NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|6755396|ref|NP_035445|]
View 

serum amyloid A-3 protein precursor [Mus musculus]

Protein Classification

SAA domain-containing protein( domain architecture ID 10447209)

SAA domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
SAA pfam00277
Serum amyloid A protein;
22-122 5.39e-59

Serum amyloid A protein;


:

Pssm-ID: 425576  Cd Length: 102  Bit Score: 176.71  E-value: 5.39e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755396     22 VQFMKEAGQGSRDMWRAYSDMKKANWKNSDKYFHARGNYDAARRGPGGAWAAKVISDAREAVQKFT-GHGAEDSRADQFA 100
Cdd:pfam00277   1 VSFFGEAAQGAGDMWRAYWDMREANYKNSDKYFHARGNYDAAQRGPGGVWAAEVISDAREYLQGHVsGRGLEDSAADQEA 80
                          90       100
                  ....*....|....*....|..
gi 6755396    101 NEWGRSGKDPNHFRPAGLPKRY 122
Cdd:pfam00277  81 NEWGRSGKDPNHFRPAGLPDKY 102
 
Name Accession Description Interval E-value
SAA pfam00277
Serum amyloid A protein;
22-122 5.39e-59

Serum amyloid A protein;


Pssm-ID: 425576  Cd Length: 102  Bit Score: 176.71  E-value: 5.39e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755396     22 VQFMKEAGQGSRDMWRAYSDMKKANWKNSDKYFHARGNYDAARRGPGGAWAAKVISDAREAVQKFT-GHGAEDSRADQFA 100
Cdd:pfam00277   1 VSFFGEAAQGAGDMWRAYWDMREANYKNSDKYFHARGNYDAAQRGPGGVWAAEVISDAREYLQGHVsGRGLEDSAADQEA 80
                          90       100
                  ....*....|....*....|..
gi 6755396    101 NEWGRSGKDPNHFRPAGLPKRY 122
Cdd:pfam00277  81 NEWGRSGKDPNHFRPAGLPDKY 102
SAA smart00197
Serum amyloid A proteins; Serum amyloid A proteins are induced during the acute-phase response. ...
21-122 5.14e-54

Serum amyloid A proteins; Serum amyloid A proteins are induced during the acute-phase response. Secondary amyloidosis is characterised by the extracellular accumulation in tissues of SAA proteins. SAA proteins are apolipoproteins.


Pssm-ID: 214552  Cd Length: 103  Bit Score: 164.23  E-value: 5.14e-54
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755396      21 WVQFMKEAGQGSRDMWRAYSDMKKANWKNSDKYFHARGNYDAARRGPGGAWAAKVISDAREAVQKFT-GHGAEDSRADQF 99
Cdd:smart00197   1 WRSFFKEALQGAWDMWRAYRDMKEANHQNADKYFHARGNYDAAQRGPGGVWAAKVISDAREYFQGLIsGRGLEDSKADQK 80
                           90       100
                   ....*....|....*....|...
gi 6755396     100 ANEWGRSGKDPNHFRPAGLPKRY 122
Cdd:smart00197  81 ANEWGRSGKDPNRFRPPGLPEKY 103
 
Name Accession Description Interval E-value
SAA pfam00277
Serum amyloid A protein;
22-122 5.39e-59

Serum amyloid A protein;


Pssm-ID: 425576  Cd Length: 102  Bit Score: 176.71  E-value: 5.39e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755396     22 VQFMKEAGQGSRDMWRAYSDMKKANWKNSDKYFHARGNYDAARRGPGGAWAAKVISDAREAVQKFT-GHGAEDSRADQFA 100
Cdd:pfam00277   1 VSFFGEAAQGAGDMWRAYWDMREANYKNSDKYFHARGNYDAAQRGPGGVWAAEVISDAREYLQGHVsGRGLEDSAADQEA 80
                          90       100
                  ....*....|....*....|..
gi 6755396    101 NEWGRSGKDPNHFRPAGLPKRY 122
Cdd:pfam00277  81 NEWGRSGKDPNHFRPAGLPDKY 102
SAA smart00197
Serum amyloid A proteins; Serum amyloid A proteins are induced during the acute-phase response. ...
21-122 5.14e-54

Serum amyloid A proteins; Serum amyloid A proteins are induced during the acute-phase response. Secondary amyloidosis is characterised by the extracellular accumulation in tissues of SAA proteins. SAA proteins are apolipoproteins.


Pssm-ID: 214552  Cd Length: 103  Bit Score: 164.23  E-value: 5.14e-54
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755396      21 WVQFMKEAGQGSRDMWRAYSDMKKANWKNSDKYFHARGNYDAARRGPGGAWAAKVISDAREAVQKFT-GHGAEDSRADQF 99
Cdd:smart00197   1 WRSFFKEALQGAWDMWRAYRDMKEANHQNADKYFHARGNYDAAQRGPGGVWAAKVISDAREYFQGLIsGRGLEDSKADQK 80
                           90       100
                   ....*....|....*....|...
gi 6755396     100 ANEWGRSGKDPNHFRPAGLPKRY 122
Cdd:smart00197  81 ANEWGRSGKDPNRFRPPGLPEKY 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH