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Conserved domains on  [gi|1395168464|ref|NP_001350927|]
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calnexin isoform e precursor [Homo sapiens]

Protein Classification

calreticulin family protein( domain architecture ID 10446997)

calreticulin family protein similar to calnexin which is a calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Calreticulin pfam00262
Calreticulin family;
71-440 0e+00

Calreticulin family;


:

Pssm-ID: 425564  Cd Length: 369  Bit Score: 683.13  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395168464  71 FADSFDRGTL-SGWILSKAKKDDTDDEIAKYDGKWEVEEMKESK-LPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIV 148
Cdd:pfam00262   1 FFEQFDDYDWeSRWIPSKAKKDDSDDEIAKYDGKWAVEEPTVYPgFEGDKGLVLKSKAKHHAISAKLDKPIDFKDKTLVV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395168464 149 QYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKHAKRPDAdlkt 228
Cdd:pfam00262  81 QYEVKLQNGLECGGAYIKLLSESNDLDLEEFSDKTPYTIMFGPDKCGSTNKVHFIFRHKNPKTGEYEEKHLKKPPK---- 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395168464 229 YFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSREIEDPEDRKPEDWDERPKIPDPEAVKPDDWDEDA 308
Cdd:pfam00262 157 IRTDKLTHLYTLILRPDNTFEIRIDGEVVKSGNLLEDFKPPVNPPKEIDDPNDKKPEDWDDREKIPDPNAVKPDDWDEDA 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395168464 309 PAKIPDEEATKPEGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPRCESAPGCGVWQRPVIDNPNYKGKWKPPMI 388
Cdd:pfam00262 237 PEFIPDPDATKPEGWLEDEPEYIPDPEATKPEDWDEEEDGEWEAPLIPNPKCEEAPGCGPWKPPMIKNPKYKGKWKPPMI 316
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1395168464 389 DNPSYQGIWKPRKIPNPDFFEDLEPFR-MTPFSAIGLELWSMTSDIFFDNFII 440
Cdd:pfam00262 317 DNPNYKGEWKPRKIPNPDYFEDKHPFSnLEPIGAIGFELWSMSKDILFDNIYI 369
 
Name Accession Description Interval E-value
Calreticulin pfam00262
Calreticulin family;
71-440 0e+00

Calreticulin family;


Pssm-ID: 425564  Cd Length: 369  Bit Score: 683.13  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395168464  71 FADSFDRGTL-SGWILSKAKKDDTDDEIAKYDGKWEVEEMKESK-LPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIV 148
Cdd:pfam00262   1 FFEQFDDYDWeSRWIPSKAKKDDSDDEIAKYDGKWAVEEPTVYPgFEGDKGLVLKSKAKHHAISAKLDKPIDFKDKTLVV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395168464 149 QYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKHAKRPDAdlkt 228
Cdd:pfam00262  81 QYEVKLQNGLECGGAYIKLLSESNDLDLEEFSDKTPYTIMFGPDKCGSTNKVHFIFRHKNPKTGEYEEKHLKKPPK---- 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395168464 229 YFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSREIEDPEDRKPEDWDERPKIPDPEAVKPDDWDEDA 308
Cdd:pfam00262 157 IRTDKLTHLYTLILRPDNTFEIRIDGEVVKSGNLLEDFKPPVNPPKEIDDPNDKKPEDWDDREKIPDPNAVKPDDWDEDA 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395168464 309 PAKIPDEEATKPEGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPRCESAPGCGVWQRPVIDNPNYKGKWKPPMI 388
Cdd:pfam00262 237 PEFIPDPDATKPEGWLEDEPEYIPDPEATKPEDWDEEEDGEWEAPLIPNPKCEEAPGCGPWKPPMIKNPKYKGKWKPPMI 316
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1395168464 389 DNPSYQGIWKPRKIPNPDFFEDLEPFR-MTPFSAIGLELWSMTSDIFFDNFII 440
Cdd:pfam00262 317 DNPNYKGEWKPRKIPNPDYFEDKHPFSnLEPIGAIGFELWSMSKDILFDNIYI 369
 
Name Accession Description Interval E-value
Calreticulin pfam00262
Calreticulin family;
71-440 0e+00

Calreticulin family;


Pssm-ID: 425564  Cd Length: 369  Bit Score: 683.13  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395168464  71 FADSFDRGTL-SGWILSKAKKDDTDDEIAKYDGKWEVEEMKESK-LPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIV 148
Cdd:pfam00262   1 FFEQFDDYDWeSRWIPSKAKKDDSDDEIAKYDGKWAVEEPTVYPgFEGDKGLVLKSKAKHHAISAKLDKPIDFKDKTLVV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395168464 149 QYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKHAKRPDAdlkt 228
Cdd:pfam00262  81 QYEVKLQNGLECGGAYIKLLSESNDLDLEEFSDKTPYTIMFGPDKCGSTNKVHFIFRHKNPKTGEYEEKHLKKPPK---- 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395168464 229 YFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSREIEDPEDRKPEDWDERPKIPDPEAVKPDDWDEDA 308
Cdd:pfam00262 157 IRTDKLTHLYTLILRPDNTFEIRIDGEVVKSGNLLEDFKPPVNPPKEIDDPNDKKPEDWDDREKIPDPNAVKPDDWDEDA 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395168464 309 PAKIPDEEATKPEGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPRCESAPGCGVWQRPVIDNPNYKGKWKPPMI 388
Cdd:pfam00262 237 PEFIPDPDATKPEGWLEDEPEYIPDPEATKPEDWDEEEDGEWEAPLIPNPKCEEAPGCGPWKPPMIKNPKYKGKWKPPMI 316
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1395168464 389 DNPSYQGIWKPRKIPNPDFFEDLEPFR-MTPFSAIGLELWSMTSDIFFDNFII 440
Cdd:pfam00262 317 DNPNYKGEWKPRKIPNPDYFEDKHPFSnLEPIGAIGFELWSMSKDILFDNIYI 369
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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