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Conserved domains on  [gi|11465855|ref|NP_053999|]
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photosystem II protein L (chloroplast) [Porphyra purpurea]

Protein Classification

photosystem II reaction center protein L( domain architecture ID 10000036)

photosystem II reaction center protein L (PSII-L) is one of the components of the core complex of photosystem II (PSII), which is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation

Gene Ontology:  GO:0015979|GO:0016020|GO:0009523
PubMed:  31641747|23527694

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
psbL CHL00038
photosystem II protein L
 1-38 8.43e-19

photosystem II protein L


:

Pssm-ID: 176979  Cd Length: 38  Bit Score: 69.73  E-value: 8.43e-19
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 11465855   1 MSGPNPNKEPVDLNRTSLFWGLLLIFVLAVLFSSYFFN 38
Cdd:CHL00038  1 MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
 
Name Accession Description Interval E-value
psbL CHL00038
photosystem II protein L
 1-38 8.43e-19

photosystem II protein L


Pssm-ID: 176979  Cd Length: 38  Bit Score: 69.73  E-value: 8.43e-19
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 11465855   1 MSGPNPNKEPVDLNRTSLFWGLLLIFVLAVLFSSYFFN 38
Cdd:CHL00038  1 MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
PsbL COG5726
Photosystem II reaction center protein L, PsbL [Energy production and conversion]; Photosystem ...
 1-38 2.64e-14

Photosystem II reaction center protein L, PsbL [Energy production and conversion]; Photosystem II reaction center protein L, PsbL is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444436  Cd Length: 38  Bit Score: 58.22  E-value: 2.64e-14
                       10        20        30
               ....*....|....*....|....*....|....*...
gi 11465855  1 MSGPNPNKEPVDLNRTSLFWGLLLIFVLAVLFSSYFFN 38
Cdd:COG5726  1 MRTPNPNNQPVELNRTSLYLGLLLVFVLALLFSSYFFN 38
PsbL pfam02419
PsbL protein; This family consists of the photosystem II reaction centre protein PsbJ from ...
 4-38 7.11e-13

PsbL protein; This family consists of the photosystem II reaction centre protein PsbJ from plants and Cyanobacteria. The function of this small protein is unknown. Interestingly the mRNA for this protein requires a post-transcriptional modification of an ACG triplet to form an AUG initiator codon.


Pssm-ID: 396815  Cd Length: 37  Bit Score: 54.78  E-value: 7.11e-13
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 11465855    4 PNPNKEPVDLNRTSLFWGLLLIFVLAVLFSSYFFN 38
Cdd:pfam02419  3 PNPNNQPVELNRTSLYLGLLLVFVLALLFSSYFFN 37
 
Name Accession Description Interval E-value
psbL CHL00038
photosystem II protein L
 1-38 8.43e-19

photosystem II protein L


Pssm-ID: 176979  Cd Length: 38  Bit Score: 69.73  E-value: 8.43e-19
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 11465855   1 MSGPNPNKEPVDLNRTSLFWGLLLIFVLAVLFSSYFFN 38
Cdd:CHL00038  1 MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
PsbL COG5726
Photosystem II reaction center protein L, PsbL [Energy production and conversion]; Photosystem ...
 1-38 2.64e-14

Photosystem II reaction center protein L, PsbL [Energy production and conversion]; Photosystem II reaction center protein L, PsbL is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444436  Cd Length: 38  Bit Score: 58.22  E-value: 2.64e-14
                       10        20        30
               ....*....|....*....|....*....|....*...
gi 11465855  1 MSGPNPNKEPVDLNRTSLFWGLLLIFVLAVLFSSYFFN 38
Cdd:COG5726  1 MRTPNPNNQPVELNRTSLYLGLLLVFVLALLFSSYFFN 38
PsbL pfam02419
PsbL protein; This family consists of the photosystem II reaction centre protein PsbJ from ...
 4-38 7.11e-13

PsbL protein; This family consists of the photosystem II reaction centre protein PsbJ from plants and Cyanobacteria. The function of this small protein is unknown. Interestingly the mRNA for this protein requires a post-transcriptional modification of an ACG triplet to form an AUG initiator codon.


Pssm-ID: 396815  Cd Length: 37  Bit Score: 54.78  E-value: 7.11e-13
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 11465855    4 PNPNKEPVDLNRTSLFWGLLLIFVLAVLFSSYFFN 38
Cdd:pfam02419  3 PNPNNQPVELNRTSLYLGLLLVFVLALLFSSYFFN 37
psbL PRK00753
photosystem II reaction center L; Provisional
 4-38 7.44e-12

photosystem II reaction center L; Provisional


Pssm-ID: 134373  Cd Length: 39  Bit Score: 52.06  E-value: 7.44e-12
                        10        20        30
                ....*....|....*....|....*....|....*
gi 11465855   4 PNPNKEPVDLNRTSLFWGLLLIFVLAVLFSSYFFN 38
Cdd:PRK00753  5 PNPNKQPVELNRTSLYLGLLLVFVLGILFSSYFFN 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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