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Conserved domains on  [gi|255522829|ref|NP_001157324|]
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TBC1 domain family member 24 isoform b [Mus musculus]

Protein Classification

TBC domain-containing protein( domain architecture ID 10456719)

TBC domain-containing protein such as vertebrate TBC1 domain family member 24; contains a TLDc domain, which is a domain found in TBC and LysM proteins

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TLDc smart00584
domain in TBC and LysM domain containing proteins;
336-550 1.08e-56

domain in TBC and LysM domain containing proteins;


:

Pssm-ID: 214733  Cd Length: 165  Bit Score: 187.53  E-value: 1.08e-56
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829   336 SEIVSVKEMRDIWSWIPERFALCQPLLLFSSLQHGYSLSRFYFQCEG-HEPTLLLIKTTQKEVCGAYLSTDWSERTKfgg 414
Cdd:smart00584   1 SSILSEEILALINSHLPTRAEGYPWTLLYSSSQHGYSLNTLYRKVEGyRPPTLLIIKDTDGEVFGAYASQAWRVSDH--- 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829   415 klgFFGTGECFVFRLQPEVQRYEWVVIKHpeltkatslksseaagssslishcssdpadrlspflaarhfnlpskteSMF 494
Cdd:smart00584  78 ---FYGTGESFLFQLNPKFVVYDWTGKNK------------------------------------------------YYY 106
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 255522829   495 MAGGNDCLIIGGGGGQ-ALYVDGDLNRGRTGHCDTFNNQPLCS--ENFLIAAVEAWGFQ 550
Cdd:smart00584 107 INGTPDSLPIGGGGGGfGLWIDEDLNHGSSSHCKTFGNPPLSTkqEDFLILDIEVWGFG 165
RabGAP-TBC pfam00566
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are ...
48-253 1.47e-27

Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.


:

Pssm-ID: 459855  Cd Length: 178  Bit Score: 108.88  E-value: 1.47e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829   48 HTLRGKVYQRLIR-DIPcRTvtpdasvysdivgkivgkhssssLPLPEFVDNTQvptyclntrGEGAVRKILLCIANQFP 126
Cdd:pfam00566   1 DELRGQVWPEQIEkDVP-RT-----------------------FPHSFFFDNGP---------GQNSLRRILKAYSIYNP 47
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829  127 DISFCPALPAVVALLLHYSIDEAECFEKACRILScNDPTKKLIDQSFLAFESSCMTFGDLVNKYCQAAHKLMVAVSEDVL 206
Cdd:pfam00566  48 DVGYCQGMNFIAAPLLLVYLDEEDAFWCFVSLLE-NYLLRDFYTPDFPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPD 126
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 255522829  207 QVYSDWQRWLF-GELPLNYFARVFDVFLVEGYKV-LYRVALAILKFFHK 253
Cdd:pfam00566 127 LFASQWFLTLFaREFPLSTVLRIWDYFFLEGEKFvLFRVALAILKRFRE 175
 
Name Accession Description Interval E-value
TLDc smart00584
domain in TBC and LysM domain containing proteins;
336-550 1.08e-56

domain in TBC and LysM domain containing proteins;


Pssm-ID: 214733  Cd Length: 165  Bit Score: 187.53  E-value: 1.08e-56
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829   336 SEIVSVKEMRDIWSWIPERFALCQPLLLFSSLQHGYSLSRFYFQCEG-HEPTLLLIKTTQKEVCGAYLSTDWSERTKfgg 414
Cdd:smart00584   1 SSILSEEILALINSHLPTRAEGYPWTLLYSSSQHGYSLNTLYRKVEGyRPPTLLIIKDTDGEVFGAYASQAWRVSDH--- 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829   415 klgFFGTGECFVFRLQPEVQRYEWVVIKHpeltkatslksseaagssslishcssdpadrlspflaarhfnlpskteSMF 494
Cdd:smart00584  78 ---FYGTGESFLFQLNPKFVVYDWTGKNK------------------------------------------------YYY 106
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 255522829   495 MAGGNDCLIIGGGGGQ-ALYVDGDLNRGRTGHCDTFNNQPLCS--ENFLIAAVEAWGFQ 550
Cdd:smart00584 107 INGTPDSLPIGGGGGGfGLWIDEDLNHGSSSHCKTFGNPPLSTkqEDFLILDIEVWGFG 165
RabGAP-TBC pfam00566
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are ...
48-253 1.47e-27

Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.


Pssm-ID: 459855  Cd Length: 178  Bit Score: 108.88  E-value: 1.47e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829   48 HTLRGKVYQRLIR-DIPcRTvtpdasvysdivgkivgkhssssLPLPEFVDNTQvptyclntrGEGAVRKILLCIANQFP 126
Cdd:pfam00566   1 DELRGQVWPEQIEkDVP-RT-----------------------FPHSFFFDNGP---------GQNSLRRILKAYSIYNP 47
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829  127 DISFCPALPAVVALLLHYSIDEAECFEKACRILScNDPTKKLIDQSFLAFESSCMTFGDLVNKYCQAAHKLMVAVSEDVL 206
Cdd:pfam00566  48 DVGYCQGMNFIAAPLLLVYLDEEDAFWCFVSLLE-NYLLRDFYTPDFPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPD 126
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 255522829  207 QVYSDWQRWLF-GELPLNYFARVFDVFLVEGYKV-LYRVALAILKFFHK 253
Cdd:pfam00566 127 LFASQWFLTLFaREFPLSTVLRIWDYFFLEGEKFvLFRVALAILKRFRE 175
TLD pfam07534
TLD; This domain is predicted to be an enzyme and is often found associated with pfam01476. It ...
362-550 4.41e-26

TLD; This domain is predicted to be an enzyme and is often found associated with pfam01476. It's structure consists of a beta-sandwich surrounded by two helices and two one-turn helices.


Pssm-ID: 429519  Cd Length: 139  Bit Score: 103.46  E-value: 4.41e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829  362 LLFSSLQHGYSLSRFYFQCEGHEPTLLLIKTTQKEVCGAYLSTDWSERTKfggklGFFGTGECFVFRLQPEVQRYEWvvi 441
Cdd:pfam07534   1 LLYSTSRDGSSYQTFLEKIDNKGPTLLIIKDNDGYIFGAFASQPWKVSGK-----KFYGDGESFLFSLSPQFDPYKW--- 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829  442 khpeltkatslksseaagssslishcssdpadrlspflaarhfnlpSKTESMFMAGGNDCLIIGGGGGQ-ALYVDGDLNR 520
Cdd:pfam07534  73 ----------------------------------------------TGKNNAYFNCTSDGLGFGGGQPKfDLWIDSDLEF 106
                         170       180       190
                  ....*....|....*....|....*....|...
gi 255522829  521 GRTGHCDTFNNQPLCS---ENFLIAAVEAWGFQ 550
Cdd:pfam07534 107 GYSRHCETFGNGQLSGsgqERFKIDDVEVWGLG 139
TBC smart00164
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and ...
115-254 2.99e-13

Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.


Pssm-ID: 214540 [Multi-domain]  Cd Length: 216  Bit Score: 68.87  E-value: 2.99e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829   115 RKILLCIANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRIlsCNDPTKKLIDQSFLAFESSCMTFGDLVNKYCQAA 194
Cdd:smart00164  76 RRVLKAYALYNPEVGYCQGMNFLAAPLLLVMEDEEDAFWCLVKL--MERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDL 153
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 255522829   195 HKLMVAVSEDVLQVYSDWQRWLFG-ELPLNYFARVFDVFLVEGYKVLYRVALAILKFFHKV 254
Cdd:smart00164 154 YKHLKDLGITPSLYALRWFLTLFArELPLEIVLRIWDVLFAEGSDFLFRVALALLKLHRDV 214
OXR1 COG5142
Oxidation resistance protein [DNA replication, recombination, and repair];
351-547 3.23e-07

Oxidation resistance protein [DNA replication, recombination, and repair];


Pssm-ID: 227471  Cd Length: 212  Bit Score: 51.05  E-value: 3.23e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829 351 IPERFALCQPL-LLFSSLQHGYSLSRFYFQCEGHE------PTLLLIKTTQKEVCGAYLStdwserTKFGGKLGFFGTGE 423
Cdd:COG5142   49 LPDRYKYSTSWrLLYSLFENGFSLRTFYESFGENEwpfrrvGFVLACRDKDGDLFGAFFE------DRIRPARHYYGRDE 122
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829 424 CFVFRLQpevqryewvviKHPeltkATSLKSSEAAGSsslishcssdpadrlsPFLAARHFNLPSKTEsmFMAGGndcli 503
Cdd:COG5142  123 MFLWKAA-----------RRP----ADRLADKEVAVY----------------PISGGKGFGIYCTPD--FLAFG----- 164
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 255522829 504 iGGGGGQALYVDGDLNRGRTGHCDTFNNQPLCSEN--FLIAAVEAW 547
Cdd:COG5142  165 -CGGGRYGLLIDKSLLDGESHPVETFGNCLLSSKGhfFRIVYLELW 209
COG5210 COG5210
GTPase-activating protein [General function prediction only];
114-325 6.45e-05

GTPase-activating protein [General function prediction only];


Pssm-ID: 227535 [Multi-domain]  Cd Length: 496  Bit Score: 45.56  E-value: 6.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829 114 VRKILLCIANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILsCNDPTKKLIDQSFLAFESSCMTFGDLVNKYC-- 191
Cdd:COG5210  285 LRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLL-KNYGLPGYFLKNLSGLHRDLKVLDDLVEELDpe 363
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829 192 QAAHKLMVAVSEDVLQVYsdWQRWLF-GELPLNYFARVFDVFLVEGYKVLYRVALAILKffhKVRAGQ-PLESDNVKQDI 269
Cdd:COG5210  364 LYEHLLREGVVLLMFAFR--WFLTLFvREFPLEYALRIWDCLFLEGSSMLFQLALAILK---LLRDKLlKLDSDELLDLL 438
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 255522829 270 rmFVKDIAKtvSPEKLLEKAFAIRLFSRKEIQLLQManekALRQKGITVKQKRQFV 325
Cdd:COG5210  439 --LKQLFLH--SGKEAWSSILKFRHGTDRDILLFIE----DLLKKDITPTRYRSEL 486
 
Name Accession Description Interval E-value
TLDc smart00584
domain in TBC and LysM domain containing proteins;
336-550 1.08e-56

domain in TBC and LysM domain containing proteins;


Pssm-ID: 214733  Cd Length: 165  Bit Score: 187.53  E-value: 1.08e-56
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829   336 SEIVSVKEMRDIWSWIPERFALCQPLLLFSSLQHGYSLSRFYFQCEG-HEPTLLLIKTTQKEVCGAYLSTDWSERTKfgg 414
Cdd:smart00584   1 SSILSEEILALINSHLPTRAEGYPWTLLYSSSQHGYSLNTLYRKVEGyRPPTLLIIKDTDGEVFGAYASQAWRVSDH--- 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829   415 klgFFGTGECFVFRLQPEVQRYEWVVIKHpeltkatslksseaagssslishcssdpadrlspflaarhfnlpskteSMF 494
Cdd:smart00584  78 ---FYGTGESFLFQLNPKFVVYDWTGKNK------------------------------------------------YYY 106
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 255522829   495 MAGGNDCLIIGGGGGQ-ALYVDGDLNRGRTGHCDTFNNQPLCS--ENFLIAAVEAWGFQ 550
Cdd:smart00584 107 INGTPDSLPIGGGGGGfGLWIDEDLNHGSSSHCKTFGNPPLSTkqEDFLILDIEVWGFG 165
RabGAP-TBC pfam00566
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are ...
48-253 1.47e-27

Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.


Pssm-ID: 459855  Cd Length: 178  Bit Score: 108.88  E-value: 1.47e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829   48 HTLRGKVYQRLIR-DIPcRTvtpdasvysdivgkivgkhssssLPLPEFVDNTQvptyclntrGEGAVRKILLCIANQFP 126
Cdd:pfam00566   1 DELRGQVWPEQIEkDVP-RT-----------------------FPHSFFFDNGP---------GQNSLRRILKAYSIYNP 47
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829  127 DISFCPALPAVVALLLHYSIDEAECFEKACRILScNDPTKKLIDQSFLAFESSCMTFGDLVNKYCQAAHKLMVAVSEDVL 206
Cdd:pfam00566  48 DVGYCQGMNFIAAPLLLVYLDEEDAFWCFVSLLE-NYLLRDFYTPDFPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPD 126
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 255522829  207 QVYSDWQRWLF-GELPLNYFARVFDVFLVEGYKV-LYRVALAILKFFHK 253
Cdd:pfam00566 127 LFASQWFLTLFaREFPLSTVLRIWDYFFLEGEKFvLFRVALAILKRFRE 175
TLD pfam07534
TLD; This domain is predicted to be an enzyme and is often found associated with pfam01476. It ...
362-550 4.41e-26

TLD; This domain is predicted to be an enzyme and is often found associated with pfam01476. It's structure consists of a beta-sandwich surrounded by two helices and two one-turn helices.


Pssm-ID: 429519  Cd Length: 139  Bit Score: 103.46  E-value: 4.41e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829  362 LLFSSLQHGYSLSRFYFQCEGHEPTLLLIKTTQKEVCGAYLSTDWSERTKfggklGFFGTGECFVFRLQPEVQRYEWvvi 441
Cdd:pfam07534   1 LLYSTSRDGSSYQTFLEKIDNKGPTLLIIKDNDGYIFGAFASQPWKVSGK-----KFYGDGESFLFSLSPQFDPYKW--- 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829  442 khpeltkatslksseaagssslishcssdpadrlspflaarhfnlpSKTESMFMAGGNDCLIIGGGGGQ-ALYVDGDLNR 520
Cdd:pfam07534  73 ----------------------------------------------TGKNNAYFNCTSDGLGFGGGQPKfDLWIDSDLEF 106
                         170       180       190
                  ....*....|....*....|....*....|...
gi 255522829  521 GRTGHCDTFNNQPLCS---ENFLIAAVEAWGFQ 550
Cdd:pfam07534 107 GYSRHCETFGNGQLSGsgqERFKIDDVEVWGLG 139
TBC smart00164
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and ...
115-254 2.99e-13

Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.


Pssm-ID: 214540 [Multi-domain]  Cd Length: 216  Bit Score: 68.87  E-value: 2.99e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829   115 RKILLCIANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRIlsCNDPTKKLIDQSFLAFESSCMTFGDLVNKYCQAA 194
Cdd:smart00164  76 RRVLKAYALYNPEVGYCQGMNFLAAPLLLVMEDEEDAFWCLVKL--MERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDL 153
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 255522829   195 HKLMVAVSEDVLQVYSDWQRWLFG-ELPLNYFARVFDVFLVEGYKVLYRVALAILKFFHKV 254
Cdd:smart00164 154 YKHLKDLGITPSLYALRWFLTLFArELPLEIVLRIWDVLFAEGSDFLFRVALALLKLHRDV 214
OXR1 COG5142
Oxidation resistance protein [DNA replication, recombination, and repair];
351-547 3.23e-07

Oxidation resistance protein [DNA replication, recombination, and repair];


Pssm-ID: 227471  Cd Length: 212  Bit Score: 51.05  E-value: 3.23e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829 351 IPERFALCQPL-LLFSSLQHGYSLSRFYFQCEGHE------PTLLLIKTTQKEVCGAYLStdwserTKFGGKLGFFGTGE 423
Cdd:COG5142   49 LPDRYKYSTSWrLLYSLFENGFSLRTFYESFGENEwpfrrvGFVLACRDKDGDLFGAFFE------DRIRPARHYYGRDE 122
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829 424 CFVFRLQpevqryewvviKHPeltkATSLKSSEAAGSsslishcssdpadrlsPFLAARHFNLPSKTEsmFMAGGndcli 503
Cdd:COG5142  123 MFLWKAA-----------RRP----ADRLADKEVAVY----------------PISGGKGFGIYCTPD--FLAFG----- 164
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 255522829 504 iGGGGGQALYVDGDLNRGRTGHCDTFNNQPLCSEN--FLIAAVEAW 547
Cdd:COG5142  165 -CGGGRYGLLIDKSLLDGESHPVETFGNCLLSSKGhfFRIVYLELW 209
COG5210 COG5210
GTPase-activating protein [General function prediction only];
114-325 6.45e-05

GTPase-activating protein [General function prediction only];


Pssm-ID: 227535 [Multi-domain]  Cd Length: 496  Bit Score: 45.56  E-value: 6.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829 114 VRKILLCIANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILsCNDPTKKLIDQSFLAFESSCMTFGDLVNKYC-- 191
Cdd:COG5210  285 LRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLL-KNYGLPGYFLKNLSGLHRDLKVLDDLVEELDpe 363
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255522829 192 QAAHKLMVAVSEDVLQVYsdWQRWLF-GELPLNYFARVFDVFLVEGYKVLYRVALAILKffhKVRAGQ-PLESDNVKQDI 269
Cdd:COG5210  364 LYEHLLREGVVLLMFAFR--WFLTLFvREFPLEYALRIWDCLFLEGSSMLFQLALAILK---LLRDKLlKLDSDELLDLL 438
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 255522829 270 rmFVKDIAKtvSPEKLLEKAFAIRLFSRKEIQLLQManekALRQKGITVKQKRQFV 325
Cdd:COG5210  439 --LKQLFLH--SGKEAWSSILKFRHGTDRDILLFIE----DLLKKDITPTRYRSEL 486
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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