRNAKdvqgETARQLTQGSQDLASLRTELEsstaaKVAATTLASDRAKAIAELEVLLKQvcSELGAEKQARMKAEEQV 1000
Cdd:COG4372 140 ELQSEIA----EREEELKELEEQLESLQEELA-----ALEQELQALSEAEAEQALDELLKE--ANRNAEKEEELAEAEKL 208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1001 AATQEQVLDSRSRADQADDKLRELELAVSAERRMMAERDELFHAFERRLESAEQRLQVQDKRCARMLGKLEGREEMDDLL 1080
Cdd:COG4372 209 IESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEAL 288
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 388856237 1081 ERIKAGAAGVAKK--KTAGQDIAGLLSSLETHIGDLELELARANAQLPDTPRDSVARSDVSA 1140
Cdd:COG4372 289 EEAALELKLLALLlnLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGL 350
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
768-1085 |
4.30e-07 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 54.15 E-value: 4.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 768 EKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNR--------LTQQLEEQYRERSRAVEELRTLREQMNRFEEs 839
Cdd:pfam13868 30 EKKRIKAEEKEEERRLDEMMEEERERALEEEEEKEEERKEerkryrqeLEEQIEEREQKRQEEYEEKLQEREQMDEIVE- 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 840 acqaqaravQAAIADVEQRMQRQLEQERSR-DQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQt 918
Cdd:pfam13868 109 ---------RIQEEDQAEAEEKLEKQRQLReEIDEFNEEQAEWKELEKEEEREEDERILEYLKEKAEREEEREAEREEI- 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 919 SEEHKRNAKDVQGETARQLTQgsqdlaslRTELESSTAAKVAATTLASDRAKAIAElevllkqvcselgAEKQARMKAEE 998
Cdd:pfam13868 179 EEEKEREIARLRAQQEKAQDE--------KAERDELRAKLYQEEQERKERQKEREE-------------AEKKARQRQEL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 999 QVAATQEQVLDSRSRADQADDKLRELELAVsaERRMMAERDELFHAFERRLE----SAEQRLQVQDKRCARMLGKLEGRE 1074
Cdd:pfam13868 238 QQAREEQIELKERRLAEEAEREEEEFERML--RKQAEDEEIEQEEAEKRRMKrlehRRELEKQIEEREEQRAAEREEELE 315
|
330
....*....|.
gi 388856237 1075 EMDDLLERIKA 1085
Cdd:pfam13868 316 EGERLREEEAE 326
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
770-1261 |
4.32e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.03 E-value: 4.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 770 LRRLGEEVERKREMVRKLESDLTSARdaaKRREESSNRLTQQLEEQYRERSRAVE---ELRTLREQMNRFEESacqaqar 846
Cdd:TIGR04523 105 LSKINSEIKNDKEQKNKLEVELNKLE---KQKKENKKNIDKFLTEIKKKEKELEKlnnKYNDLKKQKEELENE------- 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 847 avqaaiadveqrmQRQLEQERsrdQDKEDALVNAKAEVMAGQRALSDLQARLaaaqDEAKTLQLRAEAAEQTSEEHKRNA 926
Cdd:TIGR04523 175 -------------LNLLEKEK---LNIQKNIDKIKNKLLKLELLLSNLKKKI----QKNKSLESQISELKKQNNQLKDNI 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 927 KDVQGE----------TARQLTQGSQDLASLRTELEsstaakvaATTLASDRAKA-IAELEVLLKQVCSELGA---EKQA 992
Cdd:TIGR04523 235 EKKQQEinektteisnTQTQLNQLKDEQNKIKKQLS--------EKQKELEQNNKkIKELEKQLNQLKSEISDlnnQKEQ 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 993 RMKAE--EQVAATQEQVLDSRSRADQADDKLRELELAVSAERRmmaERDELfhaferrlESAEQRLQVQDKRCARMLGKL 1070
Cdd:TIGR04523 307 DWNKElkSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKK---ELTNS--------ESENSEKQRELEEKQNEIEKL 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1071 EgrEEMDDLLERIKagaagvakkktagqdiagllsSLETHIGDLELELARA---NAQLpdtprDSVARSDVSatptvyha 1147
Cdd:TIGR04523 376 K--KENQSYKQEIK---------------------NLESQINDLESKIQNQeklNQQK-----DEQIKKLQQ-------- 419
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1148 ELEASKQEVQRWKAEAERLEASLKSQTMKEEEAKVSTDEHRR--------LHALEVEMRALSEKNEASKRQAEEQRSQLE 1219
Cdd:TIGR04523 420 EKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNtresletqLKVLSRSINKIKQNLEQKQKELKSKEKELK 499
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 388856237 1220 ---AEVQSLAQQNKDLEQQ---GLQRVKQLETKIGELESQNRELEKQL 1261
Cdd:TIGR04523 500 klnEEKKELEEKVKDLTKKissLKEKIEKLESEKKEKESKISDLEDEL 547
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
768-1031 |
7.63e-07 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 53.37 E-value: 7.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 768 EKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMNRFEESAcqaqara 847
Cdd:COG4372 45 EELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEEL------- 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 848 vqaaiadveQRMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQTSEEHKrnAK 927
Cdd:COG4372 118 ---------EELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQA--LD 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 928 DVQGETARQLTQGSQDLASLRTELESSTAAKVAATTLASDRAKAIAELEVLLKQVCSELGAEKQARMKAEEQVAATQEQV 1007
Cdd:COG4372 187 ELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELA 266
|
250 260
....*....|....*....|....
gi 388856237 1008 LDSRSRADQADDKLRELELAVSAE 1031
Cdd:COG4372 267 ILVEKDTEEEELEIAALELEALEE 290
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1046-1270 |
8.39e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 8.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1046 ERRLESAEQRLQ-VQDKRC--ARMLGKLEgRE--------EMDDLLERIKAGAAgVAKKKTAGQDIAGL---LSSLETHI 1111
Cdd:COG1196 178 ERKLEATEENLErLEDILGelERQLEPLE-RQaekaeryrELKEELKELEAELL-LLKLRELEAELEELeaeLEELEAEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1112 GDLELELARANAQLpdtprdSVARSDVSATptvyHAELEASKQEVQRWKAEAERLEASLKSQTMKEEEAKvstDEHRRLH 1191
Cdd:COG1196 256 EELEAELAELEAEL------EELRLELEEL----ELELEEAQAEEYELLAELARLEQDIARLEERRRELE---ERLEELE 322
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 388856237 1192 ALEVEMRALSEKNEASKRQAEEQRSQLEAEVQSLAQQNKDLEQQGLQRVKQLETKIGELESQNRELEKQLSNVSNHASN 1270
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
748-1181 |
1.17e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.97 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 748 RIESDLSAISGfsflDASAPEKLRRLGEEVERKREMVRKLESDLTsardAAKRREESSNRLTQQLEEQYRERSRAVE--- 824
Cdd:pfam15921 445 QMERQMAAIQG----KNESLEKVSSLTAQLESTKEMLRKVVEELT----AKKMTLESSERTVSDLTASLQEKERAIEatn 516
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 825 -ELRTLReqmnrfeesacqaqaravqaaiadveQRMQRQLeQERSRDQDKEDALVNAKAEVMAgqralsdLQARLAAAQD 903
Cdd:pfam15921 517 aEITKLR--------------------------SRVDLKL-QELQHLKNEGDHLRNVQTECEA-------LKLQMAEKDK 562
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 904 EAKTLQLRAEAAEQTSEEHKRNAKDVQGETArqltQGSQDLASLRTELESSTAAKVAATTLASDRAKAIAELEvLLKQVC 983
Cdd:pfam15921 563 VIEILRQQIENMTQLVGQHGRTAGAMQVEKA----QLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLE-LEKVKL 637
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 984 SELGAEkqaRMKAEEQVAATQEQVLDS-RSRADQADDKLRELELAVSAERRMMAERDELFHAFERRLESAEQRLQvqdkR 1062
Cdd:pfam15921 638 VNAGSE---RLRAVKDIKQERDQLLNEvKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELE----Q 710
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1063 CARMLGKLEGREEmddllERIKAgAAGVAKKKTAGQdiaGLLSSLETHIGDLELELARANAQ----LPDTPRDSVARSDV 1138
Cdd:pfam15921 711 TRNTLKSMEGSDG-----HAMKV-AMGMQKQITAKR---GQIDALQSKIQFLEEAMTNANKEkhflKEEKNKLSQELSTV 781
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 388856237 1139 SATPTVYHAELEASKQEVQRWKAEAERLEASLKSQTMKEEEAK 1181
Cdd:pfam15921 782 ATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQ 824
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1005-1252 |
1.24e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1005 EQVLDSRSRADQADDKLRELELAVSAERRMMAERDELFH-----AFERRLESAEQRLQVQDkRCARMLGKLEGREEMDDL 1079
Cdd:COG4913 215 EYMLEEPDTFEAADALVEHFDDLERAHEALEDAREQIELlepirELAERYAAARERLAELE-YLRAALRLWFAQRRLELL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1080 LERIKAGAAGVAKKKTAgqdiaglLSSLETHIGDLELELARANAQLPDTPRDSVARsdvsatptvYHAELEASKQEVQRW 1159
Cdd:COG4913 294 EAELEELRAELARLEAE-------LERLEARLDALREELDELEAQIRGNGGDRLEQ---------LEREIERLERELEER 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1160 KAEAERLEASLKSQTMKEEE-----AKVSTDEHRRLHALEVEMRALSE---KNEASKRQAEEQRSQLEAEVQSLAQQNKD 1231
Cdd:COG4913 358 ERRRARLEALLAALGLPLPAsaeefAALRAEAAALLEALEEELEALEEalaEAEAALRDLRRELRELEAEIASLERRKSN 437
|
250 260
....*....|....*....|.
gi 388856237 1232 LEQQGLQRVKQLETKIGELES 1252
Cdd:COG4913 438 IPARLLALRDALAEALGLDEA 458
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
768-953 |
2.24e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.71 E-value: 2.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 768 EKLRRLGEEVERKREMVR--KLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMNRFEESACQAQA 845
Cdd:COG3206 182 EQLPELRKELEEAEAALEefRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQ 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 846 RAVQAAIADVEQRMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQAR-LAAAQDEAKTLQLRAEAAEQTSEEHKR 924
Cdd:COG3206 262 SPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRiLASLEAELEALQAREASLQAQLAQLEA 341
|
170 180
....*....|....*....|....*....
gi 388856237 925 NAKDVQgETARQLTQGSQDLASLRTELES 953
Cdd:COG3206 342 RLAELP-ELEAELRRLEREVEVARELYES 369
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
773-1262 |
3.25e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.43 E-value: 3.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 773 LGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLE---EQYRERS-----------RAVEELRT-LREQMNRFE 837
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEiiqEQARNQNsmymrqlsdleSTVSQLRSeLREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 838 ESACQAQARAVQAAIADVEQRMQR-QLEQERSRDQDKEdalvnakaevmagQRALSDLQAR---LAAAQDEAKTLQLRAE 913
Cdd:pfam15921 342 DKIEELEKQLVLANSELTEARTERdQFSQESGNLDDQL-------------QKLLADLHKRekeLSLEKEQNKRLWDRDT 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 914 AAEQTSEEHKRNAKDVQGETARQltqgSQDLASLRTELESSTAAKVAATTLASDRAKAIAELEV-------LLKQVCSEL 986
Cdd:pfam15921 409 GNSITIDHLRRELDDRNMEVQRL----EALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAqlestkeMLRKVVEEL 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 987 GAEKQARMKAEEQVA--------------ATQEQVLDSRSRAD----------QADDKLRELELAVSAERRMMAERDELF 1042
Cdd:pfam15921 485 TAKKMTLESSERTVSdltaslqekeraieATNAEITKLRSRVDlklqelqhlkNEGDHLRNVQTECEALKLQMAEKDKVI 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1043 HAFERRLESAEQRLQVQDKRCARML-GKLEGREEMDDllERIKAGAAGVAKKKTAGQdiaglLSSLETHIGDLELElara 1121
Cdd:pfam15921 565 EILRQQIENMTQLVGQHGRTAGAMQvEKAQLEKEIND--RRLELQEFKILKDKKDAK-----IRELEARVSDLELE---- 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1122 naqlpdtprdsvarsdvsatptvyhaeleaskqEVQRWKAEAERLEASlksQTMKEEEAKVSTDehrrLHALEVEMRALS 1201
Cdd:pfam15921 634 ---------------------------------KVKLVNAGSERLRAV---KDIKQERDQLLNE----VKTSRNELNSLS 673
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 388856237 1202 EKNEASKRQAEEQRSQLEAEVQSLAQQNKDLE---QQGLQRVKQLETKIGELESQNRELEKQLS 1262
Cdd:pfam15921 674 EDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQselEQTRNTLKSMEGSDGHAMKVAMGMQKQIT 737
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
775-982 |
3.65e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.15 E-value: 3.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 775 EEVERKREmvrKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMNRFeesacqaqaravqaaiAD 854
Cdd:pfam12128 600 EELRERLD---KAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRL----------------FD 660
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 855 VEQRMQRQLEQERSRDQDKEDALVNakaEVMAGQRAL-SDLQARLAAAQDEAKTLQLRAEAAEQTSEEHKRNAKD--VQG 931
Cdd:pfam12128 661 EKQSEKDKKNKALAERKDSANERLN---SLEAQLKQLdKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLAllKAA 737
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 388856237 932 ETARQlTQGSQDLASLRTELESSTAAKVAATTLASDRAKAIAELEVLLKQV 982
Cdd:pfam12128 738 IAARR-SGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERI 787
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1073-1315 |
3.71e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 3.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1073 REEMDDLLERIKAGAAGVAKKKTAGQDIAGLLSSLETHIGDLELELARANAQLpdtprdSVARSDVSATptvyHAELEAS 1152
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQEL------AALEAELAEL----EKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1153 KQEVQRWKAE-AERLEASLKSQTMKEEEAKVSTDEH----RRLHALE----------VEMRALSEKNEASKRQAEEQRSQ 1217
Cdd:COG4942 96 RAELEAQKEElAELLRALYRLGRQPPLALLLSPEDFldavRRLQYLKylaparreqaEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1218 LEAEVQSLAQQNKDLEQQGLQR---VKQLETKIGELESQNRELEKQLSNVSNHASNPASPATSPDTLPVRAvnTTSPRSA 1294
Cdd:COG4942 176 LEALLAELEEERAALEALKAERqklLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA--GFAALKG 253
|
250 260
....*....|....*....|.
gi 388856237 1295 TFPLPNKGVgnLIDRFGGGRK 1315
Cdd:COG4942 254 KLPWPVSGR--VVRRFGERDG 272
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
765-985 |
4.04e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 4.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 765 SAPEKLRRLGEEVERKREMVRKLES---DLTSARDAAKRREESSNRLTQQLEEQYRERSrAVEELRTLREQMNRFEESac 841
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEErleALEAELDALQERREALQRLAEYSWDEIDVAS-AEREIAELEAELERLDAS-- 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 842 qaqaravqaaIADVEQrMQRQLEQERSRDQDKEDALVNAKAEVmagqralSDLQARLAAAQDEAKTLQLRAEAAEQTSEE 921
Cdd:COG4913 684 ----------SDDLAA-LEEQLEELEAELEELEEELDELKGEI-------GRLEKELEQAEEELDELQDRLEAAEDLARL 745
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 388856237 922 HKRnakdVQGETARQLTQGSQDLASLRTELESSTAAkvaattLASDRAKAIAELEVLLKQVCSE 985
Cdd:COG4913 746 ELR----ALLEERFAAALGDAVERELRENLEERIDA------LRARLNRAEEELERAMRAFNRE 799
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
768-1260 |
5.53e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.59 E-value: 5.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 768 EKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQY----------------------RERSRAVEE 825
Cdd:TIGR00606 248 DPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFqgtdeqlndlyhnhqrtvrekeRELVDCQRE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 826 LRTLREQMNRF-EESACQAQARAVQAAIADVEQRMQRQLEQER------------SRDQDKEDALVNAKAEVMAGQ---- 888
Cdd:TIGR00606 328 LEKLNKERRLLnQEKTELLVEQGRLQLQADRHQEHIRARDSLIqslatrleldgfERGPFSERQIKNFHTLVIERQedea 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 889 ----RALSDLQARLAAAQDEA-----------KTLQLRAEAAEQTSEEHKRNAKDVQgetarQLTQGSQDLASLRTEL-- 951
Cdd:TIGR00606 408 ktaaQLCADLQSKERLKQEQAdeirdekkglgRTIELKKEILEKKQEELKFVIKELQ-----QLEGSSDRILELDQELrk 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 952 ---ESSTAAKVAATTLASDRAKAIAELEV-LLKQVCSElgAEKQARmKAEEQVAATQEQVLdSRSRADqADDKLRELELA 1027
Cdd:TIGR00606 483 aerELSKAEKNSLTETLKKEVKSLQNEKAdLDRKLRKL--DQEMEQ-LNHHTTTRTQMEML-TKDKMD-KDEQIRKIKSR 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1028 VSAERRMMAERDELFHAFERRLESAEQRLQVQDKRCARMLGKLEGREEMDDLLERikagaagVAKKKTAGqdiaglLSSL 1107
Cdd:TIGR00606 558 HSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINN-------ELESKEEQ------LSSY 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1108 ETHI------GDLELELARANAQLPDTPRDsvaRSDVSATPTVYHAELEASKQEVQR--------WKAEAERLEASLKSQ 1173
Cdd:TIGR00606 625 EDKLfdvcgsQDEESDLERLKEEIEKSSKQ---RAMLAGATAVYSQFITQLTDENQSccpvcqrvFQTEAELQEFISDLQ 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1174 TM--------KEEEAKVSTDEHRR-------------LHALEVEMRALSEKNEASKRQAEEQRSQLEAE----------- 1221
Cdd:TIGR00606 702 SKlrlapdklKSTESELKKKEKRRdemlglapgrqsiIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQetllgtimpee 781
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 388856237 1222 ------------VQSLAQQNKDLEQQGLQRVKQLETKIGELESQNRELEKQ 1260
Cdd:TIGR00606 782 esakvcltdvtiMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQ 832
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
768-1227 |
6.00e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 51.50 E-value: 6.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 768 EKLRRLGEEVERKREMVRK----------LESDLTSARD-------------AAKRREESSNRLTQQLEEQYRERSRAVE 824
Cdd:PRK04863 297 TSRRQLAAEQYRLVEMARElaelneaesdLEQDYQAASDhlnlvqtalrqqeKIERYQADLEELEERLEEQNEVVEEADE 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 825 ELRTLREQMNRFEESACqaqaravqaaiadveqRMQRQLeqersrdqdkedalvnakAEVmagQRALsDLQARLAAAQDE 904
Cdd:PRK04863 377 QQEENEARAEAAEEEVD----------------ELKSQL------------------ADY---QQAL-DVQQTRAIQYQQ 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 905 AKTLQLRAEAAEQTSEEHKRNAKDVQGETARQLTQGSQDLASLRTELESSTAAKvaattlasdrakaiAELEVLLKQVCS 984
Cdd:PRK04863 419 AVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAH--------------SQFEQAYQLVRK 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 985 eLGAEKqarmkaeeqvaatqeqvldSRSRA-DQADDKLRELElavsaERRMMAERDElfhAFERRLESAEQRLQVQdKRC 1063
Cdd:PRK04863 485 -IAGEV-------------------SRSEAwDVARELLRRLR-----EQRHLAEQLQ---QLRMRLSELEQRLRQQ-QRA 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1064 ARMLGKLEGREEMDDLLErikagaagvakkktagQDIAGLLSSLETHIGDLELELARANAQlpdtprdsvaRSDVsatpt 1143
Cdd:PRK04863 536 ERLLAEFCKRLGKNLDDE----------------DELEQLQEELEARLESLSESVSEARER----------RMAL----- 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1144 vyHAELEASKQEVQR-------WKAEAERLEAsLKSQTMKEEEAKVSTDEHRRLHALEVemRALSEkneaSKRQAEEQRS 1216
Cdd:PRK04863 585 --RQQLEQLQARIQRlaarapaWLAAQDALAR-LREQSGEEFEDSQDVTEYMQQLLERE--RELTV----ERDELAARKQ 655
|
490
....*....|.
gi 388856237 1217 QLEAEVQSLAQ 1227
Cdd:PRK04863 656 ALDEEIERLSQ 666
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
808-1260 |
6.19e-06 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 51.28 E-value: 6.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 808 LTQQLEEQYRERSRAveelrtlreqmnRFEESACQAQARAVQAAIADVEQRMQRQLEQERSRDQDKEDALvNAKAEvmag 887
Cdd:pfam05557 14 LQNEKKQMELEHKRA------------RIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEAL-REQAE---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 888 qralsdlQARLAAAQDEAKTLQLR-AEAAEQTSEEHKRNAKDVQGETARQLTQGSQDLASLRTELESSTAAKVAATTLAS 966
Cdd:pfam05557 77 -------LNRLKKKYLEALNKKLNeKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKAS 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 967 DRAKAIAELEvllKQvCSELgAEKQARMKAEEQVAATQEQ----VLDSRSRADQADDKLRELE--LAVSAERRMMAERDE 1040
Cdd:pfam05557 150 EAEQLRQNLE---KQ-QSSL-AEAEQRIKELEFEIQSQEQdseiVKNSKSELARIPELEKELErlREHNKHLNENIENKL 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1041 LF----HAFERRLESAEQ------RLQVQDKRCARMLGKLEGREEM--------DDLLERIKA----GAAGVAKKKTAGQ 1098
Cdd:pfam05557 225 LLkeevEDLKRKLEREEKyreeaaTLELEKEKLEQELQSWVKLAQDtglnlrspEDLSRRIEQlqqrEIVLKEENSSLTS 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1099 DiaglLSSLETHIGDLELELARANAQLPDTprdsvarsdvsatpTVYHAELEASKQEVQRWKA----EAERLEASLKSQT 1174
Cdd:pfam05557 305 S----ARQLEKARRELEQELAQYLKKIEDL--------------NKKLKRHKALVRRLQRRVLlltkERDGYRAILESYD 366
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1175 MKEEEAKVSTDEHRRLHALE---VEMRALSEKNEASKRQAEE-------QRSQLEAEVQSLAQQNkDLEQQGLQR--VKQ 1242
Cdd:pfam05557 367 KELTMSNYSPQLLERIEEAEdmtQKMQAHNEEMEAQLSVAEEelggykqQAQTLERELQALRQQE-SLADPSYSKeeVDS 445
|
490
....*....|....*...
gi 388856237 1243 LETKIGELESQNRELEKQ 1260
Cdd:pfam05557 446 LRRKLETLELERQRLREQ 463
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
768-1030 |
7.14e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 7.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 768 EKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLE------EQYRERSRAVE-ELRTLREQMNRFEEsa 840
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEqlkeelKALREALDELRaELTLLNEEAANLRE-- 824
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 841 cqaqaravqaaiadVEQRMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKtlqlRAEAAEQTSE 920
Cdd:TIGR02168 825 --------------RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE----ALLNERASLE 886
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 921 EHKRNAKDVQGETARQLTQGSQDLASLRTELEsstaakvAATTLASDRAKAIAELEVLLKQVCSELGAEkqARMKAEEQV 1000
Cdd:TIGR02168 887 EALALLRSELEELSEELRELESKRSELRRELE-------ELREKLAQLELRLEGLEVRIDNLQERLSEE--YSLTLEEAE 957
|
250 260 270
....*....|....*....|....*....|
gi 388856237 1001 AATQEQVLDSrsraDQADDKLRELELAVSA 1030
Cdd:TIGR02168 958 ALENKIEDDE----EEARRRLKRLENKIKE 983
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
871-1047 |
7.85e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.15 E-value: 7.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 871 QDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQTSEEHKRNAKDVQGETAR---QLTQGS--QDLA 945
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKyeeQLGNVRnnKEYE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 946 SLRTELESStaakvaattlasdrAKAIAELEVLLKQVCSELGAEKQARMKAEEQVAATQEQVLDSRSRADQADDKLRELE 1025
Cdd:COG1579 93 ALQKEIESL--------------KRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAEL 158
|
170 180
....*....|....*....|....
gi 388856237 1026 LAVSAERRMMAER--DELFHAFER 1047
Cdd:COG1579 159 EELEAEREELAAKipPELLALYER 182
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
509-1057 |
9.35e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 9.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 509 RDDMLQRLLLDQARVDSQEygtmslEQVAEAKRDLEHIERKVQTLRTKL-KVEIKIRDAAVALRRAHRRTAASAHSPTSS 587
Cdd:COG1196 234 LRELEAELEELEAELEELE------AELEELEAELAELEAELEELRLELeELELELEEAQAEEYELLAELARLEQDIARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 588 VSvvvsptspglvplhRHSNDKFSSSSASTSSFAVRSRALSISASEAKSDEDVSIATAKVDKVANELIKWTERANSIRRR 667
Cdd:COG1196 308 EE--------------RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 668 LLEHQAATLSERVVHLESDRQVMEEKLPFLTTSTSFESLAPSSSASAVGINRYRDAGHHYQPSTDEpyvphgpndplRHN 747
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE-----------EEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 748 RIESDLSAISGfsflDASAPEKLRRLGEEVERKREMVRKLESDLTSARDAAKRREEssnrLTQQLEEQYRERSRAVEELR 827
Cdd:COG1196 443 ALEEAAEEEAE----LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL----LLLEAEADYEGFLEGVKAAL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 828 TLREQM-------------NRFEESACQAQARAVQAAIADVEQRMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDL 894
Cdd:COG1196 515 LLAGLRglagavavligveAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALAR 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 895 QARLAAA--------QDEAKTLQLRAEAAEQTSEEHKRNAKDVQGETARQLTQGSQDLASLRTELESSTAAKVAATTLAS 966
Cdd:COG1196 595 GAIGAAVdlvasdlrEADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAAL 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 967 DRAKAIAELEVLLKQVcSELGAEKQARMKAEEQVAATQEQVLDSRSRADQADDKLRELELAVSAERRMMAERDELFHAF- 1045
Cdd:COG1196 675 LEAEAELEELAERLAE-EELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEAl 753
|
570 580
....*....|....*....|....
gi 388856237 1046 ------------ERRLESAEQRLQ 1057
Cdd:COG1196 754 eelpeppdleelERELERLEREIE 777
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
959-1242 |
1.07e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 959 VAATTLASDRAKAIAELEVLLKQVCSELGAEKQARMKAEEQVAATQEQVLDSRSRADQADDKLRELELAVSAERRMMAEr 1038
Cdd:COG4942 9 LLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1039 delfhaFERRLESAEQRLQVQDKRCARMLGKLEGREEMDDLLerIKAGAAGVAKKKTAGQDIAGLLSSLETHIGDLELEL 1118
Cdd:COG4942 88 ------LEKEIAELRAELEAQKEELAELLRALYRLGRQPPLA--LLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1119 aranaqlpdtprdsvarsdvsatptvyhAELEASKQEVQRWKAEAERLEASLKSQtmkeeeakvstdeHRRLHALEVEMR 1198
Cdd:COG4942 160 ----------------------------AELAALRAELEAERAELEALLAELEEE-------------RAALEALKAERQ 198
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 388856237 1199 ALSEKNEASKRQAEEQRSQLEAEVQSLAQQNKDLEQQGLQRVKQ 1242
Cdd:COG4942 199 KLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
796-1083 |
1.20e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 796 DAAKRREessnRLTQQLEEQYRERSRAVEELRTLREQMNRFEESACQAqaravqaaiadveqrmqRQLEQERSRDQDKED 875
Cdd:COG4913 607 DNRAKLA----ALEAELAELEEELAEAEERLEALEAELDALQERREAL-----------------QRLAEYSWDEIDVAS 665
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 876 AlvnaKAEVMAGQRALSDLQA---RLAAAQDEAKTLQLRAEAAEQTSEEhkrnAKDVQGETARQLTQGSQDLASLRTELE 952
Cdd:COG4913 666 A----EREIAELEAELERLDAssdDLAALEEQLEELEAELEELEEELDE----LKGEIGRLEKELEQAEEELDELQDRLE 737
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 953 SSTAAKVAATTLASDRAKAIAELEVLLKQVCSELGAEkqaRMKAEEQVAATQEQVLDSRSRAdQADDKLRELELAVSAE- 1031
Cdd:COG4913 738 AAEDLARLELRALLEERFAAALGDAVERELRENLEER---IDALRARLNRAEEELERAMRAF-NREWPAETADLDADLEs 813
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 388856237 1032 ----RRMMA--ERDELfHAFERRLESAEQRLQVQDKrcARMLGKL-----EGREEMDDL---LERI 1083
Cdd:COG4913 814 lpeyLALLDrlEEDGL-PEYEERFKELLNENSIEFV--ADLLSKLrrairEIKERIDPLndsLKRI 876
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
745-1039 |
1.49e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.34 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 745 RHNRIESDLSAISGFSFLDASAP------EKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRL---------- 808
Cdd:COG3096 810 KLQRLHQAFSQFVGGHLAVAFAPdpeaelAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLlpqanllade 889
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 809 --TQQLEEQYRERSRAVEELRTLREQMNRFEESACQAQARAVQAAIADVEQRMQRQLEQERSRDQDKEDALvnakAEVMA 886
Cdd:COG3096 890 tlADRLEELREELDAAQEAQAFIQQHGKALAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFAL----SEVVQ 965
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 887 GQRALS--DLQARLAAAQDEAKTLQLRAEAAEQTSEEHKRNAKDVQGetarQLTQGSQDLASLRtelessTAAKVAATTL 964
Cdd:COG3096 966 RRPHFSyeDAVGLLGENSDLNEKLRARLEQAEEARREAREQLRQAQA----QYSQYNQVLASLK------SSRDAKQQTL 1035
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 388856237 965 AsDRAKAIAELEVllkQVCSElgAEKQARMKAEEqvaaTQEQVLDSRSRADQADDKL--RELELAvSAERRMM-AERD 1039
Cdd:COG3096 1036 Q-ELEQELEELGV---QADAE--AEERARIRRDE----LHEELSQNRSRRSQLEKQLtrCEAEMD-SLQKRLRkAERD 1102
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
765-927 |
1.79e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.00 E-value: 1.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 765 SAPEKLRRLGE------EVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMNRFEE 838
Cdd:COG1579 1 AMPEDLRALLDlqeldsELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 839 sacqaqARAVQAAIADVEQrMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDE--AKTLQLRAEAAE 916
Cdd:COG1579 81 ------QLGNVRNNKEYEA-LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAEleEKKAELDEELAE 153
|
170
....*....|.
gi 388856237 917 QTSEEHKRNAK 927
Cdd:COG1579 154 LEAELEELEAE 164
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1147-1263 |
1.96e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 49.13 E-value: 1.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1147 AELEASKQEVQRWKAEAERLEASLKSQTMKEEEAKvstdehRRLHALEVEMRALSEKNEASKRQ---AEEQRSQLEAEVQ 1223
Cdd:COG4372 45 EELEQLREELEQAREELEQLEEELEQARSELEQLE------EELEELNEQLQAAQAELAQAQEElesLQEEAEELQEELE 118
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 388856237 1224 SLAQQNKDLEQQG---LQRVKQLETKIGELESQNRELEKQLSN 1263
Cdd:COG4372 119 ELQKERQDLEQQRkqlEAQIAELQSEIAEREEELKELEEQLES 161
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
768-1260 |
2.31e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.40 E-value: 2.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 768 EKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAvEELRT-LREQMNRFEEsacqaqar 846
Cdd:pfam01576 5 EEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEA-EEMRArLAARKQELEE-------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 847 avqaaiadVEQRMQRQLEQERSRDQdkedALVNAKAEVmagQRALSDLQARLAAAQDEAKTLQLraeaaEQTSEEHKrnA 926
Cdd:pfam01576 76 --------ILHELESRLEEEEERSQ----QLQNEKKKM---QQHIQDLEEQLDEEEAARQKLQL-----EKVTTEAK--I 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 927 KDVQGETARQLTQGSQdLASLRTELESSTAAKVAATTLASDRAKAIAELEVLLKQVCSELgaekQARMKAEEQVAatqeq 1006
Cdd:pfam01576 134 KKLEEDILLLEDQNSK-LSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDL----EERLKKEEKGR----- 203
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1007 vldsrsradqaddklRELElavSAERRMMAERDELfhaferRLESAEQRLQVQDKRCArmLGKLEgrEEMDDLLERI--K 1084
Cdd:pfam01576 204 ---------------QELE---KAKRKLEGESTDL------QEQIAELQAQIAELRAQ--LAKKE--EELQAALARLeeE 255
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1085 AGAAGVAKKKtagqdiaglLSSLETHIGDLELELAranaqlpdtpRDSVARSDVSATPTVYHAELEASKQEV-------- 1156
Cdd:pfam01576 256 TAQKNNALKK---------IRELEAQISELQEDLE----------SERAARNKAEKQRRDLGEELEALKTELedtldtta 316
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1157 --QRWKAEAERLEASLKsQTMKEE----EAKVStdEHRRLHALEVEmrALSEKNEASKR---------QA-EEQRSQLEA 1220
Cdd:pfam01576 317 aqQELRSKREQEVTELK-KALEEEtrshEAQLQ--EMRQKHTQALE--ELTEQLEQAKRnkanlekakQAlESENAELQA 391
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 388856237 1221 EVQSLAQQNKDLEqqglQRVKQLETKIGELESQNRELEKQ 1260
Cdd:pfam01576 392 ELRTLQQAKQDSE----HKRKKLEGQLQELQARLSESERQ 427
|
|
| PspA |
COG1842 |
Phage shock protein A [Transcription, Signal transduction mechanisms]; |
860-1085 |
2.37e-05 |
|
Phage shock protein A [Transcription, Signal transduction mechanisms];
Pssm-ID: 441447 [Multi-domain] Cd Length: 217 Bit Score: 47.51 E-value: 2.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 860 QRQLEQERsrdQDKEDALVNAK---AEVMAGQRALsdlQARLAAAQDEAKTLQLRAEAAEQTSEEhkrnakDVQGETARQ 936
Cdd:COG1842 25 EKMLDQAI---RDMEEDLVEARqalAQVIANQKRL---ERQLEELEAEAEKWEEKARLALEKGRE------DLAREALER 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 937 LTQGSQDLASLRTELESSTAA----KVAATTLASDRAKAIAELEVLLKQvcselgaEKQARMKAEEQVAATQEQVLDSRS 1012
Cdd:COG1842 93 KAELEAQAEALEAQLAQLEEQveklKEALRQLESKLEELKAKKDTLKAR-------AKAAKAQEKVNEALSGIDSDDATS 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 388856237 1013 RADQADDKLRELELAVSAERRMMAERDelfhaFERRLESAEQRLQVqdkrcarmlgklegreemDDLLERIKA 1085
Cdd:COG1842 166 ALERMEEKIEEMEARAEAAAELAAGDS-----LDDELAELEADSEV------------------EDELAALKA 215
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
806-1030 |
2.84e-05 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 48.65 E-value: 2.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 806 NRLTQQLEEQYRErsravEELRTLREQMNRFEEsacqaqaravqAAIADVEQRMQRQLEQER-SRDQDKEDALVNAKAEV 884
Cdd:PRK09510 65 NRQQQQQKSAKRA-----EEQRKKKEQQQAEEL-----------QQKQAAEQERLKQLEKERlAAQEQKKQAEEAAKQAA 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 885 MAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQTSEEHKRnaKDVQGETARQLTQGSQDLASLRTELESSTAAKVAATTL 964
Cdd:PRK09510 129 LKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAK--KKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAE 206
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 388856237 965 ASDRAKAIAELEVLLKQVCSELGAEKQARMKAEEQVAATQEQVLDSRSRADQADDKLRELELAVSA 1030
Cdd:PRK09510 207 AKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAEVDDLFGGLDSGKNA 272
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1113-1261 |
3.24e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.23 E-value: 3.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1113 DLELELARANAQLPDTPRdsvARSDVSATPTVYHAELEASKQEVQRWKAEAERLEASLKSQTMKEEEAK-----VSTdeH 1187
Cdd:COG1579 14 ELDSELDRLEHRLKELPA---ELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEeqlgnVRN--N 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 388856237 1188 RRLHALEVEMralsEKNEASKRQAEEQRSQLEAEVQSLAQQNKDLEQQGLQRVKQLETKIGELESQNRELEKQL 1261
Cdd:COG1579 89 KEYEALQKEI----ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAEL 158
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
744-940 |
3.29e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 3.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 744 LRHNRIESDLSAisgFSFLDASAPEKLRRLGEEVERKREMVRKLEsDLTSARDAAKRREESSNRLTQ----------QLE 813
Cdd:COG4717 316 LEEEELEELLAA---LGLPPDLSPEELLELLDRIEELQELLREAE-ELEEELQLEELEQEIAALLAEagvedeeelrAAL 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 814 EQYRERSRAVEELRTLREQMNRFEESACQAQARAVQAAIADVEQRMQRQLE--QERSRDQDKEDALVNAKAEVMAGQRAL 891
Cdd:COG4717 392 EQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEelEEELEELREELAELEAELEQLEEDGEL 471
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 892 SDLQARLAAAQDEAKTLQ---LRAEAAEQTSEEHKRNAKDVQ--------GETARQLTQG 940
Cdd:COG4717 472 AELLQELEELKAELRELAeewAALKLALELLEEAREEYREERlppvleraSEYFSRLTDG 531
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1032-1259 |
7.56e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 7.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1032 RRMMAERDELFHAFERRLESAEQRLQVQDKRCARMLGKLEgreEMDDLLERIKAGAAGVAKKKTAGQDIAGLLSSLETHI 1111
Cdd:PRK03918 171 IKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREIN---EISSELPELREELEKLEKEVKELEELKEEIEELEKEL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1112 GDLELELARanaqlpdtprdsvarsdvsatptvyhaeLEASKQEVQRWKAEAERLEASLKSQTMKEEEAKVSTDEHRRLH 1191
Cdd:PRK03918 248 ESLEGSKRK----------------------------LEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLS 299
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1192 ALEVEMraLSEKNEASKRQA--EEQRSQLEAEVQSLAQQNKDLEQQgLQRVKQLETKIGELESQNRELEK 1259
Cdd:PRK03918 300 EFYEEY--LDELREIEKRLSrlEEEINGIEERIKELEEKEERLEEL-KKKLKELEKRLEELEERHELYEE 366
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
967-1261 |
8.52e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 47.20 E-value: 8.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 967 DRAKAIAELEVLLKQVCSELGAEKQARMKAEEQVAATQEQVLDSRSRADQADDKLRELELAVSAERRMMAERDELFHAFE 1046
Cdd:pfam07888 42 ERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1047 RRLESAEQRLQVQDKRCARMLGKLEGRE-EMDDLLERIKAGAAGVAKKKTAGQDIAGLLSSLETHIGDLELELARANAQL 1125
Cdd:pfam07888 122 AQRAAHEARIRELEEDIKTLTQRVLEREtELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1126 PD------TPRDSVAR-SDVSATPTVYHAELEASKQEVqrwKAEAERLEAS-LKSQTMKEEEAKVSTDE---HRRLHALE 1194
Cdd:pfam07888 202 AQrdtqvlQLQDTITTlTQKLTTAHRKEAENEALLEEL---RSLQERLNASeRKVEGLGEELSSMAAQRdrtQAELHQAR 278
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 388856237 1195 VEMRALSEKNEASKRQAEEQRSQLEAEVQSLaQQNKDLEQQGLQR----VKQLETKIGELESQNRELEKQL 1261
Cdd:pfam07888 279 LQAAQLTLQLADASLALREGRARWAQERETL-QQSAEADKDRIEKlsaeLQRLEERLQEERMEREKLEVEL 348
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
972-1262 |
1.12e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 972 IAELEVLLKQVCSELGAEKQARMKAEEQVAATQEQVLDSRSRADqaddKLRELELAVSAERRMMAERDELFHAFERRLES 1051
Cdd:PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE----EIEELEKELESLEGSKRKLEEKIRELEERIEE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1052 AEQRLQVQDKRCARmLGKLEGREEmddllERIKagaagvakkktagqdIAGLLSSLETHIGDLELELARANAQLpdtprd 1131
Cdd:PRK03918 271 LKKEIEELEEKVKE-LKELKEKAE-----EYIK---------------LSEFYEEYLDELREIEKRLSRLEEEI------ 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1132 svarsdvsatptvyhAELEASKQEVQRWKAEAERLEASLKSQTMKEEEAKVSTDEHRRLHALEVEMRALsekneaSKRQA 1211
Cdd:PRK03918 324 ---------------NGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERL------KKRLT 382
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 388856237 1212 EEQRSQLEAEVQSLAQQNKDLEQQglqrVKQLETKIGELESQNRELEKQLS 1262
Cdd:PRK03918 383 GLTPEKLEKELEELEKAKEEIEEE----ISKITARIGELKKEIKELKKAIE 429
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
768-975 |
1.17e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 768 EKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMNRFEES-------- 839
Cdd:COG4942 34 QEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEElaellral 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 840 --ACQAQARAVQAAIADVEQ--RMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAA 915
Cdd:COG4942 114 yrLGRQPPLALLLSPEDFLDavRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEAL 193
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 388856237 916 EQTSEEHKRNAKDVQGETARQLTQGSQDLASLRTELES--STAAKVAATTLASDRAKAIAEL 975
Cdd:COG4942 194 KAERQKLLARLEKELAELAAELAELQQEAEELEALIARleAEAAAAAERTPAAGFAALKGKL 255
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
764-966 |
1.50e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 764 ASAPEKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQ---YRERSRAVEELRTLREQMNRFEESA 840
Cdd:COG4942 51 KALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQkeeLAELLRALYRLGRQPPLALLLSPED 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 841 CQAQARAVQAAIADVEQRMQR--QLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQT 918
Cdd:COG4942 131 FLDAVRRLQYLKYLAPARREQaeELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAE 210
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 388856237 919 SEehkrnakdvqgETARQLTQGSQDLASLRTELESSTAAKVAATTLAS 966
Cdd:COG4942 211 LA-----------AELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
750-1264 |
1.95e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.65 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 750 ESDLSAISGFSFLDASAPEKLRRLGEEVERKREMVRKLESDLTSARDAAKRR-----EESSNRLTQQLEEQYRERSRAVE 824
Cdd:pfam15921 206 EHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKielllQQHQDRIEQLISEHEVEITGLTE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 825 ELRTLREQMNRFE------ESACQAQARAVQAAIADVEQRMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSdlQARL 898
Cdd:pfam15921 286 KASSARSQANSIQsqleiiQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELT--EART 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 899 AAAQDEAKTLQLRAEAAEQTSEEHKRNAK-DVQGETARQL----TQGSQDLASLRTELEsstaakvaattlasDRAKAIA 973
Cdd:pfam15921 364 ERDQFSQESGNLDDQLQKLLADLHKREKElSLEKEQNKRLwdrdTGNSITIDHLRRELD--------------DRNMEVQ 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 974 ELEVLLKQVCSELGAEKQARMKA--------------------------------------------------------E 997
Cdd:pfam15921 430 RLEALLKAMKSECQGQMERQMAAiqgkneslekvssltaqlestkemlrkvveeltakkmtlessertvsdltaslqekE 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 998 EQVAATQEQVLDSRSRAD----------QADDKLRELELAVSAERRMMAERDELFHAFERRLESAEQRLQVQDKRCARML 1067
Cdd:pfam15921 510 RAIEATNAEITKLRSRVDlklqelqhlkNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQ 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1068 -GKLEGREEMDDllERIKAGAAGVAKKKTAGQdiaglLSSLETHIGDLELE---LARANAQLPDTPRD------------ 1131
Cdd:pfam15921 590 vEKAQLEKEIND--RRLELQEFKILKDKKDAK-----IRELEARVSDLELEkvkLVNAGSERLRAVKDikqerdqllnev 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1132 SVARSDVSATPTVYHAELEASKQEVQRWKAEAERLEASLKSQTMKEEEAK--VSTDEHRRLHALEVEMrALSEKNEASKR 1209
Cdd:pfam15921 663 KTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRntLKSMEGSDGHAMKVAM-GMQKQITAKRG 741
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 388856237 1210 QAEEQRSQLEAEVQSLAQQNKD---LEQQGLQRVKQLET-------KIGELE---SQNRELEKQLSNV 1264
Cdd:pfam15921 742 QIDALQSKIQFLEEAMTNANKEkhfLKEEKNKLSQELSTvateknkMAGELEvlrSQERRLKEKVANM 809
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
855-1264 |
2.08e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 855 VEQRMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQTSEEHKRNAkdvqgETA 934
Cdd:PTZ00121 1029 IEELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKA-----EEA 1103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 935 RQLTQGSQDLASLRTElesstaakvaattlASDRAKAIAELEvllkqvcsELGAEKQARmKAEEQVAATQEQVLDSRSRA 1014
Cdd:PTZ00121 1104 KKTETGKAEEARKAEE--------------AKKKAEDARKAE--------EARKAEDAR-KAEEARKAEDAKRVEIARKA 1160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1015 DQAddklRELELAVSAE--RRMMAER--DELFHAFERRleSAEQRLQVQDKRCARMLGKLEGREEMDDLLERIKAGAAGV 1090
Cdd:PTZ00121 1161 EDA----RKAEEARKAEdaKKAEAARkaEEVRKAEELR--KAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEE 1234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1091 AKKKTAgqdiagllsslethigdlELELARANAQLPDTPRDSVARSDVSATPTVYHAELEASKQEVQRWKAEAERLEASL 1170
Cdd:PTZ00121 1235 AKKDAE------------------EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAK 1296
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1171 KSQTMKE-EEAKVSTDEHRRLHALEVEMRALSEKNEASKRQAEEQRSQLEAEvQSLAQQNKDLEQQGLQRVKQLETKIGE 1249
Cdd:PTZ00121 1297 KAEEKKKaDEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAA-KAEAEAAADEAEAAEEKAEAAEKKKEE 1375
|
410
....*....|....*
gi 388856237 1250 LESQNRELEKQLSNV 1264
Cdd:PTZ00121 1376 AKKKADAAKKKAEEK 1390
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
759-951 |
2.21e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 46.20 E-value: 2.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 759 FSFLDASAPE--KLRRLGEEVE-----RKREMVRKLESDLTSARDaakrREESSNRLtqqleEQYRersRAVEEL----R 827
Cdd:PRK10929 15 WGAYAATAPDekQITQELEQAKaaktpAQAEIVEALQSALNWLEE----RKGSLERA-----KQYQ---QVIDNFpklsA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 828 TLREQMNRFEESACQAQARAVQAaiaDVEQRM----------QRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQAR 897
Cdd:PRK10929 83 ELRQQLNNERDEPRSVPPNMSTD---ALEQEIlqvssqllekSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERR 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 898 LAA------AQDEAKTLQLRAEAAeqtseehKRNAKDVQGETARQLTQGSQDLASLRTEL 951
Cdd:PRK10929 160 LQTlgtpntPLAQAQLTALQAESA-------ALKALVDELELAQLSANNRQELARLRSEL 212
|
|
| TPR_MLP1_2 |
pfam07926 |
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of ... |
1147-1260 |
2.27e-04 |
|
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of human TPR protein and to yeast myosin-like proteins 1 (MLP1) and 2 (MLP2). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores. TPR is thought to be a component of nuclear pore complex- attached intra-nuclear filaments, and is implicated in nuclear protein import. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerization of kinase domains or by targeting these kinases to the nuclear pore complex. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity.
Pssm-ID: 462316 [Multi-domain] Cd Length: 129 Bit Score: 43.01 E-value: 2.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1147 AELEASKQEVQRWKAEAERLEASLKSQTMKEEEAKVSTDEHRRLHALEV-EMRALSEKNEaskrQAEEQRSQLEAEVQSL 1225
Cdd:pfam07926 8 SEIKRLKEEAADAEAQLQKLQEDLEKQAEIAREAQQNYERELVLHAEDIkALQALREELN----ELKAEIAELKAEAESA 83
|
90 100 110
....*....|....*....|....*....|....*
gi 388856237 1226 AQQNKDLEQQGLQRVKQLETKIGELESQNRELEKQ 1260
Cdd:pfam07926 84 KAELEESEESWEEQKKELEKELSELEKRIEDLNEQ 118
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
857-1147 |
2.28e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.59 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 857 QRMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQTSEEhkrnAKDVQGETARQ 936
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEE----RREELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 937 LTQGSQDLASLRTELESSTAAKVAattlasDRAKAiaeLEVLLKQVCSELGAEKQARMKAEEQVAATQEQVLDSRSRADQ 1016
Cdd:COG3883 95 LYRSGGSVSYLDVLLGSESFSDFL------DRLSA---LSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1017 ADDKLRELELAVSAERRMMAERDELFHAFERRLESAEQRLQVQDKRCARMLGKLEGREEMDDLLERIKAGAAGVAKKKTA 1096
Cdd:COG3883 166 LEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAS 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 388856237 1097 GQDIAGLLSSLETHIGDLELELARANAQLPDTPRDSVARSDVSATPTVYHA 1147
Cdd:COG3883 246 AAGAGAAGAAGAAAGSAGAAGAAAGAAGAGAAAASAAGGGAGGAGGGGGGG 296
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
906-1266 |
2.40e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.10 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 906 KTLQLRAEAAEQTSEEHKrnAKDVQGETARQLTQGSQDLASLRTELESSTA--AKV-AATTLASDRAKAIAELEvllkqv 982
Cdd:PRK04863 287 EALELRRELYTSRRQLAA--EQYRLVEMARELAELNEAESDLEQDYQAASDhlNLVqTALRQQEKIERYQADLE------ 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 983 cselgaEKQARMKAEEQVAAT-QEQVLDSRSRADQADDKLREL--ELAVSAERRMMAERDEL-FHAFERRLESAEQRLQV 1058
Cdd:PRK04863 359 ------ELEERLEEQNEVVEEaDEQQEENEARAEAAEEEVDELksQLADYQQALDVQQTRAIqYQQAVQALERAKQLCGL 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1059 QDKrcarmlgklegreEMDDLLERIkagAAGVAKKKTAGQDIAGL---LSSLETHIGDLE--LELARANAqlpdtprDSV 1133
Cdd:PRK04863 433 PDL-------------TADNAEDWL---EEFQAKEQEATEELLSLeqkLSVAQAAHSQFEqaYQLVRKIA-------GEV 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1134 ARSDvsATPTVYHAELEASKQ-----EVQRWKAEAERLEASLKSQTMKEE-------EAKVSTDEHRRLHALEVEMRALS 1201
Cdd:PRK04863 490 SRSE--AWDVARELLRRLREQrhlaeQLQQLRMRLSELEQRLRQQQRAERllaefckRLGKNLDDEDELEQLQEELEARL 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1202 EKNEASKRQAEEQRSQLEAEVQSLAQQNKDLE----------------------------------QQGLQRVKQLETKI 1247
Cdd:PRK04863 568 ESLSESVSEARERRMALRQQLEQLQARIQRLAarapawlaaqdalarlreqsgeefedsqdvteymQQLLERERELTVER 647
|
410
....*....|....*....
gi 388856237 1248 GELESQNRELEKQLSNVSN 1266
Cdd:PRK04863 648 DELAARKQALDEEIERLSQ 666
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
795-1280 |
2.45e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 45.97 E-value: 2.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 795 RDAAKRREESSNrlTQQLEEQYR---ERSRAV--------EELRTLREQMNRFEE---SACQAQARAVQAAIADVEQRMQ 860
Cdd:pfam10174 43 KERALRKEEAAR--ISVLKEQYRvtqEENQHLqltiqalqDELRAQRDLNQLLQQdftTSPVDGEDKFSTPELTEENFRR 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 861 RQLEQERsrdQDKEDALVNAKAEVMA----GQRalSDLQARLAAAQDEAKTLQLRAEAAEQTSEEHKRNAKDVQGETA-- 934
Cdd:pfam10174 121 LQSEHER---QAKELFLLRKTLEEMElrieTQK--QTLGARDESIKKLLEMLQSKGLPKKSGEEDWERTRRIAEAEMQlg 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 935 ---RQLTQGSQDLASLRTELES-------STAAKVAATTLASDRAKaIAELEVLLKQVCSELGAEKQARMKAEEQVAATQ 1004
Cdd:pfam10174 196 hleVLLDQKEKENIHLREELHRrnqlqpdPAKTKALQTVIEMKDTK-ISSLERNIRDLEDEVQMLKTNGLLHTEDREEEI 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1005 EQVLDSRSRADQADDKLRELELAVS-AERRMMAERDEL------FHAFERRLESAEQRLQVQDKRCARMlgklegREEMD 1077
Cdd:pfam10174 275 KQMEVYKSHSKFMKNKIDQLKQELSkKESELLALQTKLetltnqNSDCKQHIEVLKESLTAKEQRAAIL------QTEVD 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1078 DLLERIKAGAAGVAKKKTAGQDIAGLLSSLETHIGDLELELaranaqlpdtprdSVARSDVSatptVYHAELEaSKQEVQ 1157
Cdd:pfam10174 349 ALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDML-------------DVKERKIN----VLQKKIE-NLQEQL 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1158 RWKaeaERLEASLKSQTMKEEEAKVSTDEhrrlhALEVEMRALSEKN---EASKRQAEEQRSQLEAEVQSLAQQNKDLEQ 1234
Cdd:pfam10174 411 RDK---DKQLAGLKERVKSLQTDSSNTDT-----ALTTLEEALSEKEriiERLKEQREREDRERLEELESLKKENKDLKE 482
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 388856237 1235 qglqrvkqletKIGELESQNRELEKQLSNVSNHASNPASPATSPDT 1280
Cdd:pfam10174 483 -----------KVSALQPELTEKESSLIDLKEHASSLASSGLKKDS 517
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
771-1269 |
2.60e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 771 RRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLreqMNRFEESACQAQARAVQA 850
Cdd:pfam15921 134 RRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSI---LVDFEEASGKKIYEHDSM 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 851 AIADVEQ------RMQRQLEQERSRDQDK----EDALVNAKAEVMAG------------QRALSDLQARLAAAQDEAKTL 908
Cdd:pfam15921 211 STMHFRSlgsaisKILRELDTEISYLKGRifpvEDQLEALKSESQNKielllqqhqdriEQLISEHEVEITGLTEKASSA 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 909 QLRAEAAEQTSEEHKRNAKDVQGETARQLTQGSQDLASLRTELESstaakvaATTLASDRakaIAELEVLLKQVCSELGA 988
Cdd:pfam15921 291 RSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELRE-------AKRMYEDK---IEELEKQLVLANSELTE 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 989 EKQARMKAEEQVAAtqeqvLDSRSRADQADDKLRELELAVSAE-------------------RRMMAERDELFHAFERRL 1049
Cdd:pfam15921 361 ARTERDQFSQESGN-----LDDQLQKLLADLHKREKELSLEKEqnkrlwdrdtgnsitidhlRRELDDRNMEVQRLEALL 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1050 ESAEQRLQVQ-DKRCARMLGKLEGREEMDDL---LERIKAGAAGVAKKKTAGQDIaglLSSLETHIGDLELELARANAQL 1125
Cdd:pfam15921 436 KAMKSECQGQmERQMAAIQGKNESLEKVSSLtaqLESTKEMLRKVVEELTAKKMT---LESSERTVSDLTASLQEKERAI 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1126 PDTprdsvarsdvSATPTVYHAELEASKQEVQRWKAEAERLEaslKSQTMKEEEAKVSTDEHRRLHALEVEMRALSEKNE 1205
Cdd:pfam15921 513 EAT----------NAEITKLRSRVDLKLQELQHLKNEGDHLR---NVQTECEALKLQMAEKDKVIEILRQQIENMTQLVG 579
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 388856237 1206 ASKRQA---EEQRSQLEAEVqslaqQNKDLEQQGLQRVK-QLETKIGELESQNRELEKQLSNVSNHAS 1269
Cdd:pfam15921 580 QHGRTAgamQVEKAQLEKEI-----NDRRLELQEFKILKdKKDAKIRELEARVSDLELEKVKLVNAGS 642
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
943-1262 |
2.85e-04 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 45.44 E-value: 2.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 943 DLASLRTELeSSTAAKVAATTLASDRAKA-IAELEVLLKQVCSELGAEKQARMKAEEQVAATQEQVLDSRSRADQADDKL 1021
Cdd:pfam19220 21 DLRSLKADF-SQLIEPIEAILRELPQAKSrLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAAL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1022 RELELAVSAERRMMAERDELFHAFERRLESAEQRLQV----------QDKRCARMLGKLEGreEMDDLLERIKAGAAGVA 1091
Cdd:pfam19220 100 REAEAAKEELRIELRDKTAQAEALERQLAAETEQNRAleeenkalreEAQAAEKALQRAEG--ELATARERLALLEQENR 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1092 KKKTAGQDIAGLLSSLETHIGDLELELARANAQLpdtprdsvarsdvSATPTVYHAELEASKQEVQRWKAEAERLEASLK 1171
Cdd:pfam19220 178 RLQALSEEQAAELAELTRRLAELETQLDATRARL-------------RALEGQLAAEQAERERAEAQLEEAVEAHRAERA 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1172 SQTMKEEEAkvstdeHRRLHALEV---EMRALSEKNEASKRQAEEQRSQLEAEVQSLAQQNKDLEQQGLQRVKQL---ET 1245
Cdd:pfam19220 245 SLRMKLEAL------TARAAATEQllaEARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFqemQR 318
|
330
....*....|....*..
gi 388856237 1246 KIGELESQNRELEKQLS 1262
Cdd:pfam19220 319 ARAELEERAEMLTKALA 335
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
771-1261 |
2.87e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.98 E-value: 2.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 771 RRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAveELRTLREQMNRFEE----------SA 840
Cdd:pfam12128 379 RRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEA--GKLEFNEEEYRLKSrlgelklrlnQA 456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 841 CQAQARAVQAAIADVE-QRMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQTS 919
Cdd:pfam12128 457 TATPELLLQLENFDERiERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTL 536
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 920 EEHKRNA----KDVQGETARQLTQGSQDLASLRTELESSTAAKVAATTLASDRAKAIA------ELEVLLKQVCSELGAE 989
Cdd:pfam12128 537 LHFLRKEapdwEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEwaaseeELRERLDKAEEALQSA 616
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 990 KQARMKAEEQVAATQEQV-------LDSRSRADQADDKLRELelavSAERRmmAERDELFHAFERRLESAEQRLQvqdkr 1062
Cdd:pfam12128 617 REKQAAAEEQLVQANGELekasreeTFARTALKNARLDLRRL----FDEKQ--SEKDKKNKALAERKDSANERLN----- 685
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1063 carmlgKLEGreEMDDLLERIKAGAAgvAKKKTAGQDIAGLLSSLETHIGDLELELARANAQLpdTPRDSVARSDVSATP 1142
Cdd:pfam12128 686 ------SLEA--QLKQLDKKHQAWLE--EQKEQKREARTEKQAYWQVVEGALDAQLALLKAAI--AARRSGAKAELKALE 753
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1143 TVYHAELEA---SKQEVQRWKAEAERLEASLksqtmkeEEAKVSTDEHRRLHALEVEmralsekneaskrQAEEQRSQLE 1219
Cdd:pfam12128 754 TWYKRDLASlgvDPDVIAKLKREIRTLERKI-------ERIAVRRQEVLRYFDWYQE-------------TWLQRRPRLA 813
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 388856237 1220 AEVQSLAQQNKDLEQQGLQRVKQLETKIGELESQNRELEKQL 1261
Cdd:pfam12128 814 TQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQ 855
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1107-1262 |
2.88e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1107 LETHIGDLELELARANAQLPDTPRDSVarsdvsatptVYHAELEASKQEVQRWKAEAERLEASLKSQtmKEEEAKVSTde 1186
Cdd:TIGR04523 80 LEQQIKDLNDKLKKNKDKINKLNSDLS----------KINSEIKNDKEQKNKLEVELNKLEKQKKEN--KKNIDKFLT-- 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1187 hrRLHALEVEMRALSEKNEASKRQAEE---QRSQLEAEVQSLAQQNKDLEQQGL-------------QRVKQLETKIGEL 1250
Cdd:TIGR04523 146 --EIKKKEKELEKLNNKYNDLKKQKEElenELNLLEKEKLNIQKNIDKIKNKLLklelllsnlkkkiQKNKSLESQISEL 223
|
170
....*....|..
gi 388856237 1251 ESQNRELEKQLS 1262
Cdd:TIGR04523 224 KKQNNQLKDNIE 235
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1021-1489 |
3.03e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 3.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1021 LRELElAVSAERRMMAERDELFHAFERRLESAEQRLQVQDKRCARMLGKLEGREEMDDLLERIKAgaagvakkktagqdi 1100
Cdd:COG4717 70 LKELK-ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQE--------------- 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1101 aglLSSLETHIGDLELELARANAQLpdTPRDSVARsdvsatptvyhaELEASKQEVQRWKAEAERLEASLksQTMKEEEA 1180
Cdd:COG4717 134 ---LEALEAELAELPERLEELEERL--EELRELEE------------ELEELEAELAELQEELEELLEQL--SLATEEEL 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1181 KVSTDEHRRLHALEVEMRALSEKNEASKRQAEEQRSQLEAEVQSLAQQNKDLEQQGLQRVkqlETKIGELESQNRELEKQ 1260
Cdd:COG4717 195 QDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLI---AAALLALLGLGGSLLSL 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1261 LSNVSNHA-------SNPASPATSPDTLPVRAVNTTSPRSATFPLPNKGVGNLIDRFGggrkvsseFRAEDSPAMTQAWM 1333
Cdd:COG4717 272 ILTIAGVLflvlgllALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALG--------LPPDLSPEELLELL 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1334 HSIENLRAMLPDLSAAAKgSADLNALRDAFQTCSTvspsLTAVKSPSSARIPLGAADLQAELEATAERIRSTLAISRTVI 1413
Cdd:COG4717 344 DRIEELQELLREAEELEE-ELQLEELEQEIAALLA----EAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGEL 418
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 388856237 1414 dLALVSEVDKENRAQpqsgdkKEATVQAQADALSSQ-QALLTRITSLTAKVKEQADREkhlkvELAEVRGELEEARA 1489
Cdd:COG4717 419 -EELLEALDEEELEE------ELEELEEELEELEEElEELREELAELEAELEQLEEDG-----ELAELLQELEELKA 483
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1147-1266 |
3.22e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 3.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1147 AELEA-SKQEVQRWKAEaerLEASLKSQTMKEEEAKVSTDE--------HRRLHALEVEMRALSEKNEASKRQAEEQRSQ 1217
Cdd:TIGR04523 295 SEISDlNNQKEQDWNKE---LKSELKNQEKKLEEIQNQISQnnkiisqlNEQISQLKKELTNSESENSEKQRELEEKQNE 371
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 388856237 1218 LEA----------EVQSLAQQNKDLEQQgLQRV----KQLETKIGELESQNRELEKQLSNVSN 1266
Cdd:TIGR04523 372 IEKlkkenqsykqEIKNLESQINDLESK-IQNQeklnQQKDEQIKKLQQEKELLEKEIERLKE 433
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
857-1190 |
3.60e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.89 E-value: 3.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 857 QRMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQTSEEHKRNAKDVQGETArQ 936
Cdd:COG4372 41 DKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELE-E 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 937 LTQGSQDLASLRTELESSTAAKVAATTLASDRAKAIAELEVLLKQVCSELGAEKQARMKAEEQvAATQEQVLDSRSRADQ 1016
Cdd:COG4372 120 LQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAE-QALDELLKEANRNAEK 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1017 ADDKLRELELAVSAERRmmaERDELFHAFERRLESAEQRLQVQDKRCARMLGKLEGREEMDDLLERIKAGAAGVAKKKTA 1096
Cdd:COG4372 199 EEELAEAEKLIESLPRE---LAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEE 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1097 GQDIAGLLSSLETHIGDLELELARANAQLPDTPRDSVARSDVSATPTVYHAELEASKQEVQRWKAEAERLEAS-LKSQTM 1175
Cdd:COG4372 276 EELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVgLLDNDV 355
|
330
....*....|....*
gi 388856237 1176 KEEEAKVSTDEHRRL 1190
Cdd:COG4372 356 LELLSKGAEAGVADG 370
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
753-906 |
3.90e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 3.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 753 LSAISGFSFLDASAPEKLRRLgEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQ 832
Cdd:COG4913 650 LQRLAEYSWDEIDVASAEREI-AELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE 728
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 388856237 833 MNRFEESACQAQARAVQAAIADVEQRMQRQLEQERSRDQDKedalvNAKAEVMAGQRALSDLQARLAAAQDEAK 906
Cdd:COG4913 729 LDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRE-----NLEERIDALRARLNRAEEELERAMRAFN 797
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
934-1091 |
4.21e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 4.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 934 ARQLTQGSQDLASLRTELESSTAAKVAATTLASDRAKAIAELEVLLKQVCSELgAEKQARM---KAEEQVAATQEQVLDS 1010
Cdd:COG1579 23 EHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARI-KKYEEQLgnvRNNKEYEALQKEIESL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1011 RSRADQADDKLRELELAVSAERRMMAERDELFHAFERRLESAEQRLQVQDKRCARMLGKLEG-REEM-----DDLL---E 1081
Cdd:COG1579 102 KRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAeREELaakipPELLalyE 181
|
170
....*....|
gi 388856237 1082 RIKAGAAGVA 1091
Cdd:COG1579 182 RIRKRKNGLA 191
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
814-1207 |
5.29e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.96 E-value: 5.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 814 EQYRERSRAVEELRTLREQMNRFEesacqaqaravqaaiaDVEQRMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSD 893
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELI----------------IDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 894 LQARLAAAQDEAKTLQLRAEAAEQTSEEHK----------RNAKDVQGETARQLTQGSQDLASLRTELESSTAAKVAATT 963
Cdd:pfam02463 230 DYLKLNEERIDLLQELLRDEQEEIESSKQEiekeeeklaqVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 964 LASDRAKAIAELEVllkqvcselgAEKQARMKAEEQVAATQEQVLDSRSRADQA-----DDKLRELELAVSAERRMMAER 1038
Cdd:pfam02463 310 VDDEEKLKESEKEK----------KKAEKELKKEKEEIEELEKELKELEIKREAeeeeeEELEKLQEKLEQLEEELLAKK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1039 DELFHAFERRLESAEQRLQVQDKRCARMLGKLEGRE-EMDDLLERIKAGAAGVAKKKTAGQDIAGLLSSLETHIGDLELE 1117
Cdd:pfam02463 380 KLESERLSSAAKLKEEELELKSEEEKEAQLLLELARqLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELK 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1118 LARANAQlpDTPRDSVARSDVSATPTVYHAE-LEASKQEVQRWKAEAERLEASLKSQTMKEEEAKVSTDEHRRLHALEVE 1196
Cdd:pfam02463 460 LLKDELE--LKKSEDLLKETQLVKLQEQLELlLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVA 537
|
410
....*....|.
gi 388856237 1197 MRALSEKNEAS 1207
Cdd:pfam02463 538 VENYKVAISTA 548
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
754-1017 |
5.41e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 5.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 754 SAISGFSFLDASAPEKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQM 833
Cdd:COG3883 2 LALALAAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 834 NRFEEsacqaqaravqaaiaDVEQRMQRQleQERSRDQDKEDALVNAK--AEVMAGQRALSDLQARLAAAQDEAKTLQLR 911
Cdd:COG3883 82 EERRE---------------ELGERARAL--YRSGGSVSYLDVLLGSEsfSDFLDRLSALSKIADADADLLEELKADKAE 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 912 AEAAEQTSEEHKRNAKDVQgetarqltqgsQDLASLRTELESSTAAKVAA-TTLASDRAKAIAELEVLLKQVCSELGAEK 990
Cdd:COG3883 145 LEAKKAELEAKLAELEALK-----------AELEAAKAELEAQQAEQEALlAQLSAEEAAAEAQLAELEAELAAAEAAAA 213
|
250 260
....*....|....*....|....*..
gi 388856237 991 QARMKAEEQVAATQEQVLDSRSRADQA 1017
Cdd:COG3883 214 AAAAAAAAAAAAAAAAAAAAAAAAAAA 240
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1046-1261 |
5.76e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 5.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1046 ERRLESAEQRLQVQDKRCARMLGKLEGREEMddlLERIKAgAAGVAKKKTAGQDIAGLLSSLETHIGDLELELARANAQL 1125
Cdd:COG3206 167 ELRREEARKALEFLEEQLPELRKELEEAEAA---LEEFRQ-KNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1126 pDTPRDSVARSDVSATPTVYHAELEASKQEVQRWKAEAERLEASLksqtmkeeeakvsTDEHRRLHALEVEMRALsekNE 1205
Cdd:COG3206 243 -AALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARY-------------TPNHPDVIALRAQIAAL---RA 305
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 388856237 1206 ASKRQAEEQRSQLEAEVQSLAQQNKDLEQQgLQRVKQLETKIGELESQNRELEKQL 1261
Cdd:COG3206 306 QLQQEAQRILASLEAELEALQAREASLQAQ-LAQLEARLAELPELEAELRRLEREV 360
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
966-1261 |
5.79e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 5.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 966 SDRAKAIAELEVLLK--QVCSELGA-EKQARMKAEEQVAATQEQVLDSRSRADQADDKLRELELAVSAERRMMAERDELF 1042
Cdd:TIGR00618 163 KEKKELLMNLFPLDQytQLALMEFAkKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSH 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1043 HAFERRLESAEQRLQVQdKRCARMLGKLEGREEMDDLLERikagaagvAKKKTAGQDIAGLLSSLETHIGDLELELARAN 1122
Cdd:TIGR00618 243 AYLTQKREAQEEQLKKQ-QLLKQLRARIEELRAQEAVLEE--------TQERINRARKAAPLAAHIKAVTQIEQQAQRIH 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1123 AQLPDTPRDSVARSDVSATPTVYHAELEASKQEVQRWKAEAERLEASLKSQTMKEEEAKVSTDEHRRLHALEVEMRALSE 1202
Cdd:TIGR00618 314 TELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQ 393
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 388856237 1203 KNEASKrQAEEQRSQLEAEVQSLAQQNKDLEQQGLQRVKQLETKIGELESQNRELEKQL 1261
Cdd:TIGR00618 394 KLQSLC-KELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTA 451
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
795-1188 |
6.94e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.56 E-value: 6.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 795 RDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMNRFeesacqAQARAVQAAIADVEQRMQ----------RQLE 864
Cdd:PRK04863 781 RAAREKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRF------IGSHLAVAFEADPEAELRqlnrrrveleRALA 854
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 865 QERSRDQDKEDALVNAKAEVmagqRALSDLQARLAAAQDEakTLQLRAEAAEQTSEEHKRNAKDVQgETARQLTQGSQDL 944
Cdd:PRK04863 855 DHESQEQQQRSQLEQAKEGL----SALNRLLPRLNLLADE--TLADRVEEIREQLDEAEEAKRFVQ-QHGNALAQLEPIV 927
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 945 ASLRTE------LESSTAAKVAATTLASDRAKAIAElevlLKQVCSELGAEKQARMKAEEQ--VAATQEQVLDSRSRADQ 1016
Cdd:PRK04863 928 SVLQSDpeqfeqLKQDYQQAQQTQRDAKQQAFALTE----VVQRRAHFSYEDAAEMLAKNSdlNEKLRQRLEQAEQERTR 1003
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1017 ADDKLRElelavSAERrmMAERDELFHAFERRLESAEQRLQvqdkrcarmlgklEGREEMDDLLERIKAGAagvAKKKTA 1096
Cdd:PRK04863 1004 AREQLRQ-----AQAQ--LAQYNQVLASLKSSYDAKRQMLQ-------------ELKQELQDLGVPADSGA---EERARA 1060
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1097 GQD-IAGLLS-------SLETHIGDLELELARANAQLPDTPRDsvarsdvsatptvYHAELEASKQEVQRWKAEAERLEA 1168
Cdd:PRK04863 1061 RRDeLHARLSanrsrrnQLEKQLTFCEAEMDNLTKKLRKLERD-------------YHEMREQVVNAKAGWCAVLRLVKD 1127
|
410 420
....*....|....*....|.
gi 388856237 1169 S-LKSQTMKEEEAKVSTDEHR 1188
Cdd:PRK04863 1128 NgVERRLHRRELAYLSADELR 1148
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
769-976 |
7.09e-04 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 44.17 E-value: 7.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 769 KLRRLgeEVERKREmvrklesdltSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRtLREQmnRFEESACQAQARAV 848
Cdd:pfam15709 344 EMRRL--EVERKRR----------EQEEQRRLQQEQLERAEKMREELELEQQRRFEEIR-LRKQ--RLEEERQRQEEEER 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 849 qaaiadvEQRMQRQLEQERSRDQDKEdalvnakaevmaGQRALSDLQAR--LAAAQDEAKTLQLRAEAAEQTSEEHKRNA 926
Cdd:pfam15709 409 -------KQRLQLQAAQERARQQQEE------------FRRKLQELQRKkqQEEAERAEAEKQRQKELEMQLAEEQKRLM 469
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 388856237 927 KDVQGETARQLTQGSQDLASLRTELESSTAAKVAATTLASDRAKAIAELE 976
Cdd:pfam15709 470 EMAEEERLEYQRQKQEAEEKARLEAEERRQKEEEAARLALEEAMKQAQEQ 519
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1179-1266 |
8.57e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.00 E-value: 8.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1179 EAKVSTDEHRRLHAL-EVEMRALSEKNEA---SKRQAEEQRSQLEAEVQSLAQQNKDLEQQGLQRVKQLETKIGELESQN 1254
Cdd:PRK12704 30 EAKIKEAEEEAKRILeEAKKEAEAIKKEAlleAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKRE 109
|
90
....*....|..
gi 388856237 1255 RELEKQLSNVSN 1266
Cdd:PRK12704 110 EELEKKEKELEQ 121
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
854-1261 |
8.72e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 8.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 854 DVEQRMQRQLEQERSRDQDKEDALVNAKaevmagqraLSDLQARLAAAQDEAKTLQLRAEAAEQTSEEhkrnAKDVQGET 933
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQIEEKEEKDLHER---------LNGLESELAELDEEIERYEEQREQARETRDE----ADEVLEEH 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 934 ARQLtqgsQDLASLRTELESSTAAKVAATTLASDRAKAIAELevllKQVCSELGAEKQARMKAEEQVAATQEQVLDSRSR 1013
Cdd:PRK02224 247 EERR----EELETLEAEIEDLRETIAETEREREELAEEVRDL----RERLEELEEERDDLLAEAGLDDADAEAVEARREE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1014 ADQADDKLRE--LELAVSAErrmmaerdelfhAFERRLESAEQRLQVQDKRCArmlgklEGREEMDDLLERIKAGAAGVA 1091
Cdd:PRK02224 319 LEDRDEELRDrlEECRVAAQ------------AHNEEAESLREDADDLEERAE------ELREEAAELESELEEAREAVE 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1092 KKKTAGQDIAGLLSSLETHIGDLELELARANAQLPD-TPRDSVARSDVsatptvyhAELEASKQEVQRWKAEAERLEASL 1170
Cdd:PRK02224 381 DRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEElREERDELRERE--------AELEATLRTARERVEEAEALLEAG 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1171 K----SQTMKEEEAKVSTDEHRrlhalevemralsekneaskrqaeEQRSQLEAEVQslaqqnkdleqqglqrvkqletk 1246
Cdd:PRK02224 453 KcpecGQPVEGSPHVETIEEDR------------------------ERVEELEAELE----------------------- 485
|
410
....*....|....*
gi 388856237 1247 igELESQNRELEKQL 1261
Cdd:PRK02224 486 --DLEEEVEEVEERL 498
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
764-1018 |
8.74e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 8.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 764 ASAPEKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRER--SRAVEELRTLREQMNRFEEsac 841
Cdd:COG3096 437 ENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVERSQawQTARELLRRYRSQQALAQR--- 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 842 qaqARAVQAAIADVEQRMQRQLEQERSRDQdkedalvnakaevmagqraLSDLQARLAAAQDEAKTLQLRAEAAEQTSEE 921
Cdd:COG3096 514 ---LQQLRAQLAELEQRLRQQQNAERLLEE-------------------FCQRIGQQLDAAEELEELLAELEAQLEELEE 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 922 HKRNAKDVQGETARQLTQGSQDLASLRTELESSTAAKVAATTLASDRAKAIAELEVLLKQVCSELGAEKQARMkAEEQVA 1001
Cdd:COG3096 572 QAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATV-ERDELA 650
|
250
....*....|....*..
gi 388856237 1002 ATQEQVLDSRSRADQAD 1018
Cdd:COG3096 651 ARKQALESQIERLSQPG 667
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
795-1211 |
1.06e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 795 RDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMNRFEESACQAQARAVQAAIADVEQRMQRQLEQERSRDQDKE 874
Cdd:COG3096 780 RAAREKRLEELRAERDELAEQYAKASFDVQKLQRLHQAFSQFVGGHLAVAFAPDPEAELAALRQRRSELERELAQHRAQE 859
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 875 DALVNAKAEVMAGQRALSDLQARLAAAQDEakTLQLRAEAAEQTSEEHKRNAKDVQ--GETARQLtqgSQDLASLRTELE 952
Cdd:COG3096 860 QQLRQQLDQLKEQLQLLNKLLPQANLLADE--TLADRLEELREELDAAQEAQAFIQqhGKALAQL---EPLVAVLQSDPE 934
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 953 SSTAAKVAATTLASDRAKAIAELEVL--LKQVCSELGAEKQARMKAE---------EQVAATQEQVLDSRSRADQADDKL 1021
Cdd:COG3096 935 QFEQLQADYLQAKEQQRRLKQQIFALseVVQRRPHFSYEDAVGLLGEnsdlneklrARLEQAEEARREAREQLRQAQAQY 1014
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1022 RE-LELAVSAERRMMAERDELfHAFERRLESAEQRLQVQDKRCArmlgklegREEMDDLLERIKAGaagvakkktagqdi 1100
Cdd:COG3096 1015 SQyNQVLASLKSSRDAKQQTL-QELEQELEELGVQADAEAEERA--------RIRRDELHEELSQN-------------- 1071
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1101 AGLLSSLETHIGDLELELARANAQLPDTPRDsvarsdvsatptvYHAELEASKQEVQRWKAeAERLEAslksqtmkeeea 1180
Cdd:COG3096 1072 RSRRSQLEKQLTRCEAEMDSLQKRLRKAERD-------------YKQEREQVVQAKAGWCA-VLRLAR------------ 1125
|
410 420 430
....*....|....*....|....*....|....*..
gi 388856237 1181 kvSTDEHRRLHALEV------EMRALSEKNEASKRQA 1211
Cdd:COG3096 1126 --DNDVERRLHRRELaylsadELRSMSDKALGALRLA 1160
|
|
| ARGLU |
pfam15346 |
Arginine and glutamate-rich 1; ARGLU, arginine and glutamate-rich 1 protein family, is ... |
768-887 |
1.10e-03 |
|
Arginine and glutamate-rich 1; ARGLU, arginine and glutamate-rich 1 protein family, is required for the oestrogen-dependent expression of ESR1 target genes. It functions in cooperation with MED1. The family of proteins is found in eukaryotes.
Pssm-ID: 405931 [Multi-domain] Cd Length: 151 Bit Score: 41.19 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 768 EKLRRLGEEVER-KREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTlREQMNRFEEsacqaqar 846
Cdd:pfam15346 38 EVERRVEEARKImEKQVLEELEREREAELEEERRKEEEERKKREELERILEENNRKIEEAQR-KEAEERLAM-------- 108
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 388856237 847 avqaaiadVEQrmQRQLEQERSRDQDKEDALVNAKAEVMAG 887
Cdd:pfam15346 109 --------LEE--QRRMKEERQRREKEEEEREKREQQKILN 139
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
764-1218 |
1.12e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.01 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 764 ASAPEKLRRLGEEVERKREMVRKLESDLTSARDAAKRReessnrlTQQLEEQYRERSRAVEELRTlreqmnRFEESACQA 843
Cdd:pfam01576 642 ARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKN-------VHELERSKRALEQQVEEMKT------QLEELEDEL 708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 844 QARAVQAAIADVE-QRMQRQLEQE-RSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQTSEE 921
Cdd:pfam01576 709 QATEDAKLRLEVNmQALKAQFERDlQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDA 788
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 922 HKRNakdvQGETARQLTQGSQDLASLRTELESSTAAKVAATTLASDRAKAIAELEVLLKQVCSELGAEKQARMKAEEQVA 1001
Cdd:pfam01576 789 ANKG----REEAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERD 864
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1002 ATQEQVLDSRS-RADQADDKLR----------ELELAVSaERRMMAER------------DELF--HAFERRLESAEQRL 1056
Cdd:pfam01576 865 ELADEIASGASgKSALQDEKRRleariaqleeELEEEQS-NTELLNDRlrkstlqveqltTELAaeRSTSQKSESARQQL 943
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1057 QVQDKRCARMLGKLEGreemddllerikagaAGVAKKKTAgqdiaglLSSLETHIGDLELELaranaqlpdtprDSVARS 1136
Cdd:pfam01576 944 ERQNKELKAKLQEMEG---------------TVKSKFKSS-------IAALEAKIAQLEEQL------------EQESRE 989
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1137 DVSATPTVYHAE---------LEASKQEVQRWKAEAERLEASLKSQTMKEEEAKvstDEHRRLHA----LEVEMRALSEK 1203
Cdd:pfam01576 990 RQAANKLVRRTEkklkevllqVEDERRHADQYKDQAEKGNSRMKQLKRQLEEAE---EEASRANAarrkLQRELDDATES 1066
|
490
....*....|....*
gi 388856237 1204 NEASKRQAEEQRSQL 1218
Cdd:pfam01576 1067 NESMNREVSTLKSKL 1081
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
1165-1261 |
1.33e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.53 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1165 RLEASLKSQTMKEEEakvstdehRRLHALEVEMRALS-EKNEASKRQA---EEQRSQLEAEVQSLAQQNKDlEQQGLQRV 1240
Cdd:COG0542 403 RMEIDSKPEELDELE--------RRLEQLEIEKEALKkEQDEASFERLaelRDELAELEEELEALKARWEA-EKELIEEI 473
|
90 100
....*....|....*....|.
gi 388856237 1241 KQLETKIGELESQNRELEKQL 1261
Cdd:COG0542 474 QELKEELEQRYGKIPELEKEL 494
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
773-1270 |
1.41e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 773 LGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMNRFEesacqaqaravqAAI 852
Cdd:TIGR04523 230 LKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLK------------SEI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 853 ADVEQRMQRQLEQE-RSRDQDKEDALVNAKAEVMAGQRALSDLQARLAaaqdeaktlQLRAEAAEQTSEEHKRNakdvqg 931
Cdd:TIGR04523 298 SDLNNQKEQDWNKElKSELKNQEKKLEEIQNQISQNNKIISQLNEQIS---------QLKKELTNSESENSEKQ------ 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 932 etaRQLTQGSQDLASLRTELESSTAAKVAATTLASDRAKAIAELEVLLKQVCSELGAEKQARMKAEEQVAATQEQVLDSR 1011
Cdd:TIGR04523 363 ---RELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNN 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1012 SRADQADDKLRELELAVSAERRMMAERDELFHAFERRLESAEQRLQVQDKRCARMLGKLEG-REEMDDLLERIKagaagV 1090
Cdd:TIGR04523 440 SEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKlNEEKKELEEKVK-----D 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1091 AKKKtagqdiaglLSSLETHIGDLELELARANAQLPDTpRDSVARSDVSATPTVYHAELEASKQEVQRWKAEAERLEasl 1170
Cdd:TIGR04523 515 LTKK---------ISSLKEKIEKLESEKKEKESKISDL-EDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLK--- 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1171 KSQTMKEEEAKVSTDehrrlhalevemralsEKNEASKRQA--EEQRSQLEAEVQSLAQQNKDLEQQglqrVKQLETKIG 1248
Cdd:TIGR04523 582 KKQEEKQELIDQKEK----------------EKKDLIKEIEekEKKISSLEKELEKAKKENEKLSSI----IKNIKSKKN 641
|
490 500
....*....|....*....|..
gi 388856237 1249 ELESQNRELEKQLSNVSNHASN 1270
Cdd:TIGR04523 642 KLKQEVKQIKETIKEIRNKWPE 663
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1031-1265 |
1.44e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1031 ERRMMAERDELFHAFERRLESAEQRLQVQDKRCARM----------LGKLEG----REEMDDLLERikagaagvaKKKTA 1096
Cdd:TIGR02169 154 ERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLdliidekrqqLERLRRerekAERYQALLKE---------KREYE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1097 GQDIAGLLSSLETHIGDLELELARANAQLPDTPRdsvarsdvsatptvyhaELEASKQEVQRwkAEAERLEASLKSQTMK 1176
Cdd:TIGR02169 225 GYELLKEKEALERQKEAIERQLASLEEELEKLTE-----------------EISELEKRLEE--IEQLLEELNKKIKDLG 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1177 EEEAKVSTdehRRLHALEVEMRALSEKNEASKRQ---AEEQRSQLEAEVQSLAQQNKDLE-QQGLQRVK--QLETKIGEL 1250
Cdd:TIGR02169 286 EEEQLRVK---EKIGELEAEIASLERSIAEKEREledAEERLAKLEAEIDKLLAEIEELErEIEEERKRrdKLTEEYAEL 362
|
250
....*....|....*
gi 388856237 1251 ESQNRELEKQLSNVS 1265
Cdd:TIGR02169 363 KEELEDLRAELEEVD 377
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
1092-1270 |
1.71e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 42.44 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1092 KKKTAG--QDIAGLLSSLETHIGDLELELARANAQLPDtprDSVARSDVSAtptvyhAELEASKQEVQRWKAEAERLEAS 1169
Cdd:pfam09787 13 KQKAARilQSKEKLIASLKEGSGVEGLDSSTALTLELE---ELRQERDLLR------EEIQKLRGQIQQLRTELQELEAQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1170 --LKSQTMKEE----EAKVSTDEHRRLHA------LEVEMRALSEKNEASKRQAEEQRSQLEAEVQSLAQQ-----NKDL 1232
Cdd:pfam09787 84 qqEEAESSREQlqelEEQLATERSARREAeaelerLQEELRYLEEELRRSKATLQSRIKDREAEIEKLRNQltsksQSSS 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 388856237 1233 EQQGL-QRVKQL-ETKIGE---LES----------QNRELEKQLSNVSNHASN 1270
Cdd:pfam09787 164 SQSELeNRLHQLtETLIQKqtmLEAlsteknslvlQLERMEQQIKELQGEGSN 216
|
|
| RNase_Y_N |
pfam12072 |
RNase Y N-terminal region; |
1147-1265 |
1.85e-03 |
|
RNase Y N-terminal region;
Pssm-ID: 463456 [Multi-domain] Cd Length: 201 Bit Score: 41.41 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1147 AELEAsKQEVQRWKAEAERleaslksqtmkeeEAKVSTDEHRRLhalevEMRaLSEKNEASKRQAEeqrsQLEAEVQSLA 1226
Cdd:pfam12072 54 ALLEA-KEEIHKLRAEAER-------------ELKERRNELQRQ-----ERR-LLQKEETLDRKDE----SLEKKEESLE 109
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 388856237 1227 QQNKDLEQQGlQRVKQLETKIGEL-ESQNRELEkQLSNVS 1265
Cdd:pfam12072 110 KKEKELEAQQ-QQLEEKEEELEELiEEQRQELE-RISGLT 147
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
807-1084 |
2.11e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.80 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 807 RLTQQLEEQYRE--RSRAVEELRTLRE-QMNRfeesacqaqaravQAAIADVEQR--MQRQLEQERSRDQDKEDALVNAK 881
Cdd:pfam17380 300 RLRQEKEEKAREveRRRKLEEAEKARQaEMDR-------------QAAIYAEQERmaMERERELERIRQEERKRELERIR 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 882 AEVMAGQ----RALSDLQarlaaAQDEAKTLQLRAEAaeqtseEHKRNAKDVQGETARQLTQGSQDLASLRTELESstAA 957
Cdd:pfam17380 367 QEEIAMEisrmRELERLQ-----MERQQKNERVRQEL------EAARKVKILEEERQRKIQQQKVEMEQIRAEQEE--AR 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 958 KVAATTLASDRAKAIA-----------ELEVLLKQVCS------ELGAEKQARMKAEEQVAATQEQVLDSRSRADQADDK 1020
Cdd:pfam17380 434 QREVRRLEEERAREMErvrleeqerqqQVERLRQQEEErkrkklELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEER 513
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 388856237 1021 LRE-LELAVSAERRMMAERDELFHAFERRLESAE----QRLQVQDKRCARMLGKLEGREEMDDLLERIK 1084
Cdd:pfam17380 514 KRKlLEKEMEERQKAIYEEERRREAEEERRKQQEmeerRRIQEQMRKATEERSRLEAMEREREMMRQIV 582
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
1130-1251 |
2.21e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 42.18 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1130 RDSVARS----DVSATPTVYHAELEASKQEVQrwKAEAERLEASLKSQTMKEEEAKVSTDEHrrlhaleveMRALSEKNE 1205
Cdd:cd16269 179 KEAEAEAilqaDQALTEKEKEIEAERAKAEAA--EQERKLLEEQQRELEQKLEDQERSYEEH---------LRQLKEKME 247
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 388856237 1206 askRQAEEQRSQLEAEVQSLAQQNKDLEQQGLQR-VKQLETKIGELE 1251
Cdd:cd16269 248 ---EERENLLKEQERALESKLKEQEALLEEGFKEqAELLQEEIRSLK 291
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1067-1272 |
2.22e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.58 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1067 LGKLEGREEMDDLLERIKAGAAGVAKKKTAGQDIAGllsslethIGDLELELARANAQLpdtprdSVARSDVSATptvyH 1146
Cdd:COG4372 4 LGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFE--------LDKLQEELEQLREEL------EQAREELEQL----E 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1147 AELEASKQEVQRWKAEAERLEASLKSQTMKEEEAKvstdehRRLHALEVEMRALS---EKNEASKRQAEEQRSQLEAEVQ 1223
Cdd:COG4372 66 EELEQARSELEQLEEELEELNEQLQAAQAELAQAQ------EELESLQEEAEELQeelEELQKERQDLEQQRKQLEAQIA 139
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 388856237 1224 SLAQQNKDLEQQglqrVKQLETKIGELESQNRELEKQLSNVSNHASNPA 1272
Cdd:COG4372 140 ELQSEIAEREEE----LKELEEQLESLQEELAALEQELQALSEAEAEQA 184
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
997-1263 |
2.31e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.85 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 997 EEQVAATQEQVLDSRSRADQADDKLRELELA---VSAERRMMAER----DELFHAFER---RLESAEQRLQvqdkrcaRM 1066
Cdd:pfam01576 4 EEEMQAKEEELQKVKERQQKAESELKELEKKhqqLCEEKNALQEQlqaeTELCAEAEEmraRLAARKQELE-------EI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1067 LGKLEGREEMDDllERikaGAAGVAKKKTAGQDIAGLLSSLETHIG---DLELELARANAQLPDTPRDSVARSDVS---- 1139
Cdd:pfam01576 77 LHELESRLEEEE--ER---SQQLQNEKKKMQQHIQDLEEQLDEEEAarqKLQLEKVTTEAKIKKLEEDILLLEDQNskls 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1140 ----------ATPTVYHAELEASKQEVQRWKAEAERLEASLKSQTMKEEEAKVSTDEHRRlhALEVEMRALSEKNEASKR 1209
Cdd:pfam01576 152 kerklleeriSEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKR--KLEGESTDLQEQIAELQA 229
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 388856237 1210 QAEEQRSQLEAEVQSLAQQNKDLEQQGLQRvKQLETKIGELESQNRELEKQLSN 1263
Cdd:pfam01576 230 QIAELRAQLAKKEEELQAALARLEEETAQK-NNALKKIRELEAQISELQEDLES 282
|
|
| COG4192 |
COG4192 |
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal ... |
761-1024 |
2.76e-03 |
|
Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms];
Pssm-ID: 443346 [Multi-domain] Cd Length: 640 Bit Score: 42.37 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 761 FLDASAPEKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYR---ERSRAVEELRTLREQMNRFE 837
Cdd:COG4192 74 FAAATNTTERSQLRNQLNTQLADIEELLAELEQLTQDAGDLRAAVADLRNLLQQLDSlltQRIALRRRLQELLEQINWLH 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 838 ESACQAQARAVQAAIADVEQRMQRQLEQERSR-DQDKEDALVNAKAEV-----MAGQRALSDLQARLAAAQDEAKTLQLR 911
Cdd:COG4192 154 QDFNSELTPLLQEASWQQTRLLDSVETTESLRnLQNELQLLLRLLAIEnqivsLLREVAAARDQADVDNLFDRLQYLKDE 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 912 AEAAEQTSEEHkrnakdVQGETARQLTQGSQDLASLRTELESSTAAKVAATtlasdrakaiAELEVLLKQVcselgaekq 991
Cdd:COG4192 234 LDRNLQALKNY------PSTITLRQLIDELLAIGSGEGGLPSLRRDELAAQ----------ATLEALAEEN--------- 288
|
250 260 270
....*....|....*....|....*....|...
gi 388856237 992 aRMKAEEQVAATQEQVLDSRSRADQADDKLREL 1024
Cdd:COG4192 289 -NSILEQLRTQISGLVGNSREQLVALNQETAQL 320
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1149-1266 |
2.81e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1149 LEASKQEVQRWKAEAErLEAslksqtmKEEEAKVSTDEHRRLHALEVEMRALSEKNEASKRQAEEQRSQLEAEVQSLAQQ 1228
Cdd:PRK12704 44 LEEAKKEAEAIKKEAL-LEA-------KEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKK 115
|
90 100 110
....*....|....*....|....*....|....*...
gi 388856237 1229 NKDLEQqglqRVKQLETKIGELESQNRELEKQLSNVSN 1266
Cdd:PRK12704 116 EKELEQ----KQQELEKKEEELEELIEEQLQELERISG 149
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
767-1084 |
2.85e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 767 PEKLRRLGEEVERKREMVRKLESDLT----SARDAAKRREESSNRLT----------QQLEEQYRER--SRAVEELRTLR 830
Cdd:PRK03918 386 PEKLEKELEELEKAKEEIEEEISKITarigELKKEIKELKKAIEELKkakgkcpvcgRELTEEHRKEllEEYTAELKRIE 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 831 EQMNRFEESACQAQARAvqaaiadVEQRMQRQLEQERSRDQDKEDALVNAKA--------EVMAGQRALSDLQARLAAAQ 902
Cdd:PRK03918 466 KELKEIEEKERKLRKEL-------RELEKVLKKESELIKLKELAEQLKELEEklkkynleELEKKAEEYEKLKEKLIKLK 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 903 DEAKTLQL---RAEAAEQTSEEHKRNAKDVQGEtarqltqgsqdLASLRTELESSTAAKVaattlaSDRAKAIAELE--- 976
Cdd:PRK03918 539 GEIKSLKKeleKLEELKKKLAELEKKLDELEEE-----------LAELLKELEELGFESV------EELEERLKELEpfy 601
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 977 ---VLLKQVCSELGAEKQARMKAEEQVAATQEQVLDSRSRADQADDKLRELELAVSAERrmMAERDELFHAFERRLESAE 1053
Cdd:PRK03918 602 neyLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEE--YEELREEYLELSRELAGLR 679
|
330 340 350
....*....|....*....|....*....|....*
gi 388856237 1054 QRLQVQDKR---CARMLGKL-EGREEMDDLLERIK 1084
Cdd:PRK03918 680 AELEELEKRreeIKKTLEKLkEELEEREKAKKELE 714
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
857-1038 |
2.88e-03 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 42.03 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 857 QRMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQTSEEHKRNAKDVQgeTARQ 936
Cdd:pfam00529 71 QAQVARLQAELDRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLARRRVLAPIGGISRESLV--TAGA 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 937 LtqgsqdLASLRTELESSTAakvaatTLASDRAKAIAELEVLLKQVCSELGAEKQARMKAEEQVAATQEQVLDSRSRAdQ 1016
Cdd:pfam00529 149 L------VAQAQANLLATVA------QLDQIYVQITQSAAENQAEVRSELSGAQLQIAEAEAELKLAKLDLERTEIRA-P 215
|
170 180
....*....|....*....|..
gi 388856237 1017 ADDKLRELELAVSAERRMMAER 1038
Cdd:pfam00529 216 VDGTVAFLSVTVDGGTVSAGLR 237
|
|
| FAM184 |
pfam15665 |
Family with sequence similarity 184, A and B; The function of FAM184 is not known. |
1147-1258 |
2.88e-03 |
|
Family with sequence similarity 184, A and B; The function of FAM184 is not known.
Pssm-ID: 464788 [Multi-domain] Cd Length: 211 Bit Score: 41.18 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1147 AELEASKQEVQRwkAEAERLEASLKSQTMKEEEAKVSTDEHRRLHALEVEMRALSEKNEASKRQAEEQRSQ--LEAEVQS 1224
Cdd:pfam15665 99 VELSREVEEAKR--AFEEKLESFEQLQAQFEQEKRKALEELRAKHRQEIQELLTTQRAQSASSLAEQEKLEelHKAELES 176
|
90 100 110
....*....|....*....|....*....|....*
gi 388856237 1225 LAQQNKDLEQQGLQRVKQLETKIGELES-QNRELE 1258
Cdd:pfam15665 177 LRKEVEDLRKEKKKLAEEYEQKLSKAQAfYERELE 211
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1100-1262 |
3.19e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 3.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1100 IAGLLSSLETHIGDLELELARANAQLpdtprdSVARSDVSATptvyHAELEASKQEVQRWKAEAERLEASLKS-QTMKEE 1178
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARL------EAAKTELEDL----EKEIKRLELEIEEVEARIKKYEEQLGNvRNNKEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1179 EA--KVSTDEHRRLHALEVEMRALSEKNEASKRQAEEQRSQLEAEVQSLAQQNKDLEqqglQRVKQLETKIGELESQNRE 1256
Cdd:COG1579 92 EAlqKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELD----EELAELEAELEELEAEREE 167
|
....*.
gi 388856237 1257 LEKQLS 1262
Cdd:COG1579 168 LAAKIP 173
|
|
| HAUS-augmin3 |
pfam14932 |
HAUS augmin-like complex subunit 3; This domain is subunit three of the augmin complex found ... |
1147-1281 |
4.01e-03 |
|
HAUS augmin-like complex subunit 3; This domain is subunit three of the augmin complex found from Drosophila to humans. The HAUS-augmin complex is made up of eight subunits. The augmin complex interacts with gamma-TuRC, and attenuation of this interaction severely impairs spindle MT generation. Furthermore, we provide evidence that human augmin plays critical and non-redundant roles in the kinetochore-MT attachment and also central spindle formation during anaphase in human cells.The HAUS complex is required for mitotic spindle assembly and for maintenance of centrosome integrity.
Pssm-ID: 464384 [Multi-domain] Cd Length: 261 Bit Score: 41.15 E-value: 4.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1147 AELEASKQEVQRWKA--EAERLEASLKS---------QTMKEEEAKVSTDEHRR-LHALEVEMRALseknEASKRQAEEQ 1214
Cdd:pfam14932 28 EELQAFEELQKSGKPilEGAALDEALKTisaespgllNQQDVEALEESLEEIREaTEDLEAELQEL----QKTKQLKINR 103
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 388856237 1215 RSQLEAEVQSLAQQNKDLEQQGLQRVKQLETKIGELESQNRELEKQLSNVSNHASNPAS--PATSPDTL 1281
Cdd:pfam14932 104 LNKLQAQASSLSQGLRALVAEEEEAAKQLEELQEELAALNAKTNNVLQSLQSEVKELASffSASEPPVF 172
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
1157-1272 |
4.20e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.62 E-value: 4.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1157 QRWKAEAERL--EASLKSQTMKEEEAKVSTDEHRRL-HALEVEMRALSEKNEASKRQAEEQRSQLEAEVQSLAQQNKDLE 1233
Cdd:PRK12705 29 QRLAKEAERIlqEAQKEAEEKLEAALLEAKELLLRErNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLE 108
|
90 100 110
....*....|....*....|....*....|....*....
gi 388856237 1234 QQGlqrvKQLETKIGELESQNRELEKQLSNVSNHASNPA 1272
Cdd:PRK12705 109 ERE----KALSARELELEELEKQLDNELYRVAGLTPEQA 143
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
741-955 |
5.15e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 5.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 741 NDPLRHNRIESDLSAISGFSFLDASAPEKLRRLGEEVERKR-------EMVRKLESDLTSARDAAKRREESSNRLTQQLE 813
Cdd:pfam17380 362 LERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARkvkileeERQRKIQQQKVEMEQIRAEQEEARQREVRRLE 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 814 EQY-----------RERSRAVEELRTLRE-------QMNRFEESACQAQARAVQAAIADVEQRMQRQLEQERSRDQDKED 875
Cdd:pfam17380 442 EERaremervrleeQERQQQVERLRQQEEerkrkklELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKE 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 876 ALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQlraEAAEQTSEEHKR-NAKDVQGETARQLTQGSQDlaslRTELESS 954
Cdd:pfam17380 522 MEERQKAIYEEERRREAEEERRKQQEMEERRRIQ---EQMRKATEERSRlEAMEREREMMRQIVESEKA----RAEYEAT 594
|
.
gi 388856237 955 T 955
Cdd:pfam17380 595 T 595
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1146-1270 |
6.58e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 6.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1146 HAELEASKQEVQRWKAEAERLEASLKsqTMKEEEAKVSTD------EHRRLHALEVEMRALSEKNEASKRQA---EEQRS 1216
Cdd:TIGR04523 151 EKELEKLNNKYNDLKKQKEELENELN--LLEKEKLNIQKNidkiknKLLKLELLLSNLKKKIQKNKSLESQIselKKQNN 228
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 388856237 1217 QLEAEVQSLAQQNKDLE------QQGLQRVK--------QLETKIGELESQNR---ELEKQLSNVSNHASN 1270
Cdd:TIGR04523 229 QLKDNIEKKQQEINEKTteisntQTQLNQLKdeqnkikkQLSEKQKELEQNNKkikELEKQLNQLKSEISD 299
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
787-1032 |
7.66e-03 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 41.17 E-value: 7.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 787 LESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQM--NRFEESACQAQARAVQAAIADVEQRMQRQLE 864
Cdd:pfam05701 196 LESAHAAHLEAEEHRIGAALAREQDKLNWEKELKQAEEELQRLNQQLlsAKDLKSKLETASALLLDLKAELAAYMESKLK 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 865 QERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQTSEEHKRNAKDVQgetaRQLTQGSQDL 944
Cdd:pfam05701 276 EEADGEGNEKKTSTSIQAALASAKKELEEVKANIEKAKDEVNCLRVAAASLRSELEKEKAELASLR----QREGMASIAV 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 945 ASLRTELESSTAAKVAATTLASDRAKAIAELEVLLKQVCSELGAEKQARMKAEEQVAATQEQVLDSRSRADQADDKL--- 1021
Cdd:pfam05701 352 SSLEAELNRTKSEIALVQAKEKEAREKMVELPKQLQQAAQEAEEAKSLAQAAREELRKAKEEAEQAKAAASTVESRLeav 431
|
250
....*....|..
gi 388856237 1022 -RELELAVSAER 1032
Cdd:pfam05701 432 lKEIEAAKASEK 443
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1147-1270 |
8.15e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 8.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1147 AELEASKQEVQRWKAEAERLEASlksqtmkeeeakvstdeHRRLHALEVEMRALSEKneasKRQAEEQRSQLEAEVQSLA 1226
Cdd:PRK03918 221 EELEKLEKEVKELEELKEEIEEL-----------------EKELESLEGSKRKLEEK----IRELEERIEELKKEIEELE 279
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 388856237 1227 QQNKDLEQqgLQRVKQLETKIGEL----ESQNRELEKQLSNVSNHASN 1270
Cdd:PRK03918 280 EKVKELKE--LKEKAEEYIKLSEFyeeyLDELREIEKRLSRLEEEING 325
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
860-1057 |
8.43e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 8.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 860 QRQLEQERSRDQDKEDALVNAKAE---VMAGQRA------LSDLQARLAAAQDEAKTLQLRAEAAEQTSEEHKRNAKDVQ 930
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKnglVDLSEEAklllqqLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 931 GetarqltqgSQDLASLRTELESSTAAKVAATTLASDRAKAIAELEVLLKQVCSELGAEkqarmkAEEQVAATQEQVLDS 1010
Cdd:COG3206 261 Q---------SPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQE------AQRILASLEAELEAL 325
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 388856237 1011 RSRADQADDKLRELELAVSAERRMMAERDELfhafERRLESAEQRLQ 1057
Cdd:COG3206 326 QAREASLQAQLAQLEARLAELPELEAELRRL----EREVEVARELYE 368
|
|
| PspA_IM30 |
pfam04012 |
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent ... |
860-1056 |
8.87e-03 |
|
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homolog in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma(54) containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator.
Pssm-ID: 461130 [Multi-domain] Cd Length: 215 Bit Score: 39.66 E-value: 8.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 860 QRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDlqaRLAAAQDEAKTLQLRAEAAEQTSEEhkrnakdvqgETARQLTQ 939
Cdd:pfam04012 24 EKMLEQAIRDMQSELVKARQALAQTIARQKQLER---RLEQQTEQAKKLEEKAQAALTKGNE----------ELAREALA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 940 GSQDLASLRTELEssTAAKVAATTLASDRaKAIAELEVLLkqvcSELGAEKQArMKAEEQVAATQEQVLDSR--SRADQA 1017
Cdd:pfam04012 91 EKKSLEKQAEALE--TQLAQQRSAVEQLR-KQLAALETKI----QQLKAKKNL-LKARLKAAKAQEAVQTSLgsLSTSSA 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 388856237 1018 DDKL---------RELELAVSAERRMMAERDELFHAFERRLESAEQRL 1056
Cdd:pfam04012 163 TDSFerieekieeREARADAAAELASAVDLDAKLEQAGIQMEVSEDVL 210
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
768-1026 |
9.18e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.66 E-value: 9.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 768 EKLRRLGEEVERKREMVRKLESDLTSARDAAKRREESSNRLTQQLEEQYRERSRAVEELRTLREQMNRFEESACQAQARA 847
Cdd:COG4372 101 EELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAE 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 848 VQAAIADVEQRMQRQLEQERSRDQDKEDALVNAKAEVMAGQRALSDLQARLAAAQDEAKTLQLRAEAAEQTSEEHKRNAK 927
Cdd:COG4372 181 AEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEI 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 928 DVQGETARQLTQGSQDLASLRTELEsSTAAKVAATTLASDRAKAIAELEVLLKQVCSELGAEKQARMKAEEQVAATQEQV 1007
Cdd:COG4372 261 EELELAILVEKDTEEEELEIAALEL-EALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAEL 339
|
250
....*....|....*....
gi 388856237 1008 LDSRSRADQADDKLRELEL 1026
Cdd:COG4372 340 ADLLQLLLVGLLDNDVLEL 358
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
861-1259 |
9.81e-03 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 40.78 E-value: 9.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 861 RQLEQER-SRDQDKEDALVNAKAEVMAGQ---RALSDLQARLAAAQDEAKTlqlrAEAAEQTSEEHKRNAKDVQGETA-- 934
Cdd:pfam05701 148 ESLRKEYaSLVSERDIAIKRAEEAVSASKeieKTVEELTIELIATKESLES----AHAAHLEAEEHRIGAALAREQDKln 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 935 --RQLTQGSQDLASLRTELESSTAAKV----AATTLASDRAKAIAELEVLLKQVCSELGAEKQARMKAEEQVAATQEQVL 1008
Cdd:pfam05701 224 weKELKQAEEELQRLNQQLLSAKDLKSkletASALLLDLKAELAAYMESKLKEEADGEGNEKKTSTSIQAALASAKKELE 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1009 DSRSRADQADDKLRELELAVSAERrmmAERDElfhaferrlESAEqrlqvqdkrcarmLGKLEGREEM--------DDLL 1080
Cdd:pfam05701 304 EVKANIEKAKDEVNCLRVAAASLR---SELEK---------EKAE-------------LASLRQREGMasiavsslEAEL 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1081 ERIKAGAAGV-AKKKTAGQDIAGLLSSLEThiGDLELELARANAQLPdtprdsvarsdvsatptvyHAELEASKQEVQRW 1159
Cdd:pfam05701 359 NRTKSEIALVqAKEKEAREKMVELPKQLQQ--AAQEAEEAKSLAQAA-------------------REELRKAKEEAEQA 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 388856237 1160 KAEAERLEASLKSqTMKEEEA-----KVSTDEHRRLHALEVEMRA-------------LSEKNEASKR--QAEEQRSQLE 1219
Cdd:pfam05701 418 KAAASTVESRLEA-VLKEIEAakaseKLALAAIKALQESESSAEStnqedsprgvtlsLEEYYELSKRahEAEELANKRV 496
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 388856237 1220 AEVQSLAQQNKDLEQQGLQRV----KQLETKIGELESQNRELEK 1259
Cdd:pfam05701 497 AEAVSQIEEAKESELRSLEKLeevnREMEERKEALKIALEKAEK 540
|
|
| |
