|
Name |
Accession |
Description |
Interval |
E-value |
| Uds1 |
pfam15456 |
Up-regulated During Septation; Uds1 is a domain family is found mostly in fungi, and is ... |
40-158 |
1.88e-35 |
|
Up-regulated During Septation; Uds1 is a domain family is found mostly in fungi, and is typically between 120 and 138 amino acids in length. The GO annotation for the S.pombe protein describes the protein as barrier septum assembly involved in cell cycle cytokinesis, GO:0071937. Many of the uncharacterized members are listed as being involucrin repeat proteins, but this can not be substantiated.
Pssm-ID: 434730 [Multi-domain] Cd Length: 119 Bit Score: 130.36 E-value: 1.88e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 40 LLVEQAIYDSADYEVLSFEEVESLKKEQATLTIKIDTMKQKLSMESKVRDAALSLSRLSSKRGRKnPTSPVAQEGEKKTD 119
Cdd:pfam15456 1 LLVETALLDSQEFEILSFEEVEELKKELRALDSRLEYLRRKLALETKLRDAARSLHRLYSSYLRS-PRNSKFSESLLKAE 79
|
90 100 110
....*....|....*....|....*....|....*....
gi 549052218 120 DEYAASCKKCDELASELQKLEARGMVIQRCLLQHSVGIL 158
Cdd:pfam15456 80 EELAESDRKIDELAQELEKLENRRAEVRRRLLEHTAAVL 118
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
348-645 |
2.33e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 2.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 348 TLRSERDRLRERSTQQE-QNVEEDMKIMQEELKSMESQVAHFSELLDQRETDLNSANALVQSLSEELKQKSE---ELKAA 423
Cdd:COG1196 217 ELKEELKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAeeyELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 424 MNQLETERSHAEAAAAAGAAVAgvaavaatsdstAALEKEIAALDQRLSDRERSLSELHNKYADMKQDRDMAREQLSASE 503
Cdd:COG1196 297 LARLEQDIARLEERRRELEERL------------EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 504 AAnkakFANLNAEIIDLQEARKAAEDANGHAIQHAKNAQQQLSAKDVEIQKLDKEVHELSGKLAELSMELVMAKAELDSS 583
Cdd:COG1196 365 EA----LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE 440
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 549052218 584 YGSKSERAAATAEAKAAAVALERAKRAPNAVNPGLKGQLEDMEKHNIELINEIVMLKNERAE 645
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
486-721 |
2.57e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.78 E-value: 2.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 486 ADMKQDRDMAREQLSASEAANKAKFANLNAEIIDLQEARKAAEDANGHAIQHAKNAQQQLSAKDVEIQKLDKEVHELSGK 565
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 566 LAELSMELvmaKAELDSSYGSKSERAAATAEAKAAAVALERAKRAPNAVNPGLKGQLEDMEKHNIELINEIVMLKNERAE 645
Cdd:COG4942 99 LEAQKEEL---AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 646 GANNEHHQQRARmlqKELDDMMKEHEIL---IRQNIDAEKAQ-GKLEKTVDVMKEKLEAMETALAEEKIRFLGAPPTQNR 721
Cdd:COG4942 176 LEALLAELEEER---AALEALKAERQKLlarLEKELAELAAElAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
344-585 |
1.21e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 1.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 344 TKMATLRSERDRLRERSTQQEQNVEE---DMKIMQEELKSMESQVAHFSELLDQRETDLNSANALVQSLSEELKQKSEEL 420
Cdd:COG1196 260 AELAELEAELEELRLELEELELELEEaqaEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 421 KAAMNQLETERshAEAAAAAGAAVAGVAAVAATSDSTAALEKEIAALDQRLSDRERSLSELHNKYAD---MKQDRDMARE 497
Cdd:COG1196 340 EELEEELEEAE--EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEleeAEEALLERLE 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 498 QLSASEAANKAKFANLNAEIIDLQEARKAAEDANGHAIQHAKNAQQQLSAKDVEIQKLDKEVHELSGKLAELSMELVMAK 577
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL 497
|
....*...
gi 549052218 578 AELDSSYG 585
Cdd:COG1196 498 EAEADYEG 505
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
329-774 |
1.27e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.00 E-value: 1.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 329 AYSASAFSSKVQKMLTKMATLRSERDRLRERSTQQEQNVEEDMKIMQEELKSMESQVAHFSEllDQRETDLNSANALVQS 408
Cdd:PTZ00121 1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE--DKKKADELKKAAAAKK 1418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 409 LSEELKQKSEELKAA---MNQLETERSHAEAAAAAGAAVAGVAAVAATSDSTAALEKEIAALDQRLSDRERSLSELHNKY 485
Cdd:PTZ00121 1419 KADEAKKKAEEKKKAdeaKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 486 ADMKQDRDMAR---EQLSASEAANKAKFANLNAEIIDLQEARKAAEDANGHAIQHAKNAQQQLSAKDVEIQKLDKEVHEL 562
Cdd:PTZ00121 1499 ADEAKKAAEAKkkaDEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNM 1578
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 563 SGKLAELSMELVMAKAE-----LDSSYGSKSERAAATAEAKAAAVALERAKRAPNAVNPGLKGQLEDMEK-HNIELINEI 636
Cdd:PTZ00121 1579 ALRKAEEAKKAEEARIEevmklYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKaEELKKAEEE 1658
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 637 VMLKNERaEGANNEHHQQRARMLQKELDDMMKEHEILIRQNIDAEKAQgKLEKTVDVMKEKLEAMETALAEEKIRFLGAP 716
Cdd:PTZ00121 1659 NKIKAAE-EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE-ELKKKEAEEKKKAEELKKAEEENKIKAEEAK 1736
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 549052218 717 PTQNRNGSigDARSPGFRAVDATSIQVLKTEFKKIMRDMRADQYRILKA---SEEERRRLE 774
Cdd:PTZ00121 1737 KEAEEDKK--KAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEeldEEDEKRRME 1795
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
366-680 |
5.32e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 5.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 366 NVEEDMKIMQEELKSMESQVAHFSELLDQRETDLNSANALVQSLSEELKQKSEELKAAMNQLETERSHAEAAAAAGaava 445
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL---- 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 446 gvaavaatsdstAALEKEIAALDQRLSDRERSLSELHNKYADMKQDRDMAREQLSASEA---ANKAKFANLNAEIIDLQE 522
Cdd:TIGR02168 757 ------------TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREaldELRAELTLLNEEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 523 ARKAAEDANGHAIQHAKNAQQQLSAKDVEIQKLDKEVHELSGKLAELSMELVMAKAELDSSYGSKSERAAATAEAKAAAV 602
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 549052218 603 ALERAKRAPNAVNPGLKGQLEDMEKHNIELINEIVMLKNERAEGANNEHHQQRARMLQKELDDMMKEHEI-LIRQNIDA 680
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLkRLENKIKE 983
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
349-559 |
1.56e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 55.02 E-value: 1.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 349 LRSERDRLRERSTQQEQNVEEDMKIMQEELKSMESQVAHFselldQRETDLNSANALVQSLSEELKQKSEELKAAMNQLE 428
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEF-----RQKNGLVDLSEEAKLLLQQLSELESQLAEARAELA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 429 TERSHAEAAAAAGAAVAGVAAVAATSDSTAALEKEIAALDQRLSDRERSLSELHNKYADMKQDRDMAREQLsasEAANKA 508
Cdd:COG3206 237 EAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQL---QQEAQR 313
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 549052218 509 KFANLNAEIIDLQEARKAAEDanghAIQHAKNAQQQLSAKDVEIQKLDKEV 559
Cdd:COG3206 314 ILASLEAELEALQAREASLQA----QLAQLEARLAELPELEAELRRLEREV 360
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
330-569 |
2.82e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 2.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 330 YSASAFSSKVQKMLTKMATLRSERDRLRERSTQQEQNVEE---DMKIMQEELKSMESQVAHFSELLDQRETDLNSANALV 406
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEaeeELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL 812
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 407 QSLSEELKQKSEELKAAMNQLETERSHAEAAAAAGAAvagvaavaaTSDSTAALEKEIAALDQRLSDRERSLSELHNKYA 486
Cdd:TIGR02168 813 TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE---------LSEDIESLAAEIEELEELIEELESELEALLNERA 883
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 487 DMKQDRDMAREQLSASEAANKAKFANLNAEIIDLQEARKAAEDANGH---AIQHAKNAQQQLSAK--------------- 548
Cdd:TIGR02168 884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRlegLEVRIDNLQERLSEEysltleeaealenki 963
|
250 260
....*....|....*....|.
gi 549052218 549 DVEIQKLDKEVHELSGKLAEL 569
Cdd:TIGR02168 964 EDDEEEARRRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
407-713 |
3.94e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 3.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 407 QSLSEELKQKSEELKAA-MNQLETERshaeaaaaagaavagvaavaatsdstAALEKEIAALDQRLSDRERSLSELHNKY 485
Cdd:COG1196 216 RELKEELKELEAELLLLkLRELEAEL--------------------------EELEAELEELEAELEELEAELAELEAEL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 486 ADMKQDRDMAREQLSASeaanKAKFANLNAEIIDLQEARKAAEDANGHAIQHAKNAQQQLSAKDVEIQKLDKEVHELSGK 565
Cdd:COG1196 270 EELRLELEELELELEEA----QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 566 LAELSMELVMAKAELDSSYGSKSERAAATAEAKAAAVALERAKRAPNAVNPGLKGQLEDMEKHNIELINEIVMLKNERAE 645
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE 425
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 549052218 646 GANNEHHQQRARM-LQKELDDMMKEHEILIRQNIDAEKAQGKLEKTVDVMKEKLEAMETALAEEKIRFL 713
Cdd:COG1196 426 LEEALAELEEEEEeEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
410-707 |
1.18e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 410 SEELKQKSEELKAAMNQLETERSHAE------AAAAAGAAVAGVAAVAATSDSTAALEKEIAALDQRLSDRERSLSELHN 483
Cdd:TIGR02169 186 IERLDLIIDEKRQQLERLRREREKAEryqallKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEK 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 484 KYADMKQDRDMAREQLSA----SEAANKAKFANLNAEIIDLQEARKAAEdanghaiQHAKNAQQQLSAKDVEIQKLDKEV 559
Cdd:TIGR02169 266 RLEEIEQLLEELNKKIKDlgeeEQLRVKEKIGELEAEIASLERSIAEKE-------RELEDAEERLAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 560 HELSGKLAELSMELVMAKAELDSsygSKSERAAATAEAKAAAVALERAKRAPNAVNPGLKGQLEDMEKHNIELINEIVML 639
Cdd:TIGR02169 339 EELEREIEEERKRRDKLTEEYAE---LKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 549052218 640 KNERAEGANNEHHQQRARMLQKELDDMMKEHEILIrqnidaEKAQGKLEKTVDVM---KEKLEAMETALAE 707
Cdd:TIGR02169 416 QRLSEELADLNAAIAGIEAKINELEEEKEDKALEI------KKQEWKLEQLAADLskyEQELYDLKEEYDR 480
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
280-569 |
2.12e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 2.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 280 AAAQELERIDGVLSAVWDMIASHEEEVKEIkmmqpdnddypESDFEDLPAYSASAfSSKVQKMLTKMATLRSERDRL--- 356
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQEL-----------EEKLEELRLEVSEL-EEEIEELQKELYALANEISRLeqq 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 357 RERSTQQEQNVEEDMKIMQEELKSMESQVAHFSELLDQRETDLNSANALVQSLSEELKQKSEELKAAMNQLETERSHAEA 436
Cdd:TIGR02168 304 KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 437 AAAAGAAVAGVAavaatsdstAALEKEIAALDQRLSDRERSLSELHNkyadmkqdrdmarEQLSASEAANKAKFANLNAE 516
Cdd:TIGR02168 384 LRSKVAQLELQI---------ASLNNEIERLEARLERLEDRRERLQQ-------------EIEELLKKLEEAELKELQAE 441
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 549052218 517 IIDLQEARKAAEDANGHAIQHAKNAQQQLSAKDVEIQKLDKEVHELSGKLAEL 569
Cdd:TIGR02168 442 LEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
338-528 |
4.67e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.77 E-value: 4.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 338 KVQKMLTKMATLRSERDRLRERstqqeqnveedMKIMQEELKSMESQVAHFSELLDQRETDLNSANALVQSLSEELKQKS 417
Cdd:COG1579 4 EDLRALLDLQELDSELDRLEHR-----------LKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 418 EELKAAMNQLETERSHAEAAaaagaavagvaavaatsdstaALEKEIAALDQRLSDRERSLSELH-------NKYADMKQ 490
Cdd:COG1579 73 ARIKKYEEQLGNVRNNKEYE---------------------ALQKEIESLKRRISDLEDEILELMerieeleEELAELEA 131
|
170 180 190
....*....|....*....|....*....|....*...
gi 549052218 491 DRDMAREQLSASEAANKAKFANLNAEIIDLQEARKAAE 528
Cdd:COG1579 132 ELAELEAELEEKKAELDEELAELEAELEELEAEREELA 169
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
345-586 |
2.11e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 2.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 345 KMATLRSERDRLRERSTQQEQNVEEdmkiMQEELKSMESQVAHFSELLDQRETDLNsanalVQSLSEELKQKSEELKAAm 424
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEA----LEAELDALQERREALQRLAEYSWDEID-----VASAEREIAELEAELERL- 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 425 nqletershaeaaaaagaavagvaavAATSDSTAALEKEIAALDQRLSDRERSLSELHNKYADMKQDRDMAREQLSASEA 504
Cdd:COG4913 681 --------------------------DASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQD 734
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 505 ANKAKFANLNAEIIDLQEARKAAEDANGHAIQHAKNAQQQLsakDVEIQKLDKEVHELSGKLAELSMELVMAKAELDSSY 584
Cdd:COG4913 735 RLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERI---DALRARLNRAEEELERAMRAFNREWPAETADLDADL 811
|
..
gi 549052218 585 GS 586
Cdd:COG4913 812 ES 813
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
339-580 |
5.47e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 5.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 339 VQKMLTKMATLRSERDRLRErsTQQEQNVEEDMKIMQEELKSMESQVAHFSELLDQRETDLNS-ANALVQSLSEELKQKS 417
Cdd:COG4913 227 ADALVEHFDDLERAHEALED--AREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQrRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 418 EELKAAMNQLETERSHAEAAAAAGAAVAGVAAvaatSDSTAALEKEIAALDQRLSDRERSLSELHNKYADMKqdrdmarE 497
Cdd:COG4913 305 ARLEAELERLEARLDALREELDELEAQIRGNG----GDRLEQLEREIERLERELEERERRRARLEALLAALG-------L 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 498 QLSASEAANKAKFANLNAEIIDLQEARKAAEDANGHAIQHAKNAQQQLSAKDVEIQKL-------DKEVHELsgkLAELS 570
Cdd:COG4913 374 PLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLerrksniPARLLAL---RDALA 450
|
250
....*....|
gi 549052218 571 MELVMAKAEL 580
Cdd:COG4913 451 EALGLDEAEL 460
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
347-707 |
5.48e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 46.74 E-value: 5.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 347 ATLRSERDRLRERSTQQEQNVEEDMKI---MQEELKSMESQVAHFSELLDQRETDLNSANALVQSLSEELKQKS---EEL 420
Cdd:pfam10174 341 AILQTEVDALRLRLEEKESFLNKKTKQlqdLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDkqlAGL 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 421 KAAMNQLETERSHAEAAAAAGAavagvaavaatsDSTAALEKEIAALDQRlsdRERSLSELHNKYADMKQDRDMAREQLS 500
Cdd:pfam10174 421 KERVKSLQTDSSNTDTALTTLE------------EALSEKERIIERLKEQ---REREDRERLEELESLKKENKDLKEKVS 485
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 501 ASEAANKAKfanlNAEIIDLQEarkaaedanghaiqHAKNAQQQLSAKDVEIQKLDKEVHELSGKLAELSMELVMAKAEL 580
Cdd:pfam10174 486 ALQPELTEK----ESSLIDLKE--------------HASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAE 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 581 DSSYGSKSERAAATAEAKAAAVALERAKRAPNAVNPgLKGQLEDME--KHNIE-LINEI-----VMLKNERAEGANNEHH 652
Cdd:pfam10174 548 EAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVER-LLGILREVEneKNDKDkKIAELesltlRQMKEQNKKVANIKHG 626
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 549052218 653 QQ-RARMLQKELDDMMKEHEILIR--QNIDAEKAQGKLEKT---VDVMKEKLEAMETALAE 707
Cdd:pfam10174 627 QQeMKKKGAQLLEEARRREDNLADnsQQLQLEELMGALEKTrqeLDATKARLSSTQQSLAE 687
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
221-562 |
1.51e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.43 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 221 AKLEEVNEQISALLRESgndEVPEADGRSLDDQLSFLENNIQFLRQfppTAQRDPGDSSAAAQELERIDGVLSAVWDMIA 300
Cdd:TIGR02168 698 KALAELRKELEELEEEL---EQLRKELEELSRQISALRKDLARLEA---EVEQLEERIAQLSKELTELEAEIEELEERLE 771
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 301 SHEEEVKEIKMMQPDNDDYPESDFEDLPA--YSASAFSSKVQKMLTKMATLRSERDRLRERS---TQQEQNVEEDMKIMQ 375
Cdd:TIGR02168 772 EAEEELAEAEAEIEELEAQIEQLKEELKAlrEALDELRAELTLLNEEAANLRERLESLERRIaatERRLEDLEEQIEELS 851
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 376 EELKSMESQVAHFSELLDQRETDLNSANALVQSLSEELKQKSEELKAAMNQLETERSHAEAAAAAGAAVAGVAAVAATSd 455
Cdd:TIGR02168 852 EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR- 930
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 456 sTAALEKEIAALDQRLSDR-ERSLSELHNKYADMKQDRDMAREQLSASEAANKA-----------------KFANLNAEI 517
Cdd:TIGR02168 931 -LEGLEVRIDNLQERLSEEySLTLEEAEALENKIEDDEEEARRRLKRLENKIKElgpvnlaaieeyeelkeRYDFLTAQK 1009
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 549052218 518 IDLQEARKAAEDAnghaiqhaknaqqqlsakdveIQKLDKEVHEL 562
Cdd:TIGR02168 1010 EDLTEAKETLEEA---------------------IEEIDREARER 1033
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
389-622 |
1.67e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 389 SELLDQRETDLNSANALVQSLSEELKQKSEELKAAMNQLETershaeaaaAAGAAVAGVAAVAATSDSTAALEKEIAALD 468
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAA---------LERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 469 QRLSDRERSLSELHNKYADMKQDRDMAREQ------LSASEAANKAKFA--------NLNAEIIDLQEARKAAEDANGHA 534
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRQpplallLSPEDFLDAVRRLqylkylapARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 535 IQHAKNAQQQLSAKDVEIQKLDKEVHELSGKLAELSMELVMAKAELDSSygSKSERAAATAEAKAAAVALERAKRAPNAV 614
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAEL--QQEAEELEALIARLEAEAAAAAERTPAAG 247
|
....*...
gi 549052218 615 NPGLKGQL 622
Cdd:COG4942 248 FAALKGKL 255
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
344-783 |
2.89e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 344 TKMATLRSERDRLRERSTQQEQNVEEDMKIMQEELKSMESQVAHFSELLDQRETDLNSANALVQSLsEELKQKSEELKAA 423
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL-EELEEAEEALLER 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 424 MNQLETERSHAEAAAAAGAAVAGVAAVAATSDST--AALEKEIAALDQRLSDRERSLSELHNKYADMKQDRDMAREQLSA 501
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEEEEEEALEEAAEeeAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 502 SEAANK--------AKFANLNA-----------EIIDLQEARKAAEDANGHAIQHAKNAQQQLSAKDVEIQK-------- 554
Cdd:COG1196 496 LLEAEAdyegflegVKAALLLAglrglagavavLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKaakagrat 575
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 555 ---LDKEVHELSGKLAELSMELVMAKAELDSSYGSKSERAAATAEAKAAAVALERAKRAPNAVNPGLKGQLEDMEKHNIE 631
Cdd:COG1196 576 flpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEG 655
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 632 LINEIVMlknERAEGANNEHHQQRARMLQKELDDMMKEHEILIRQNIDAEKAQGKLEKTVDVMKEKLEAMETALAEEKIR 711
Cdd:COG1196 656 GSAGGSL---TGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEA 732
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 712 FLGAPPTQNRNGSIGDARSPGFRAVDATSIQVLKTEFKKIMRDMRA---------DQYRILKAS-----------EEERR 771
Cdd:COG1196 733 EREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAlgpvnllaiEEYEELEERydflseqredlEEARE 812
|
490
....*....|..
gi 549052218 772 RLENMVRAMRKE 783
Cdd:COG1196 813 TLEEAIEEIDRE 824
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
346-570 |
4.43e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 4.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 346 MATLRSERDRLRERSTQQEQNVEEDMKIMQEELKSMESQVAHFSELLdqretdlnsanalvqslsEELKQKSEELKAAMN 425
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQ------------------EELEELEEELEELEA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 426 QLETERSHAEAAAAAGAAVAGVAAVAATSDSTAALEKEIAALDQR---LSDRERSLSELHNKYADMKQDRDMAREQLSas 502
Cdd:COG4717 110 ELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERleeLRELEEELEELEAELAELQEELEELLEQLS-- 187
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 503 eAANKAKFANLNAEIIDLQEARKAAEDANGHAIQHAKNAQQQLSA--KDVEIQKLDKEVHELSGKLAELS 570
Cdd:COG4717 188 -LATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQleNELEAAALEERLKEARLLLLIAA 256
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
337-585 |
5.64e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 5.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 337 SKVQKMLTKMATLRSERDRLRERSTQQE----QNVEED--MKIMQEELKSMESQVAHFSELLD-------QRETDLNSAN 403
Cdd:pfam15921 524 SRVDLKLQELQHLKNEGDHLRNVQTECEalklQMAEKDkvIEILRQQIENMTQLVGQHGRTAGamqvekaQLEKEINDRR 603
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 404 ALVQS---LSEELKQKSEELKAAMNQLETERshaeaaaaagaavagVAAVAATSDSTAALEKEIAALDQRLSDRERSLSE 480
Cdd:pfam15921 604 LELQEfkiLKDKKDAKIRELEARVSDLELEK---------------VKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNE 668
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 481 LHN---KYADMKQDRDMAREQLSASEAANKAKFANLNAEIIDLQEARKAAEDANGHAIQHAKNAQQQLSAKDVEIQKL-- 555
Cdd:pfam15921 669 LNSlseDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALqs 748
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 549052218 556 ------------DKEVHELSGKLAELSMELVMAKAELDSSYG 585
Cdd:pfam15921 749 kiqfleeamtnaNKEKHFLKEEKNKLSQELSTVATEKNKMAG 790
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
345-582 |
5.80e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.49 E-value: 5.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 345 KMATLRSERDRLRERSTQQEQNVE--EDMKIMQEELKSMESQVAHFSELLDQRETDLnsanalvqslsEELKQKSEELKA 422
Cdd:PRK02224 476 RVEELEAELEDLEEEVEEVEERLEraEDLVEAEDRIERLEERREDLEELIAERRETI-----------EEKRERAEELRE 544
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 423 AMNQLETERSHAEAAAAAGAAVAGVaavaaTSDSTAALEKEIAALDQRLsDRERSLSELHNKYADMKQDRDMAREQLSAS 502
Cdd:PRK02224 545 RAAELEAEAEEKREAAAEAEEEAEE-----AREEVAELNSKLAELKERI-ESLERIRTLLAAIADAEDEIERLREKREAL 618
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 503 EAAN---KAKFANLNAEIIDLqearkaAEDANGHAIQHAKNAQQQLSAKdveIQKLDKEVHELSGKLAELSMELVMAKAE 579
Cdd:PRK02224 619 AELNderRERLAEKRERKREL------EAEFDEARIEEAREDKERAEEY---LEQVEEKLDELREERDDLQAEIGAVENE 689
|
...
gi 549052218 580 LDS 582
Cdd:PRK02224 690 LEE 692
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
357-583 |
7.64e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 7.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 357 RERSTQQEQNVEEDMKIMQEELKSMESQVAHFSELLDQRETDLNSANALVQSLSEELKQKSEELKAA---MNQLETERSH 433
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELekeIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 434 AEAAAAAGAAVAGVAAVAAT------SDSTAALEKEIAALDQRLSDRERSLSELHNKyadmkqdrdmaREQLSASEAANK 507
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPlalllsPEDFLDAVRRLQYLKYLAPARREQAEELRAD-----------LAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 549052218 508 AKFANLNAEIIDLQEARKAAEDANGHAIQHAKNAQQQLSAKDVEIQKLDKEVHELSGKLAELSMELVMAKAELDSS 583
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
337-700 |
1.03e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.20 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 337 SKVQKMLTKMATLRSERDRLRERSTQQEQNVEEDMKIMQEELKSMESQVAHFSELLDQRETDLNSANALVQSLSEELKQK 416
Cdd:COG4372 6 EKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 417 SEELKAAmnQLETERSHAEAAAAAGAAVAGVAAVAATSDSTAALEKEIAALDQRLSDRERSLSELHNKYADMKQDRDMAR 496
Cdd:COG4372 86 NEQLQAA--QAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQ 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 497 EQLSASEAANKAKFANLNAEIID--LQEARKAAEDANGHAIQHAKNAQQQLSAKDVEIQKLDKEVHELSGKLAELSMELV 574
Cdd:COG4372 164 EELAALEQELQALSEAEAEQALDelLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALE 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 575 MAKAELDSSYGSKSERAAATAEAKAAAVALERAKRAPNAVNPGLKGQLEDMEKHNIELINEIVMLKNERAEGANNEHHQQ 654
Cdd:COG4372 244 LEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLE 323
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 549052218 655 RARMLQKELDDMMKEHEILIRQNIDAEKAQGKLEKTVDVMKEKLEA 700
Cdd:COG4372 324 LAKKLELALAILLAELADLLQLLLVGLLDNDVLELLSKGAEAGVAD 369
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
349-580 |
2.06e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.42 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 349 LRSERDRLRERSTQQEQNVEEDMKIMQEELKSMESQVAHFSELLDQR----------ETDLNSANALVQSLSEELKQKSE 418
Cdd:pfam07888 78 LESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRaahearirelEEDIKTLTQRVLERETELERMKE 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 419 ELKAAMNQL---ETER---------SHAEAAAAAGAAVAGVAAVAATSDSTAALEKEIAALDQRLSDRERSLSELHNKYA 486
Cdd:pfam07888 158 RAKKAGAQRkeeEAERkqlqaklqqTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLE 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 487 DMKQDRDMA----------REQLSASEAANKAKFANLN------AEI-IDLQEARKAAEDANGHAIQHAKNAQQQLSAKD 549
Cdd:pfam07888 238 ELRSLQERLnaserkveglGEELSSMAAQRDRTQAELHqarlqaAQLtLQLADASLALREGRARWAQERETLQQSAEADK 317
|
250 260 270
....*....|....*....|....*....|.
gi 549052218 550 VEIQKLDKEVHELSGKLAELSMELVMAKAEL 580
Cdd:pfam07888 318 DRIEKLSAELQRLEERLQEERMEREKLEVEL 348
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
357-486 |
4.41e-03 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 40.62 E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 357 RERSTQQEQNVEEDMKIMQEELKSMESQVAHFSELLDQRETDLNSANALVQSLSEELKQKSEELKAAMNQLET-ERSHAE 435
Cdd:PRK00106 78 KEEARKYREEIEQEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKlEEQKKA 157
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 549052218 436 AAAAAGAAVAGVAAVAATSDSTAALEKEIAAldqRLSDRERSLSELHNKYA 486
Cdd:PRK00106 158 ELERVAALSQAEAREIILAETENKLTHEIAT---RIREAEREVKDRSDKMA 205
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
304-787 |
4.61e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 4.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 304 EEVKEIKMMQPDNDDYPESDFEDLPAYSASAFSSKVQKMLTKMATLRSERDRLRERSTQQEQnveedmKIMQEELKSMEs 383
Cdd:PTZ00121 1227 EAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEE------KKKADEAKKAE- 1299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 384 qvahfsellDQRETDLNSANALVQSLSEELKQKSEELK----AAMNQLETERSHAEAAAAAGAAVAGVAAVAATSDSTAA 459
Cdd:PTZ00121 1300 ---------EKKKADEAKKKAEEAKKADEAKKKAEEAKkkadAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAE 1370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 460 L----EKEIAALDQRLSDRERSLSELHNKyadMKQDRDMAREQLSASEAANKAKFANLNA-EIIDLQEARKAAEDANgHA 534
Cdd:PTZ00121 1371 KkkeeAKKKADAAKKKAEEKKKADEAKKK---AEEDKKKADELKKAAAAKKKADEAKKKAeEKKKADEAKKKAEEAK-KA 1446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 535 IQHAKNAQQQLSAKDVEIQKLDKEVHELSGKLAELS--MELVMAKAELDSSYGSKSERAAATAEAKAAAVALERAKRAPN 612
Cdd:PTZ00121 1447 DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAkkADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADE 1526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 613 AVNPGLKGQLEDM----EKHNIELINEIVMLKN----ERAEGANNEHHQQRARMLQKELDDMMKEHEILIRQNIDAEKAQ 684
Cdd:PTZ00121 1527 AKKAEEAKKADEAkkaeEKKKADELKKAEELKKaeekKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKK 1606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 685 GKLEKTVDVMKEKLEAMETALAEEKIRflgaPPTQNRNGSIGDARSPGFRAVDATSIQVLKTEFKKIMRDMRADQYRILK 764
Cdd:PTZ00121 1607 MKAEEAKKAEEAKIKAEELKKAEEEKK----KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682
|
490 500
....*....|....*....|....*..
gi 549052218 765 ASEEERRRLENMVR----AMRKEQLKR 787
Cdd:PTZ00121 1683 AEEDEKKAAEALKKeaeeAKKAEELKK 1709
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
221-562 |
5.29e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 5.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 221 AKLEEVNEQISAL--LRESGNDEVPEADGRsLDDQLSFLENNIQFLRQFPPTAQRDPGDSSAAAQELERIDGVLSAVWDM 298
Cdd:TIGR02169 674 AELQRLRERLEGLkrELSSLQSELRRIENR-LDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 299 IASHEEEVKEIKMMQPDNDDYPESDFEDLPAYSASAFSSKVQKMLTKMATLRSERDRLRERSTQQEQNVEE---DMKIMQ 375
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRltlEKEYLE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 376 EELKSMESQVahfsELLDQRETDLNSANALVQSLSEELKQKSEELKAAMNQLETERSHAEAAAAAgaavagvaavaatsd 455
Cdd:TIGR02169 833 KEIQELQEQR----IDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDE--------------- 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 456 staaLEKEIAALDQRLSDRERSLSELHNKYADMKQDRDMAREQLSA---------SEAANKAKFANLNAEIIDLQEARKA 526
Cdd:TIGR02169 894 ----LEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEiedpkgedeEIPEEELSLEDVQAELQRVEEEIRA 969
|
330 340 350
....*....|....*....|....*....|....*.
gi 549052218 527 AEDANGHAIQHAKNAQQQLSAKDVEIQKLDKEVHEL 562
Cdd:TIGR02169 970 LEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAI 1005
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
354-617 |
6.33e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 6.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 354 DRLRERSTQQEQNVEEDMKIMQEELKSMESQVAHFSELLDQRETDLNSANALVQSLSEELKQKSEELKAAMNQLEtersh 433
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG----- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 434 aeaaaaagaavAGVAAVAATSDSTAALEKEIAALD-QRLSDRERSLSELhnkyadMKQDRDMAREQLSASEAANKAKfAN 512
Cdd:COG3883 90 -----------ERARALYRSGGSVSYLDVLLGSESfSDFLDRLSALSKI------ADADADLLEELKADKAELEAKK-AE 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 549052218 513 LNAEIIDLQEARKAAEDAnghaiqhAKNAQQQLSAKDVEIQKLDKEVHELSGKLAELSMELVMAKAELDSSYGSKSERAA 592
Cdd:COG3883 152 LEAKLAELEALKAELEAA-------KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAA 224
|
250 260
....*....|....*....|....*
gi 549052218 593 ATAEAKAAAVALERAKRAPNAVNPG 617
Cdd:COG3883 225 AAAAAAAAAAAAAAAAAAAASAAGA 249
|
|
|