NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1108847543|ref|NP_001334384|]
View 

RAD51-associated protein 1 isoform 2 [Mus musculus]

Protein Classification

PTZ00108 and RAD51_interact domain-containing protein( domain architecture ID 11238904)

PTZ00108 and RAD51_interact domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
RAD51_interact pfam15696
RAD51 interacting motif; This motif interacts with RAD51.
292-330 3.06e-12

RAD51 interacting motif; This motif interacts with RAD51.


:

Pssm-ID: 434865  Cd Length: 39  Bit Score: 60.41  E-value: 3.06e-12
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1108847543 292 GSRNSSSNALAGTPAKSPSQSLRLGLSRLAPVKRLHPSA 330
Cdd:pfam15696   1 GGSGSSSGILRGVPVKSPSQPLRLGLSRLARVKPLHPNV 39
PTZ00108 super family cl36510
DNA topoisomerase 2-like protein; Provisional
2-203 3.69e-04

DNA topoisomerase 2-like protein; Provisional


The actual alignment was detected with superfamily member PTZ00108:

Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 42.34  E-value: 3.69e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108847543    2 VRPIRNRKPINYSQFEDSGNDSDDDFISSSTPVNKSKTVPKVLKQDKPKPNLKNLQKEEVLPTEPPKKRVALDDKvfqRG 81
Cdd:PTZ00108  1196 GNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGK---PK 1272
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108847543   82 LEVALALSVKELPTLTNQVKKSKEKSTDKQGKEKTENTGKP----PHVSNCSVASDDVDLDKiteegDASSVEGERKSPS 157
Cdd:PTZ00108  1273 NAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRlegsLAALKKKKKSEKKTARK-----KKSKTRVKQASAS 1347
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1108847543  158 QAKAPRRRAPSEGSDGSSANDTESesatgEGSESDPDFDESKESDE 203
Cdd:PTZ00108  1348 QSSRLLRRPRKKKSDSSSEDDDDS-----EVDDSEDEDDEDDEDDD 1388
 
Name Accession Description Interval E-value
RAD51_interact pfam15696
RAD51 interacting motif; This motif interacts with RAD51.
292-330 3.06e-12

RAD51 interacting motif; This motif interacts with RAD51.


Pssm-ID: 434865  Cd Length: 39  Bit Score: 60.41  E-value: 3.06e-12
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1108847543 292 GSRNSSSNALAGTPAKSPSQSLRLGLSRLAPVKRLHPSA 330
Cdd:pfam15696   1 GGSGSSSGILRGVPVKSPSQPLRLGLSRLARVKPLHPNV 39
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
2-203 3.69e-04

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 42.34  E-value: 3.69e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108847543    2 VRPIRNRKPINYSQFEDSGNDSDDDFISSSTPVNKSKTVPKVLKQDKPKPNLKNLQKEEVLPTEPPKKRVALDDKvfqRG 81
Cdd:PTZ00108  1196 GNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGK---PK 1272
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108847543   82 LEVALALSVKELPTLTNQVKKSKEKSTDKQGKEKTENTGKP----PHVSNCSVASDDVDLDKiteegDASSVEGERKSPS 157
Cdd:PTZ00108  1273 NAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRlegsLAALKKKKKSEKKTARK-----KKSKTRVKQASAS 1347
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1108847543  158 QAKAPRRRAPSEGSDGSSANDTESesatgEGSESDPDFDESKESDE 203
Cdd:PTZ00108  1348 QSSRLLRRPRKKKSDSSSEDDDDS-----EVDDSEDEDDEDDEDDD 1388
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
100-309 2.67e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 39.67  E-value: 2.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108847543 100 VKKSK-------EKSTDKQGK--EKTENTGKPPhvsncsvasddvdldkiTEEGDASSVEGERKspsqakaprrraPSEG 170
Cdd:PTZ00449  489 IKKSKkklapieEEDSDKHDEppEGPEASGLPP-----------------KAPGDKEGEEGEHE------------DSKE 539
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108847543 171 SDGSSANDTESESATGE-GSESDPdfdeskesdedfgVRRSKESKKKTVQKKPAGEKKERKSK-PKCEASVTSVDPAPAA 248
Cdd:PTZ00449  540 SDEPKEGGKPGETKEGEvGKKPGP-------------AKEHKPSKIPTLSKKPEFPKDPKHPKdPEEPKKPKRPRSAQRP 606
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1108847543 249 IKSGSPSLPQAVGLPseatRKPAIMCSPSAESKRPKWVPPAASGSRNSSSNALAGTPAKSP 309
Cdd:PTZ00449  607 TRPKSPKLPELLDIP----KSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSP 663
 
Name Accession Description Interval E-value
RAD51_interact pfam15696
RAD51 interacting motif; This motif interacts with RAD51.
292-330 3.06e-12

RAD51 interacting motif; This motif interacts with RAD51.


Pssm-ID: 434865  Cd Length: 39  Bit Score: 60.41  E-value: 3.06e-12
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1108847543 292 GSRNSSSNALAGTPAKSPSQSLRLGLSRLAPVKRLHPSA 330
Cdd:pfam15696   1 GGSGSSSGILRGVPVKSPSQPLRLGLSRLARVKPLHPNV 39
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
2-203 3.69e-04

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 42.34  E-value: 3.69e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108847543    2 VRPIRNRKPINYSQFEDSGNDSDDDFISSSTPVNKSKTVPKVLKQDKPKPNLKNLQKEEVLPTEPPKKRVALDDKvfqRG 81
Cdd:PTZ00108  1196 GNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGK---PK 1272
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108847543   82 LEVALALSVKELPTLTNQVKKSKEKSTDKQGKEKTENTGKP----PHVSNCSVASDDVDLDKiteegDASSVEGERKSPS 157
Cdd:PTZ00108  1273 NAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRlegsLAALKKKKKSEKKTARK-----KKSKTRVKQASAS 1347
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 1108847543  158 QAKAPRRRAPSEGSDGSSANDTESesatgEGSESDPDFDESKESDE 203
Cdd:PTZ00108  1348 QSSRLLRRPRKKKSDSSSEDDDDS-----EVDDSEDEDDEDDEDDD 1388
PTZ00459 PTZ00459
mucin-associated surface protein (MASP); Provisional
94-257 1.71e-03

mucin-associated surface protein (MASP); Provisional


Pssm-ID: 185638 [Multi-domain]  Cd Length: 291  Bit Score: 39.77  E-value: 1.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108847543  94 PTLTNQVKKSKEKSTDKQGKEKTENTGKPPhvsnCSVASDDVDLDKITEEGDASS--VEGERKSPSQAKAprrrapseGS 171
Cdd:PTZ00459   42 PPESKGLETSSQGTQDLKGGAAGAKENSPP----LPTEEDDEDVDDDSEEGDDDDggAEDEEEEKVRGQS--------GQ 109
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108847543 172 DGSSANDTESESATGEGSESDPDFdeSKESDEDFGVRRSKESKKKTVQKKPAGEKKERKSKPKCEASVTSV---DPAPAA 248
Cdd:PTZ00459  110 EGTVALGSGSTEKKLIGSEKQTEL--SISSAESISPSGSRELNVNLTQTEVEGKKETDKNTPAVENPLTTGngeNTLPAG 187

                  ....*....
gi 1108847543 249 IKSGSPSLP 257
Cdd:PTZ00459  188 IVEGNPSPP 196
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
100-309 2.67e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 39.67  E-value: 2.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108847543 100 VKKSK-------EKSTDKQGK--EKTENTGKPPhvsncsvasddvdldkiTEEGDASSVEGERKspsqakaprrraPSEG 170
Cdd:PTZ00449  489 IKKSKkklapieEEDSDKHDEppEGPEASGLPP-----------------KAPGDKEGEEGEHE------------DSKE 539
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108847543 171 SDGSSANDTESESATGE-GSESDPdfdeskesdedfgVRRSKESKKKTVQKKPAGEKKERKSK-PKCEASVTSVDPAPAA 248
Cdd:PTZ00449  540 SDEPKEGGKPGETKEGEvGKKPGP-------------AKEHKPSKIPTLSKKPEFPKDPKHPKdPEEPKKPKRPRSAQRP 606
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1108847543 249 IKSGSPSLPQAVGLPseatRKPAIMCSPSAESKRPKWVPPAASGSRNSSSNALAGTPAKSP 309
Cdd:PTZ00449  607 TRPKSPKLPELLDIP----KSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSP 663
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
142-334 4.77e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 39.00  E-value: 4.77e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108847543  142 EEGDASSVEGERKSPSQAKAPRRRAPSEGSDGSSANDTESESATGEGSESDPDFDESKESDEDFGVRRSKESKKKTVQKK 221
Cdd:PHA03307   208 RRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASS 287
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108847543  222 PAGEKKERKSKPKCEASVTSVDPAPAAIKSGSPSLPQAVGLPSEATRKPAIM-------CSPSAESKRPKWVPPAASGSR 294
Cdd:PHA03307   288 SSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAavspgpsPSRSPSPSRPPPPADPSSPRK 367
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 1108847543  295 NSSSNALAGTPAKSPSQSLRLGLSRLAPVKRLHPSATSSQ 334
Cdd:PHA03307   368 RPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRF 407
PLN02967 PLN02967
kinase
87-206 6.43e-03

kinase


Pssm-ID: 215521 [Multi-domain]  Cd Length: 581  Bit Score: 38.10  E-value: 6.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108847543  87 ALSVKELPTLTNQVKKSKEKSTDKQGKEKT--ENTGKPPHVSNCSVASDDVDLDKI------TEEGDASSVEGERKSPSQ 158
Cdd:PLN02967   55 ALAVDEEPDENGAVSKKKPTRSVKRATKKTvvEISEPLEEGSELVVNEDAALDKESkktprrTRRKAAAASSDVEEEKTE 134
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1108847543 159 AKAPRRRAPSEGSDGSSANDTESESATGEGSESDPDFDESKESDEDFG 206
Cdd:PLN02967  135 KKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEELDLE 182
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
101-312 8.74e-03

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 37.92  E-value: 8.74e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108847543  101 KKSKEKSTDKQGKEKTENTgkpphvsncSVASDDVDLDKITEEGDASSVEGERKSPSQAKAPRRRAPSEGSD-------- 172
Cdd:PLN03237  1199 RQAPKKPAPKKTTKKASES---------ETTEETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKEKEEEDeildlkdr 1269
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1108847543  173 -----------GSSANDTESE--SATGEGSESDPDFDESKESDEDfgvrrsKESKKKTVQKKPAGEKKeRKSKPKCEASV 239
Cdd:PLN03237  1270 laaynldsapaQSAKMEETVKavPARRAAARKKPLASVSVISDSD------DDDDDFAVEVSLAERLK-KKGGRKPAAAN 1342
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1108847543  240 TSVDPAPAAIKSGSPSLPQAVGLPSEATRKPAIMCSPSAESKrpkwVPPAASGSRNSSSNALAGTPAKSPSQS 312
Cdd:PLN03237  1343 KKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIGISPEKK----VRKMRASPFNKKSGSVLGRAATNKETE 1411
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH