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Conserved domains on  [gi|213513493|ref|NP_001134159|]
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40S ribosomal protein S15a [Salmo salar]

Protein Classification

uS8 family ribosomal protein( domain architecture ID 10015251)

uS8 family ribosomal protein is a component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell, such as mammalian 40S ribosomal protein S15a and fungal 40S ribosomal protein S22

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00158 PTZ00158
40S ribosomal protein S15A; Provisional
 1-130 6.05e-94

40S ribosomal protein S15A; Provisional


:

Pssm-ID: 185487  Cd Length: 130  Bit Score: 266.58  E-value: 6.05e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213513493   1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:PTZ00158   1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNLNGRLNKCGVISPRFD 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 213513493  81 LQLKDLEKWQNNLLPSRQFGYIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
Cdd:PTZ00158  81 VTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKILGFFY 130
 
Name Accession Description Interval E-value
PTZ00158 PTZ00158
40S ribosomal protein S15A; Provisional
 1-130 6.05e-94

40S ribosomal protein S15A; Provisional


Pssm-ID: 185487  Cd Length: 130  Bit Score: 266.58  E-value: 6.05e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213513493   1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:PTZ00158   1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNLNGRLNKCGVISPRFD 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 213513493  81 LQLKDLEKWQNNLLPSRQFGYIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
Cdd:PTZ00158  81 VTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKILGFFY 130
RpsH COG0096
Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S8 ...
 1-128 1.43e-34

Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S8 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439866  Cd Length: 132  Bit Score: 116.29  E-value: 1.43e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213513493   1 MVRMNVLADALKSINNAEKRGKRQVLIrPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:COG0096    1 MSMTDPIADMLTRIRNAQMAGKKEVDV-PASKLKGAILKVLKEEGYIKDFEVIEDGKKGKLRVELKYGINGEPVIKGIKR 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 213513493  81 LQLKDLE---KWQNNLLPSRQFGYIVLTTSAGIMDHEEARRKHTGGKILGF 128
Cdd:COG0096   80 VSKPGLRvyvKKEELPRVLNGLGIAIVSTSKGVMTDKEARKKGVGGEVLCY 130
Ribosomal_S8 pfam00410
Ribosomal protein S8;
7-130 6.22e-25

Ribosomal protein S8;


Pssm-ID: 425667  Cd Length: 127  Bit Score: 91.70  E-value: 6.22e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213513493    7 LADALKSINNAEKRGKRQVLIrPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLtgRLNK-CGVISprfdlQLKD 85
Cdd:pfam00410   3 IADMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRITL--KYNKgEPVIK-----GLKR 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 213513493   86 LEKwqnnllPSRQ--------------FGYIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
Cdd:pfam00410  75 ISK------PGLRvyvgkdelprvlngLGIAILSTSKGVMTDKEARKKGVGGEVLCYVW 127
 
Name Accession Description Interval E-value
PTZ00158 PTZ00158
40S ribosomal protein S15A; Provisional
 1-130 6.05e-94

40S ribosomal protein S15A; Provisional


Pssm-ID: 185487  Cd Length: 130  Bit Score: 266.58  E-value: 6.05e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213513493   1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:PTZ00158   1 MVRMSVLADCLRSIVNAEKQGKRQVLIRPSSKVVVKFLQVMQKHGYIGEFEIVDDHRSGKIVVNLNGRLNKCGVISPRFD 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 213513493  81 LQLKDLEKWQNNLLPSRQFGYIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
Cdd:PTZ00158  81 VTLGEFEKWANNILPSRQFGHVVLTTSYGIMDHEEARRRHTGGKILGFFY 130
PLN00146 PLN00146
40S ribosomal protein S15a; Provisional
 1-130 6.44e-85

40S ribosomal protein S15a; Provisional


Pssm-ID: 215075  Cd Length: 130  Bit Score: 243.75  E-value: 6.44e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213513493   1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:PLN00146   1 MVRRSVLNDALKTMYNAEKRGKRQVLIRPSSKVVIKFLKVMQKHGYIGEFEVVDDHRSGKIVVELNGRLNKCGVISPRFD 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 213513493  81 LQLKDLEKWQNNLLPSRQFGYIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
Cdd:PLN00146  81 VKVKEIEAWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
rps8p PRK04034
30S ribosomal protein S8P; Reviewed
 1-128 8.36e-63

30S ribosomal protein S8P; Reviewed


Pssm-ID: 179721  Cd Length: 130  Bit Score: 187.74  E-value: 8.36e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213513493   1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:PRK04034   1 MVLLDPLANALSTIKNAEMVGKKEVIIKPASKLIGNVLRVMQDEGYIGEFEYIDDGRAGKFKVELLGRINKCGAIKPRYP 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 213513493  81 LQLKDLEKWQNNLLPSRQFGYIVLTTSAGIMDHEEARRKHTGGKILGF 128
Cdd:PRK04034  81 VKYDEFEKWEKRYLPARDFGILIVSTSKGVMSHKEAREKGIGGVLLAY 128
RpsH COG0096
Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S8 ...
 1-128 1.43e-34

Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S8 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439866  Cd Length: 132  Bit Score: 116.29  E-value: 1.43e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213513493   1 MVRMNVLADALKSINNAEKRGKRQVLIrPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFD 80
Cdd:COG0096    1 MSMTDPIADMLTRIRNAQMAGKKEVDV-PASKLKGAILKVLKEEGYIKDFEVIEDGKKGKLRVELKYGINGEPVIKGIKR 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 213513493  81 LQLKDLE---KWQNNLLPSRQFGYIVLTTSAGIMDHEEARRKHTGGKILGF 128
Cdd:COG0096   80 VSKPGLRvyvKKEELPRVLNGLGIAIVSTSKGVMTDKEARKKGVGGEVLCY 130
Ribosomal_S8 pfam00410
Ribosomal protein S8;
7-130 6.22e-25

Ribosomal protein S8;


Pssm-ID: 425667  Cd Length: 127  Bit Score: 91.70  E-value: 6.22e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213513493    7 LADALKSINNAEKRGKRQVLIrPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLtgRLNK-CGVISprfdlQLKD 85
Cdd:pfam00410   3 IADMLTRIRNANMAGHEEVDI-PASKLKGAILKILKEEGYIKDFEVEEDEDKKGIRITL--KYNKgEPVIK-----GLKR 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 213513493   86 LEKwqnnllPSRQ--------------FGYIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
Cdd:pfam00410  75 ISK------PGLRvyvgkdelprvlngLGIAILSTSKGVMTDKEARKKGVGGEVLCYVW 127
rpsH PRK00136
30S ribosomal protein S8; Validated
 7-126 4.49e-15

30S ribosomal protein S8; Validated


Pssm-ID: 234658  Cd Length: 130  Bit Score: 66.23  E-value: 4.49e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213513493   7 LADALKSINNAEKRGKRQVLIrPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNL---------TG--RLNKCG-- 73
Cdd:PRK00136   6 IADMLTRIRNAQMAKHETVSM-PASKLKVAIAEILKEEGYIKDYEVEEDGKQGILRITLkygegepviEGikRVSKPGlr 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 213513493  74 VISPRfdlqlKDLEKWQNNLlpsrqfGYIVLTTSAGIMDHEEARRKHTGGKIL 126
Cdd:PRK00136  85 VYKKK-----DELPKVLNGL------GIAIVSTSKGVMTDREARKAGVGGEVL 126
rps8 CHL00042
ribosomal protein S8
 1-126 3.45e-07

ribosomal protein S8


Pssm-ID: 214344  Cd Length: 132  Bit Score: 45.93  E-value: 3.45e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 213513493   1 MVRmNVLADALKSINNAEKRGKRQVLIrPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGV------ 74
Cdd:CHL00042   1 MGN-DTIADMLTRIRNANMVKKGTVRI-PATNITENIVKILLREGFIENVREHRENNKYFLVLTLKYRGNKKKPyittlk 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 213513493  75 -IS-P--RFDLQLKDLEKWQNNLlpsrqfGYIVLTTSAGIMDHEEARRKHTGGKIL 126
Cdd:CHL00042  79 rISkPglRIYSNYKEIPRVLGGM------GIVILSTSKGIMTDREARLKGIGGEIL 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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