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Conserved domains on  [gi|524609007|emb|CDD26531|]
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putative uncharacterized protein [Clostridium sp. CAG:452]

Protein Classification

GerM family protein( domain architecture ID 11475057)

GerM family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GerM COG5401
Spore germination protein GerM [Cell cycle control, cell division, chromosome partitioning];
42-183 6.84e-29

Spore germination protein GerM [Cell cycle control, cell division, chromosome partitioning];


:

Pssm-ID: 444160 [Multi-domain]  Cd Length: 163  Bit Score: 105.09  E-value: 6.84e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 524609007  42 PQEEITDEQLRQtiITLYFFNIETGNIMPEARKIDAKEliKEPYKVLIELLINGPKSE-KLVKLIPDRTKLNKIEIKNDC 120
Cdd:COG5401   28 AQPQTSATETVT--VTLYFLDEDGGYLVPETREVPKSD--EEVAKAALEELLAGPTEEnGLSSTIPEGTKLLSVKVKDGT 103

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 524609007 121 IYIDFSNEFINGQklGKEQEELIIKSIVNTVTELKEINSVKILIDGKENQEFPDKeINFKEPF 183
Cdd:COG5401  104 AYVDLSKEFTEGG--GSTGEQLRLYQIVNTLTEFPGVKKVQILVEGKPLEVLGGG-LDLSQPL 163
 
Name Accession Description Interval E-value
GerM COG5401
Spore germination protein GerM [Cell cycle control, cell division, chromosome partitioning];
42-183 6.84e-29

Spore germination protein GerM [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444160 [Multi-domain]  Cd Length: 163  Bit Score: 105.09  E-value: 6.84e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 524609007  42 PQEEITDEQLRQtiITLYFFNIETGNIMPEARKIDAKEliKEPYKVLIELLINGPKSE-KLVKLIPDRTKLNKIEIKNDC 120
Cdd:COG5401   28 AQPQTSATETVT--VTLYFLDEDGGYLVPETREVPKSD--EEVAKAALEELLAGPTEEnGLSSTIPEGTKLLSVKVKDGT 103

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 524609007 121 IYIDFSNEFINGQklGKEQEELIIKSIVNTVTELKEINSVKILIDGKENQEFPDKeINFKEPF 183
Cdd:COG5401  104 AYVDLSKEFTEGG--GSTGEQLRLYQIVNTLTEFPGVKKVQILVEGKPLEVLGGG-LDLSQPL 163
Germane pfam10646
Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues ...
 57-169 2.41e-24

Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. The domain is found in a number of different bacterial species both alone and in association with other domains such as Amidase_3 pfam01520, Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.


Pssm-ID: 463171 [Multi-domain]  Cd Length: 112  Bit Score: 91.71  E-value: 2.41e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 524609007   57 TLYFFNIETGNIMPEARKIDAKELiKEPYKVLIELLINGP-KSEKLVKLIPDRTKLNKIEIKND-CIYIDFSNEFINGqk 134
Cdd:pfam10646   1 TLYFLDPDGTKLVPDGRLVPETTD-ESLAKAALEALLKGPsLDPGLRSALPEGTKLLSVTVKDGgTATVDLSKEFEAG-- 77

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 524609007  135 lGKEQEELIIKSIVNTVTELKEINSVKILIDGKEN 169
Cdd:pfam10646  78 -SSAERELALAQIVNTLTQLPGVKKVQILVDGKPL 111
Germane smart00909
Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues ...
 86-167 2.66e-18

Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. The domain is found in a number of different bacterial species both alone and in association with other domains such as Amidase_3 pfam01520 Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.


Pssm-ID: 214905 [Multi-domain]  Cd Length: 84  Bit Score: 75.42  E-value: 2.66e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 524609007    86 KVLIELLINGP-KSEKLVKLIPDRTKLNKIEIKNDCI-YIDFSNEFINgQKLGKEQEELIIKSIVNTVTELKEINSVKIL 163
Cdd:smart00909   2 TAALEELLKGPsPAPGLLSVLPPGTKLLGVSLSGDGTaTVDLSSEFGN-LSAGSEAEQLLLAQLVLTLTEFPGVDKVQIL 80


                   ....
gi 524609007   164 IDGK 167
Cdd:smart00909  81 VDGK 84
 
Name Accession Description Interval E-value
GerM COG5401
Spore germination protein GerM [Cell cycle control, cell division, chromosome partitioning];
42-183 6.84e-29

Spore germination protein GerM [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444160 [Multi-domain]  Cd Length: 163  Bit Score: 105.09  E-value: 6.84e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 524609007  42 PQEEITDEQLRQtiITLYFFNIETGNIMPEARKIDAKEliKEPYKVLIELLINGPKSE-KLVKLIPDRTKLNKIEIKNDC 120
Cdd:COG5401   28 AQPQTSATETVT--VTLYFLDEDGGYLVPETREVPKSD--EEVAKAALEELLAGPTEEnGLSSTIPEGTKLLSVKVKDGT 103

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 524609007 121 IYIDFSNEFINGQklGKEQEELIIKSIVNTVTELKEINSVKILIDGKENQEFPDKeINFKEPF 183
Cdd:COG5401  104 AYVDLSKEFTEGG--GSTGEQLRLYQIVNTLTEFPGVKKVQILVEGKPLEVLGGG-LDLSQPL 163
Germane pfam10646
Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues ...
 57-169 2.41e-24

Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. The domain is found in a number of different bacterial species both alone and in association with other domains such as Amidase_3 pfam01520, Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.


Pssm-ID: 463171 [Multi-domain]  Cd Length: 112  Bit Score: 91.71  E-value: 2.41e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 524609007   57 TLYFFNIETGNIMPEARKIDAKELiKEPYKVLIELLINGP-KSEKLVKLIPDRTKLNKIEIKND-CIYIDFSNEFINGqk 134
Cdd:pfam10646   1 TLYFLDPDGTKLVPDGRLVPETTD-ESLAKAALEALLKGPsLDPGLRSALPEGTKLLSVTVKDGgTATVDLSKEFEAG-- 77

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 524609007  135 lGKEQEELIIKSIVNTVTELKEINSVKILIDGKEN 169
Cdd:pfam10646  78 -SSAERELALAQIVNTLTQLPGVKKVQILVDGKPL 111
Germane smart00909
Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues ...
 86-167 2.66e-18

Sporulation and spore germination; The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. The domain is found in a number of different bacterial species both alone and in association with other domains such as Amidase_3 pfam01520 Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.


Pssm-ID: 214905 [Multi-domain]  Cd Length: 84  Bit Score: 75.42  E-value: 2.66e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 524609007    86 KVLIELLINGP-KSEKLVKLIPDRTKLNKIEIKNDCI-YIDFSNEFINgQKLGKEQEELIIKSIVNTVTELKEINSVKIL 163
Cdd:smart00909   2 TAALEELLKGPsPAPGLLSVLPPGTKLLGVSLSGDGTaTVDLSSEFGN-LSAGSEAEQLLLAQLVLTLTEFPGVDKVQIL 80


                   ....
gi 524609007   164 IDGK 167
Cdd:smart00909  81 VDGK 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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