NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|329113234|ref|NP_001192288|]
View 

steroid receptor-associated and regulated protein [Bos taurus]

Protein Classification

steroid receptor-associated and regulated protein( domain architecture ID 10634675)

steroid receptor-associated and regulated protein (SRARP) may regulate the transcriptional function of androgen and estrogen receptors

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
DUF4654 pfam15547
Domain of unknown function (DUF4654); This family of proteins is found in eukaryotes. Proteins ...
66-200 1.70e-48

Domain of unknown function (DUF4654); This family of proteins is found in eukaryotes. Proteins in this family are typically between 145 and 169 amino acids in length. There is a conserved IDC sequence motif.


:

Pssm-ID: 406084  Cd Length: 137  Bit Score: 154.58  E-value: 1.70e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329113234   66 RRQKAVPGAHLTFVIDCARGKQISLAAPPGPPRTPGPNPGPAVPPMKTYILLCGEKRsSNLTLEAPLSRGGLSQAGG--- 142
Cdd:pfam15547   1 RHQKAIPTAHLTFVIDCARGKQLSLAAPPAPPQAPSPNRGPVTPPMKTYIVFCGENQ-PHLTQEIPLGGGCLAQARDtlp 79
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 329113234  143 PCRGTTAPASPPASPEGLAEAPEAKGSPVKAVSSRSSAWGTVIGSLKALSSCVCAQAD 200
Cdd:pfam15547  80 PCRGTVAPASSPVSPLCPQEAPEAKGSPLKAGPTRSSTWGTVKGSLKALSSCVCGQAD 137
 
Name Accession Description Interval E-value
DUF4654 pfam15547
Domain of unknown function (DUF4654); This family of proteins is found in eukaryotes. Proteins ...
66-200 1.70e-48

Domain of unknown function (DUF4654); This family of proteins is found in eukaryotes. Proteins in this family are typically between 145 and 169 amino acids in length. There is a conserved IDC sequence motif.


Pssm-ID: 406084  Cd Length: 137  Bit Score: 154.58  E-value: 1.70e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329113234   66 RRQKAVPGAHLTFVIDCARGKQISLAAPPGPPRTPGPNPGPAVPPMKTYILLCGEKRsSNLTLEAPLSRGGLSQAGG--- 142
Cdd:pfam15547   1 RHQKAIPTAHLTFVIDCARGKQLSLAAPPAPPQAPSPNRGPVTPPMKTYIVFCGENQ-PHLTQEIPLGGGCLAQARDtlp 79
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 329113234  143 PCRGTTAPASPPASPEGLAEAPEAKGSPVKAVSSRSSAWGTVIGSLKALSSCVCAQAD 200
Cdd:pfam15547  80 PCRGTVAPASSPVSPLCPQEAPEAKGSPLKAGPTRSSTWGTVKGSLKALSSCVCGQAD 137
 
Name Accession Description Interval E-value
DUF4654 pfam15547
Domain of unknown function (DUF4654); This family of proteins is found in eukaryotes. Proteins ...
66-200 1.70e-48

Domain of unknown function (DUF4654); This family of proteins is found in eukaryotes. Proteins in this family are typically between 145 and 169 amino acids in length. There is a conserved IDC sequence motif.


Pssm-ID: 406084  Cd Length: 137  Bit Score: 154.58  E-value: 1.70e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 329113234   66 RRQKAVPGAHLTFVIDCARGKQISLAAPPGPPRTPGPNPGPAVPPMKTYILLCGEKRsSNLTLEAPLSRGGLSQAGG--- 142
Cdd:pfam15547   1 RHQKAIPTAHLTFVIDCARGKQLSLAAPPAPPQAPSPNRGPVTPPMKTYIVFCGENQ-PHLTQEIPLGGGCLAQARDtlp 79
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 329113234  143 PCRGTTAPASPPASPEGLAEAPEAKGSPVKAVSSRSSAWGTVIGSLKALSSCVCAQAD 200
Cdd:pfam15547  80 PCRGTVAPASSPVSPLCPQEAPEAKGSPLKAGPTRSSTWGTVKGSLKALSSCVCGQAD 137
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH