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Conserved domains on  [gi|290559895|gb|EFD93217|]
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hypothetical protein BJBARM5_0008 [Candidatus Parvarchaeum acidophilus ARMAN-5]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S17e super family cl00610
Ribosomal S17;
1-60 1.36e-12

Ribosomal S17;


The actual alignment was detected with superfamily member COG1383:

Pssm-ID: 469841  Cd Length: 63  Bit Score: 56.02  E-value: 1.36e-12
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 290559895  1 MGRIRGKEIRNATIEVLRTNKNLFNDDFESNKLALNTLVSAQ-KRSRNKVAGFITKLAKKK 60
Cdd:COG1383   1 MGNIRPTYIKRIARELLEKYPDLFTEDFEENKKLVEELTDVEsKRVRNRIAGYITRKVKKR 61
 
Name Accession Description Interval E-value
RPS17A COG1383
Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-60 1.36e-12

Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 440993  Cd Length: 63  Bit Score: 56.02  E-value: 1.36e-12
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 290559895  1 MGRIRGKEIRNATIEVLRTNKNLFNDDFESNKLALNTLVSAQ-KRSRNKVAGFITKLAKKK 60
Cdd:COG1383   1 MGNIRPTYIKRIARELLEKYPDLFTEDFEENKKLVEELTDVEsKRVRNRIAGYITRKVKKR 61
rps17E PRK01151
30S ribosomal protein S17e; Validated
 2-58 1.41e-09

30S ribosomal protein S17e; Validated


Pssm-ID: 179234  Cd Length: 58  Bit Score: 48.33  E-value: 1.41e-09
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 290559895  2 GRIRGKEIRNATIEVLRTNKNLFNDDFESNKLALNTLVSAQ-KRSRNKVAGFITKLAK 58
Cdd:PRK01151  1 GNIRPKYIKRTAEELLEKYPDLFTTDFETNKKLVEELTNIEsKKVRNRIAGYITRKVK 58
Ribosomal_S17e pfam00833
Ribosomal S17;
1-59 2.31e-06

Ribosomal S17;


Pssm-ID: 425895  Cd Length: 122  Bit Score: 41.47  E-value: 2.31e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 290559895    1 MGRIRGKEIRNATIEVLRTNKNLFNDDFESNKLALN-TLVSAQKRSRNKVAGFITKLAKK 59
Cdd:pfam00833   1 MGRVRTKTVKKAARVIIEKYYSRLTNDFHTNKRICEeVAIIPSKRLRNKIAGYVTHLMKR 60
 
Name Accession Description Interval E-value
RPS17A COG1383
Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-60 1.36e-12

Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 440993  Cd Length: 63  Bit Score: 56.02  E-value: 1.36e-12
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 290559895  1 MGRIRGKEIRNATIEVLRTNKNLFNDDFESNKLALNTLVSAQ-KRSRNKVAGFITKLAKKK 60
Cdd:COG1383   1 MGNIRPTYIKRIARELLEKYPDLFTEDFEENKKLVEELTDVEsKRVRNRIAGYITRKVKKR 61
rps17E PRK01151
30S ribosomal protein S17e; Validated
 2-58 1.41e-09

30S ribosomal protein S17e; Validated


Pssm-ID: 179234  Cd Length: 58  Bit Score: 48.33  E-value: 1.41e-09
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 290559895  2 GRIRGKEIRNATIEVLRTNKNLFNDDFESNKLALNTLVSAQ-KRSRNKVAGFITKLAK 58
Cdd:PRK01151  1 GNIRPKYIKRTAEELLEKYPDLFTTDFETNKKLVEELTNIEsKKVRNRIAGYITRKVK 58
Ribosomal_S17e pfam00833
Ribosomal S17;
1-59 2.31e-06

Ribosomal S17;


Pssm-ID: 425895  Cd Length: 122  Bit Score: 41.47  E-value: 2.31e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 290559895    1 MGRIRGKEIRNATIEVLRTNKNLFNDDFESNKLALN-TLVSAQKRSRNKVAGFITKLAKK 59
Cdd:pfam00833   1 MGRVRTKTVKKAARVIIEKYYSRLTNDFHTNKRICEeVAIIPSKRLRNKIAGYVTHLMKR 60
PTZ00154 PTZ00154
40S ribosomal protein S17; Provisional
 1-59 8.32e-06

40S ribosomal protein S17; Provisional


Pssm-ID: 240295  Cd Length: 134  Bit Score: 40.40  E-value: 8.32e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 290559895   1 MGRIRGKEIRNATIEVLRTNKNLFNDDFESNK-LALNTLVSAQKRSRNKVAGFITKLAKK 59
Cdd:PTZ00154   1 MGRVRTKTVKRAARQIVEKYYSKLTLDFHTNKkIVEEVAIIPSKRLRNKIAGFVTHLMKR 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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