|
Name |
Accession |
Description |
Interval |
E-value |
| PLN00154 |
PLN00154 |
histone H2A; Provisional |
6-121 |
5.20e-63 |
|
histone H2A; Provisional
Pssm-ID: 177756 Cd Length: 136 Bit Score: 188.61 E-value: 5.20e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000371 6 AGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 85
Cdd:PLN00154 17 AAAKKDKDKKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPR 96
|
90 100 110
....*....|....*....|....*....|....*.
gi 84000371 86 HLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121
Cdd:PLN00154 97 HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 132
|
|
| H2A |
cd00074 |
Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two ... |
8-122 |
1.64e-59 |
|
Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Pssm-ID: 238029 Cd Length: 115 Bit Score: 178.68 E-value: 1.64e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000371 8 KDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTShGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 87
Cdd:cd00074 1 KGGGKKKSKKRSRSARAGLQFPVGRIHRYLKKGRYA-ERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHL 79
|
90 100 110
....*....|....*....|....*....|....*.
gi 84000371 88 QLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122
Cdd:cd00074 80 QLAVRNDEELNKLLKgVTIASGGVLPNIHKVLLPKK 115
|
|
| H2A |
smart00414 |
Histone 2A; |
19-124 |
5.48e-58 |
|
Histone 2A;
Pssm-ID: 197711 Cd Length: 106 Bit Score: 174.83 E-value: 5.48e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000371 19 SRSQRAGLQFPVGRIHRHLKTRTTSHgRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD 98
Cdd:smart00414 1 SRSARAGLQFPVGRIHRLLRKGTYAK-RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRNDEELN 79
|
90 100
....*....|....*....|....*..
gi 84000371 99 SLIKA-TIAGGGVIPHIHKSLIGKKGQ 124
Cdd:smart00414 80 KLLKGvTIAQGGVLPNIHKVLLPKKTG 106
|
|
| HTA1 |
COG5262 |
Histone H2A [Chromatin structure and dynamics]; |
1-122 |
6.89e-44 |
|
Histone H2A [Chromatin structure and dynamics];
Pssm-ID: 227587 Cd Length: 132 Bit Score: 140.00 E-value: 6.89e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000371 1 MAGGKAGKDSGKAKAKavSRSQRAGLQFPVGRIHRHLKtRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVK 80
Cdd:COG5262 2 VSGGKGGKAADARVSQ--SRSAKAGLIFPVGRVKRLLK-KGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKK 78
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 84000371 81 RITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122
Cdd:COG5262 79 RIIPRHLQLAIRNDEELNKLLGdVTIAQGGVLPNINPGLLPKS 121
|
|
| Histone |
pfam00125 |
Core histone H2A/H2B/H3/H4; |
5-94 |
1.08e-17 |
|
Core histone H2A/H2B/H3/H4;
Pssm-ID: 425478 [Multi-domain] Cd Length: 127 Bit Score: 73.22 E-value: 1.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000371 5 KAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 84
Cdd:pfam00125 38 RPGTVALKEIRKYQKSTDLLIYKLPFARVVREIVKSTKTDLRISADAVVALQEALEDYLVELFEDANLLAKHAKRVTITP 117
|
90
....*....|
gi 84000371 85 RHLQLAIRGD 94
Cdd:pfam00125 118 KDIQLARRLR 127
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN00154 |
PLN00154 |
histone H2A; Provisional |
6-121 |
5.20e-63 |
|
histone H2A; Provisional
Pssm-ID: 177756 Cd Length: 136 Bit Score: 188.61 E-value: 5.20e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000371 6 AGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 85
Cdd:PLN00154 17 AAAKKDKDKKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPR 96
|
90 100 110
....*....|....*....|....*....|....*.
gi 84000371 86 HLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121
Cdd:PLN00154 97 HLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 132
|
|
| PTZ00017 |
PTZ00017 |
histone H2A; Provisional |
3-128 |
1.62e-61 |
|
histone H2A; Provisional
Pssm-ID: 185399 Cd Length: 134 Bit Score: 184.56 E-value: 1.62e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000371 3 GGKAGKDSGK-AKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHgRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKR 81
Cdd:PTZ00017 2 GGKGKTGGGKaGKKKPVSRSAKAGLQFPVGRVHRYLKKGRYAK-RVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKR 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 84000371 82 ITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGQQKTA 128
Cdd:PTZ00017 81 ITPRHIQLAIRNDEELNKLLaGVTIASGGVLPNIHKVLLPKKSKPKQG 128
|
|
| H2A |
cd00074 |
Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two ... |
8-122 |
1.64e-59 |
|
Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Pssm-ID: 238029 Cd Length: 115 Bit Score: 178.68 E-value: 1.64e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000371 8 KDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTShGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 87
Cdd:cd00074 1 KGGGKKKSKKRSRSARAGLQFPVGRIHRYLKKGRYA-ERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHL 79
|
90 100 110
....*....|....*....|....*....|....*.
gi 84000371 88 QLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122
Cdd:cd00074 80 QLAVRNDEELNKLLKgVTIASGGVLPNIHKVLLPKK 115
|
|
| H2A |
smart00414 |
Histone 2A; |
19-124 |
5.48e-58 |
|
Histone 2A;
Pssm-ID: 197711 Cd Length: 106 Bit Score: 174.83 E-value: 5.48e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000371 19 SRSQRAGLQFPVGRIHRHLKTRTTSHgRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD 98
Cdd:smart00414 1 SRSARAGLQFPVGRIHRLLRKGTYAK-RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRNDEELN 79
|
90 100
....*....|....*....|....*..
gi 84000371 99 SLIKA-TIAGGGVIPHIHKSLIGKKGQ 124
Cdd:smart00414 80 KLLKGvTIAQGGVLPNIHKVLLPKKTG 106
|
|
| HTA1 |
COG5262 |
Histone H2A [Chromatin structure and dynamics]; |
1-122 |
6.89e-44 |
|
Histone H2A [Chromatin structure and dynamics];
Pssm-ID: 227587 Cd Length: 132 Bit Score: 140.00 E-value: 6.89e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000371 1 MAGGKAGKDSGKAKAKavSRSQRAGLQFPVGRIHRHLKtRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVK 80
Cdd:COG5262 2 VSGGKGGKAADARVSQ--SRSAKAGLIFPVGRVKRLLK-KGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKK 78
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 84000371 81 RITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 122
Cdd:COG5262 79 RIIPRHLQLAIRNDEELNKLLGdVTIAQGGVLPNINPGLLPKS 121
|
|
| PLN00157 |
PLN00157 |
histone H2A; Provisional |
3-128 |
1.38e-41 |
|
histone H2A; Provisional
Pssm-ID: 177758 Cd Length: 132 Bit Score: 134.21 E-value: 1.38e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000371 3 GGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHgRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82
Cdd:PLN00157 2 SGRGKRKGGGGGKKATSRSAKAGLQFPVGRIARYLKAGKYAT-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRI 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 84000371 83 TPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQKTA 128
Cdd:PLN00157 81 VPRHIQLAVRNDEELSKLLGgVTIAAGGVLPNIHSVLLPKKSGKSKG 127
|
|
| PLN00156 |
PLN00156 |
histone H2AX; Provisional |
1-125 |
1.90e-39 |
|
histone H2AX; Provisional
Pssm-ID: 215080 Cd Length: 139 Bit Score: 128.93 E-value: 1.90e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000371 1 MAGGKAGKDSGKAKA-KAVSRSQRAGLQFPVGRIHRHLKTRTTSHgRVGATAAVYSAAILEYLTAEVLELAGNASKDLKV 79
Cdd:PLN00156 2 AGSGTTKGGRGKPKAtKSVSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKK 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 84000371 80 KRITPRHLQLAIRGDEELDSLIKA-TIAGGGVIPHIHKSLIGKKGQQ 125
Cdd:PLN00156 81 NRIVPRHIQLAVRNDEELSKLLGSvTIAAGGVLPNIHQTLLPKKVGK 127
|
|
| PLN00153 |
PLN00153 |
histone H2A; Provisional |
1-122 |
1.27e-34 |
|
histone H2A; Provisional
Pssm-ID: 165721 Cd Length: 129 Bit Score: 116.36 E-value: 1.27e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000371 1 MAGGKAGKDSGKakaKAVSRSQRAGLQFPVGRIHRHLKTRTTSHgRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVK 80
Cdd:PLN00153 1 MAGRGKGKTSGK---KAVSRSAKAGLQFPVGRIARYLKKGKYAE-RIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKN 76
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 84000371 81 RITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122
Cdd:PLN00153 77 RIVPRHIQLAIRNDEELGKLLgEVTIASGGVLPNIHAVLLPKK 119
|
|
| PTZ00252 |
PTZ00252 |
histone H2A; Provisional |
12-128 |
1.11e-21 |
|
histone H2A; Provisional
Pssm-ID: 240330 Cd Length: 134 Bit Score: 83.47 E-value: 1.11e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000371 12 KAKAKAVSRSQRAGLQFPVGRIHRHLKtRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNAS--KDLKVKRITPRHLQL 89
Cdd:PTZ00252 10 KASKSGSGRSAKAGLIFPVGRVGSLLR-RGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAaqQAKKPKRLTPRTVTL 88
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 84000371 90 AIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQKTA 128
Cdd:PTZ00252 89 AVRHDDDLGSLLKnVTLSRGGVMPSLNKALAKKHKSGKKA 128
|
|
| Histone |
pfam00125 |
Core histone H2A/H2B/H3/H4; |
5-94 |
1.08e-17 |
|
Core histone H2A/H2B/H3/H4;
Pssm-ID: 425478 [Multi-domain] Cd Length: 127 Bit Score: 73.22 E-value: 1.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 84000371 5 KAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITP 84
Cdd:pfam00125 38 RPGTVALKEIRKYQKSTDLLIYKLPFARVVREIVKSTKTDLRISADAVVALQEALEDYLVELFEDANLLAKHAKRVTITP 117
|
90
....*....|
gi 84000371 85 RHLQLAIRGD 94
Cdd:pfam00125 118 KDIQLARRLR 127
|
|
| PLN00155 |
PLN00155 |
histone H2A; Provisional |
1-62 |
9.16e-12 |
|
histone H2A; Provisional
Pssm-ID: 165723 Cd Length: 58 Bit Score: 55.87 E-value: 9.16e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 84000371 1 MAGGKAGKDSGKakaKAVSRSQRAGLQFPVGRIHRHLKTRTTSHgRVGATAAVYSAAILEYL 62
Cdd:PLN00155 1 MAGRGKGKTSGK---KAVSRSAKAGLQFPVGRIARYLKKGKYAE-RIGAGAPVYLAAVLEYL 58
|
|
| Histone_H2A_C |
pfam16211 |
C-terminus of histone H2A; |
95-128 |
4.40e-09 |
|
C-terminus of histone H2A;
Pssm-ID: 435219 Cd Length: 35 Bit Score: 48.26 E-value: 4.40e-09
10 20 30
....*....|....*....|....*....|....*
gi 84000371 95 EELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQKTA 128
Cdd:pfam16211 1 EELNKLLGgVTIAQGGVLPNIHKVLLPKKTKKKKK 35
|
|
| BUR6 |
COG5247 |
Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]; |
27-100 |
2.19e-05 |
|
Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription];
Pssm-ID: 227572 Cd Length: 113 Bit Score: 40.72 E-value: 2.19e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 84000371 27 QFPVGRIHRHLKTrTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSL 100
Cdd:COG5247 23 RFPIARLKKIMQL-DEDIGKVGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFLKRATESDEKFDFL 95
|
|
|