NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|74136287|ref|NP_001028035|]
View 

neutrophil defensin 6 precursor [Macaca mulatta]

Protein Classification

Defensin_propep and Defensin_1 domain-containing protein( domain architecture ID 10467842)

Defensin_propep and Defensin_1 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Defensin_propep pfam00879
Defensin propeptide;
1-49 3.63e-07

Defensin propeptide;


:

Pssm-ID: 459976  Cd Length: 51  Bit Score: 42.98  E-value: 3.63e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 74136287    1 MRTLAILAAILLFALLAQAKSLQETADDAATQEQPGEDDQDLAVSFEEN 49
Cdd:pfam00879  1 MRTLALLAAILLVALQAQAEPLQARADEAPDQEQPGAEDQDVSISFAGD 49
Defensin_1 pfam00323
Mammalian defensin;
76-93 1.37e-03

Mammalian defensin;


:

Pssm-ID: 425607  Cd Length: 29  Bit Score: 33.34  E-value: 1.37e-03
                         10
                 ....*....|....*...
gi 74136287   76 ESYSGSCNINGRIFSLCC 93
Cdd:pfam00323 12 ERRSGTCTINGRRYRLCC 29
 
Name Accession Description Interval E-value
Defensin_propep pfam00879
Defensin propeptide;
1-49 3.63e-07

Defensin propeptide;


Pssm-ID: 459976  Cd Length: 51  Bit Score: 42.98  E-value: 3.63e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 74136287    1 MRTLAILAAILLFALLAQAKSLQETADDAATQEQPGEDDQDLAVSFEEN 49
Cdd:pfam00879  1 MRTLALLAAILLVALQAQAEPLQARADEAPDQEQPGAEDQDVSISFAGD 49
Defensin_1 pfam00323
Mammalian defensin;
76-93 1.37e-03

Mammalian defensin;


Pssm-ID: 425607  Cd Length: 29  Bit Score: 33.34  E-value: 1.37e-03
                         10
                 ....*....|....*...
gi 74136287   76 ESYSGSCNINGRIFSLCC 93
Cdd:pfam00323 12 ERRSGTCTINGRRYRLCC 29
 
Name Accession Description Interval E-value
Defensin_propep pfam00879
Defensin propeptide;
1-49 3.63e-07

Defensin propeptide;


Pssm-ID: 459976  Cd Length: 51  Bit Score: 42.98  E-value: 3.63e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 74136287    1 MRTLAILAAILLFALLAQAKSLQETADDAATQEQPGEDDQDLAVSFEEN 49
Cdd:pfam00879  1 MRTLALLAAILLVALQAQAEPLQARADEAPDQEQPGAEDQDVSISFAGD 49
Defensin_1 pfam00323
Mammalian defensin;
76-93 1.37e-03

Mammalian defensin;


Pssm-ID: 425607  Cd Length: 29  Bit Score: 33.34  E-value: 1.37e-03
                         10
                 ....*....|....*...
gi 74136287   76 ESYSGSCNINGRIFSLCC 93
Cdd:pfam00323 12 ERRSGTCTINGRRYRLCC 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH