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Conserved domains on  [gi|18138244|ref|NP_542461|]
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ATP synthase F0 subunit 6 (mitochondrion) [Lepidosiren paradoxa]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009577)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-226 4.35e-112

ATP synthase F0 subunit 6; Provisional


:

Pssm-ID: 177190  Cd Length: 227  Bit Score: 320.28  E-value: 4.35e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244    1 MILSFFDQFLSPTLLGMPLIILAIVFPWILYPSQTNRWVINRLSSIQNWLVLLVTKQLLQPVNSPGHKWAAILTTMLIFL 80
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   81 ISLNLLGLLPYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVIIETISLFIRPIALGVR 160
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18138244  161 LTANLTAGHLLMQLIATAVFYLLTTLPSIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQEN 226
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
 
Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-226 4.35e-112

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 320.28  E-value: 4.35e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244    1 MILSFFDQFLSPTLLGMPLIILAIVFPWILYPSQTNRWVINRLSSIQNWLVLLVTKQLLQPVNSPGHKWAAILTTMLIFL 80
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   81 ISLNLLGLLPYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVIIETISLFIRPIALGVR 160
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18138244  161 LTANLTAGHLLMQLIATAVFYLLTTLPSIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQEN 226
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 2-226 1.96e-47

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 155.83  E-value: 1.96e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244     2 ILSFFDQFLSPTLLGMPLIILAIVFPWILYPSQTNRWVI-NRLSSIQNWLVLLVTKQLLQPVNSPGHKWAAILTTMLIFL 80
Cdd:TIGR01131   2 FSQFDISPITLFSLTLLSLILLLSLLIFLISSSLSRWLIpSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244    81 ISLNLLGLLPYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVIIETISLFIRPIALGVR 160
Cdd:TIGR01131  82 LISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVR 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18138244   161 LTANLTAGHLLMQLIATAVFYLLTtlPSIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQEN 226
Cdd:TIGR01131 162 LFANISAGHLLLTLLSGLLFSLMS--SAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDA 225
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 66-224 3.32e-36

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 124.82  E-value: 3.32e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244  66 GHKWAAILTTMLIFLISLNLLGLLPYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVII 145
Cdd:cd00310   1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 18138244 146 ETISLFIRPIALGVRLTANLTAGHLLMQLIATAVFYLLTtlpSIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQ 224
Cdd:cd00310  81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLS---SVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP-synt_A pfam00119
ATP synthase A chain;
14-224 9.92e-33

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 117.59  E-value: 9.92e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244    14 LLGMPLIILAIVFPWILYPSQTNRWVINRLSSIQNWLVLLVTKQLLQPVNSP-GHKWAAILTTMLIFLI---SLNLLGLL 89
Cdd:pfam00119   1 LLMSLIVALILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKDNIGKKkGRKFFPLLLTLFFFILvsnLLGLIPKS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244    90 PYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTS-LGHLLPEGTPTLLIPALVIIETISLFIRPIALGVRLTANLTAG 168
Cdd:pfam00119  81 PGGFTVTADINVTLALALIVFLLVHYYGIKKHGLGGyFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAG 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 18138244   169 HLLMQLIATAVFYLLTTLPSIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQ 224
Cdd:pfam00119 161 HLLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 19-225 6.38e-23

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 92.06  E-value: 6.38e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244  19 LIILAIVFPWILYPSQTNRWVINRLSSIQNWLVLLVTKQLLQPVNSPGHKWAAILTTMLIFLISLNLLGLLPYTFTPTTQ 98
Cdd:COG0356   7 WLAMLLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTAD 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244  99 LSMNVSLAIPMWLATVLIGLRNQPTTS-LGHLLPEGTPtLLIPALVIIETISLFIRPIALGVRLTANLTAGHLLMQLIAT 177
Cdd:COG0356  87 INVTLALALIVFVLVHYYGIKKKGLGGyLKHLFFPPFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLLAG 165

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 18138244 178 AVFYLLTtlpsiAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQE 225
Cdd:COG0356 166 LAPFLLL-----GVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVYISL 208
 
Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-226 4.35e-112

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 320.28  E-value: 4.35e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244    1 MILSFFDQFLSPTLLGMPLIILAIVFPWILYPSQTNRWVINRLSSIQNWLVLLVTKQLLQPVNSPGHKWAAILTTMLIFL 80
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   81 ISLNLLGLLPYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVIIETISLFIRPIALGVR 160
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18138244  161 LTANLTAGHLLMQLIATAVFYLLTTLPSIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQEN 226
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 1-227 2.01e-107

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 308.43  E-value: 2.01e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244    1 MILSFFDQFLSPTLLGMPLIILAIVFPWILYPSQTNRWVINRLSSIQNWLVLLVTKQLLQPVNSPGHKWAAILTTMLIFL 80
Cdd:MTH00073   1 MNLSFFDQFLSPTLLGIPLIMLAMLLPWLLFPTPTNKWLNNRLSTLQIWFLQNFTKQLMLPLNTPGHKWALILTSLMVFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   81 ISLNLLGLLPYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVIIETISLFIRPIALGVR 160
Cdd:MTH00073  81 ITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 18138244  161 LTANLTAGHLLMQLIATAVFYLLTTLPSIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQENT 227
Cdd:MTH00073 161 LTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQENV 227
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-227 1.18e-104

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 301.36  E-value: 1.18e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244    1 MILSFFDQFLSPTLLGMPLIILAIVFPWILYPSQTNRWVINRLSSIQNWLVLLVTKQLLQPVNSPGHKWAAILTTMLIFL 80
Cdd:MTH00120   1 MNLNFFDQFSSPELLGIPLILLAMLIPALLIPSPKNRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   81 ISLNLLGLLPYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVIIETISLFIRPIALGVR 160
Cdd:MTH00120  81 LLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 18138244  161 LTANLTAGHLLMQLIATAVFYLLTTLPSIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQENT 227
Cdd:MTH00120 161 LTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQENT 227
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-227 6.13e-86

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 254.10  E-value: 6.13e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244    1 MILSFFDQFLSPTLLGMPLIILAIVFPWILYPSQTNRWVINRLSSIQNWLVLLVTKQLLQPVNSPGHKWAAILTTMLIFL 80
Cdd:MTH00179   1 MMLSMFDQFESPSLLGIPLLALALLLPWLLFPSLTNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   81 ISLNLLGLLPYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVIIETISLFIRPIALGVR 160
Cdd:MTH00179  81 LTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 18138244  161 LTANLTAGHLLMQLIATAVFYLLTTLPSIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQENT 227
Cdd:MTH00179 161 LTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQENL 227
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 6-227 2.82e-80

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 239.47  E-value: 2.82e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244    6 FDQFLSPTLLGMPLIILAIVFPWILYPSqTNRWVINRLSSIQNWLVLLVTKQLLQPVNSPGHKWAAILTTMLIFLISLNL 85
Cdd:MTH00101   6 FASFITPTILGLPIVTLIIMFPSLLFPT-PNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIGSTNL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   86 LGLLPYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVIIETISLFIRPIALGVRLTANL 165
Cdd:MTH00101  85 LGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRLTANI 164

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18138244  166 TAGHLLMQLIATAVFYLLTTLPSIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQENT 227
Cdd:MTH00101 165 TAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 1-226 5.09e-51

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 165.15  E-value: 5.09e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244    1 MILSFFDQFLSPTLLGMPLIILAIVFP--WILYPSQTNrWVINRLSSIQNWLVLLVTKQLLQPVNSPGHKWAAILTTMLI 78
Cdd:MTH00035   3 INNSIFGQFSPDTILFIPLTLLSSVIAlsWLFFINPTN-WLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   79 FLISLNLLGLLPYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVIIETISLFIRPIALG 158
Cdd:MTH00035  82 LILSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALG 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18138244  159 VRLTANLTAGHLLMQLIATAVfYLLTTLPSIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQEN 226
Cdd:MTH00035 162 LRLAANLTAGHLLIFLLSTAI-WELSNSPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQN 228
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 2-226 1.96e-47

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 155.83  E-value: 1.96e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244     2 ILSFFDQFLSPTLLGMPLIILAIVFPWILYPSQTNRWVI-NRLSSIQNWLVLLVTKQLLQPVNSPGHKWAAILTTMLIFL 80
Cdd:TIGR01131   2 FSQFDISPITLFSLTLLSLILLLSLLIFLISSSLSRWLIpSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244    81 ISLNLLGLLPYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVIIETISLFIRPIALGVR 160
Cdd:TIGR01131  82 LISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVR 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18138244   161 LTANLTAGHLLMQLIATAVFYLLTtlPSIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQEN 226
Cdd:TIGR01131 162 LFANISAGHLLLTLLSGLLFSLMS--SAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDA 225
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 90-225 2.97e-40

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 137.22  E-value: 2.97e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   90 PYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVIIETISLFIRPIALGVRLTANLTAGH 169
Cdd:MTH00157  89 PYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAVRLAANMIAGH 168

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 18138244  170 LLMQLIATAVFYLLTTLPSIailTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQE 225
Cdd:MTH00157 169 LLLTLLGNTGPSLSSMILSI---LILIQILLLILESAVAIIQSYVFSVLSTLYSSE 221
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-227 2.68e-37

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 130.15  E-value: 2.68e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244    1 MILSFFDQFLSPTLLGMPLIILAIVFPWI-LYPSQTNRWVI-NRLSSIQNWLVLLVTKQLLQPVNSPGHKWAAILTTMLI 78
Cdd:MTH00176   1 MLVDLFSSFDPPNKNIFSMISLSWITLLLfLLLMPSSVWFCpSKLQVFMLMFSTFLPEMILRSNGSYILGSASIIISLFI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   79 FLISLNLLGLLPYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVIIETISLFIRPIALG 158
Cdd:MTH00176  81 LVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTLA 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 18138244  159 VRLTANLTAGHLLMQLIATAVFYLLTTLPSIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQENT 227
Cdd:MTH00176 161 VRLAANLSAGHLLLGLLGAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEHP 229
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 2-225 3.64e-37

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 129.60  E-value: 3.64e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244    2 ILSFFDQFLSPTLLGMPLIILAIVFPWILYPSQTnRWVINRLSSIQNWLVLLVTKQLLQPVNSPGHKWAAILTTMLIFLI 81
Cdd:MTH00173   5 LFSSFDDHNSSFSSLSFLMWLLSLMSLFFFSSSV-WVSSSNLSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFLFLI 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   82 SLNLLGLLPYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVIIETISLFIRPIALGVRL 161
Cdd:MTH00173  84 SLNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLTVRL 163

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18138244  162 TANLTAGHLLMQLIATAVFYLLTTLPS-IAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQE 225
Cdd:MTH00173 164 LANISAGHIVLTLIGNYLSSSLFSSSVvSLLLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDE 228
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 66-224 3.32e-36

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 124.82  E-value: 3.32e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244  66 GHKWAAILTTMLIFLISLNLLGLLPYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVII 145
Cdd:cd00310   1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 18138244 146 ETISLFIRPIALGVRLTANLTAGHLLMQLIATAVFYLLTtlpSIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQ 224
Cdd:cd00310  81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLS---SVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP-synt_A pfam00119
ATP synthase A chain;
14-224 9.92e-33

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 117.59  E-value: 9.92e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244    14 LLGMPLIILAIVFPWILYPSQTNRWVINRLSSIQNWLVLLVTKQLLQPVNSP-GHKWAAILTTMLIFLI---SLNLLGLL 89
Cdd:pfam00119   1 LLMSLIVALILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKDNIGKKkGRKFFPLLLTLFFFILvsnLLGLIPKS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244    90 PYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTS-LGHLLPEGTPTLLIPALVIIETISLFIRPIALGVRLTANLTAG 168
Cdd:pfam00119  81 PGGFTVTADINVTLALALIVFLLVHYYGIKKHGLGGyFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAG 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 18138244   169 HLLMQLIATAVFYLLTTLPSIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQ 224
Cdd:pfam00119 161 HLLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 2-227 1.06e-29

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 110.21  E-value: 1.06e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244    2 ILSFFDQFLSPTLLGMPLIILAIVFPWILYPSQTNRWVI-NRLSSIQNWLVLLVTKQLLQPVNSPGHKWAAILTTMLIFL 80
Cdd:MTH00005   5 IFSSFDPATNSLFNNLSSTAFWAFNFSIILLLSSSFWITpNRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISALFTMI 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   81 ISLNLLGLLPYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVIIETISLFIRPIALGVR 160
Cdd:MTH00005  85 ILMNLSGLLPYVFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPITLSFR 164

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 18138244  161 LTANLTAGHLLMQLIATAVFYLLTTLPSIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQENT 227
Cdd:MTH00005 165 LAANMSAGHIVLSLIGIYAASALFSSISSTILLILTQMGYILFEVGICLIQAYIFCLLLSLYSDDHP 231
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 1-223 2.02e-29

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 109.75  E-value: 2.02e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244    1 MILSFFDQFLSPTLLGM--PLIILAIVFPWILYPSQTNRWVINRLSSIQNWLVLLVTKQLLQPVNSPGHKWAAILTTMLI 78
Cdd:MTH00172   1 MSSSYFDQFNIVWLIGLtnSSIMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   79 FLISLNLLGLLPYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVIIETISLFIRPIALG 158
Cdd:MTH00172  81 FIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLG 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18138244  159 VRLTANLTAGHLLMQLIATAVFYLLTTLPSIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYL 223
Cdd:MTH00172 161 VRLAANLSAGHLLFAILAGFGFNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYL 225
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 1-223 2.94e-29

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 109.71  E-value: 2.94e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244    1 MILSFFDQFLSPTLLGMP---------------LIILAIVFPWILYpsQTNRWVINRLSSIQNWLVLLVTKQLLQPVNSP 65
Cdd:MTH00175   1 MLAAYFDQFNIIRLITIQaflgdwlvtftnssmMMVLAVIIFWLLL--KGDKLIPNRWQSIMELIYLNIRSVVHDNLGKS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   66 GHKWAAILTTMLIFLISLNLLGLLPYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVII 145
Cdd:MTH00175  79 GQKYFPFILSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLI 158

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 18138244  146 ETISLFIRPIALGVRLTANLTAGHLLMQLIATAVFYLLTT-LPSIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYL 223
Cdd:MTH00175 159 ETLSYLIRAISLGVRLAANISAGHLLFAILSGFAFNMLSNgLIILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYL 237
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 19-225 6.38e-23

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 92.06  E-value: 6.38e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244  19 LIILAIVFPWILYPSQTNRWVINRLSSIQNWLVLLVTKQLLQPVNSPGHKWAAILTTMLIFLISLNLLGLLPYTFTPTTQ 98
Cdd:COG0356   7 WLAMLLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTAD 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244  99 LSMNVSLAIPMWLATVLIGLRNQPTTS-LGHLLPEGTPtLLIPALVIIETISLFIRPIALGVRLTANLTAGHLLMQLIAT 177
Cdd:COG0356  87 INVTLALALIVFVLVHYYGIKKKGLGGyLKHLFFPPFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLLAG 165

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 18138244 178 AVFYLLTtlpsiAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQE 225
Cdd:COG0356 166 LAPFLLL-----GVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVYISL 208
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 1-225 1.59e-18

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 80.61  E-value: 1.59e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244    1 MILSFFDQFLSPTLLGMPLIILAIVFPWILYPSQTNRwVINRLSSIQNWLVLLVTKQLLQPVNSPGHKWAAILTTMLIFL 80
Cdd:PRK05815   5 LIIGFGGFNFDSLLLSVLLGVLILLLFALVATRKLSG-VPGGLQNFVEMIVEFVRGQVKDNIGGKGKKFAPLAFTLFLFI 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   81 ISLNLLGLLP-YTFTPTTQLSMNVSLAIPMWLATVLIGLRNQpttSLGHLLPEGTPTLlIPALVIIETISLFIRPIALGV 159
Cdd:PRK05815  84 LLMNLLGLIPyLLFPPTADINVTLALALIVFVLVIYYGIKKK---GLGGYLKEFYLQP-HPLLLPIEIISEFSRPISLSL 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18138244  160 RLTANLTAGHLLMQLIATAVFYLLTtlpsIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQE 225
Cdd:PRK05815 160 RLFGNMLAGELILALIALLGGAGLL----LALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYISM 221
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 66-225 2.77e-18

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 80.75  E-value: 2.77e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   66 GHKWAAILTTMLIFLISLNLLGLLPYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVII 145
Cdd:MTH00174  87 GGNYLAFVLSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPLLTII 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244  146 ETISLFIRPIALGVRLTANLTAGHLLMQLIATAVFYLLTTLPSI-AILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQ 224
Cdd:MTH00174 167 ETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMINTGILIgSFVPFAILIFVTILEMAVAIIQAYVFTLLTIVYLR 246


                 .
gi 18138244  225 E 225
Cdd:MTH00174 247 D 247
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 73-223 3.89e-12

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 64.38  E-value: 3.89e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   73 LTTMLIFLISLNLLGLLPYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVIIETISLFI 152
Cdd:PRK13419 174 LLTVFFFILVCNLLGLVPYGATATGNINVTLTLAVFTFFITQYAAIKAHGIKGYLAHLTGGTHWSLWIIMIPIEFIGLFT 253

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18138244  153 RPIALGVRLTANLTAGHLLMQLIATAVFYLLTTLPSIAILTFIVLFLLtILELAVAMIQAYVFVLLLTLYL 223
Cdd:PRK13419 254 KPFALTVRLFANMTAGHIVILSLIFISFILKSYIVAVAVSVPFAIFIY-LLELFVAFLQAYIFTMLSALFI 323
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 94-223 2.51e-10

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 59.13  E-value: 2.51e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   94 TPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVIIETI-SLFIRPIALGVRLTANLTAGHLLm 172
Cdd:PRK13417 217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEFIvSPMAKTFALTVRLLANMTAGHVI- 295

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 18138244  173 qLIATAVFYLLTTLPSIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYL 223
Cdd:PRK13417 296 -ILALMGFIFQFQSWGIVPVSVIGSGLIYVLEIFVAFLQAYIFVLLTSLFV 345
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 90-225 1.21e-09

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 55.75  E-value: 1.21e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   90 PYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSlgHLLPEGTPTLLIP-ALVIIETISLFIRPIALGVRLTANLTAG 168
Cdd:MTH00087  72 PYSFSPCGMVEFTFLYALVAWLSTFLSFLSKSEKFS--VYLSKGSDSFLKTfSMLFVEIVSELSRPLALTLRLTVNLMVG 149

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 18138244  169 HLLMQLIAtavfyllttlpSIAILTFIVLFLLTILELAVAMIQAYVFVLLLTLYLQE 225
Cdd:MTH00087 150 HLISSLLN-----------FLGEKYVWLSILAIMMECFVAFIQSYIFSRLIYLYLNE 195
ATP6 MTH00050
ATP synthase F0 subunit 6; Validated
 90-214 1.15e-03

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177125  Cd Length: 170  Bit Score: 38.33  E-value: 1.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   90 PYTFTPTTQLSMNVSLAIPMWLATVLIGLRNQPTTSLGHLLPEGTPTLLIPALVIIETISLFIRPIALGVRLTANLTAGH 169
Cdd:MTH00050  43 PYIYSPFLFVVFLFVVVFPLFISLFLSRVFDSLNEFFSSFVPVGTPLYICPFVCIAETISYIIRPVVLILRPFINISLGC 122

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 18138244  170 LLMqliatavfYLLTTLPSIAILTFIVLFLLTILELAVAMIQAYV 214
Cdd:MTH00050 123 FGG--------VALGNLCFISYWWFLVLFFLFFYEVFVALVHWFI 159
PRK13421 PRK13421
F0F1 ATP synthase subunit A; Provisional
 42-218 6.47e-03

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237383  Cd Length: 223  Bit Score: 36.60  E-value: 6.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244   42 RLSSIQNWLVLLVT---KQLLQPVNSPGHKWAAILTTMLIFLISLNLLGLLPYTFTPTTQLSMNVSLAIPMWLATVLIGL 118
Cdd:PRK13421  47 APGRLQSVLELVVTtidAQIRDTMQTDPAPYRALIGTLFLFVLVANWSSLVPGVEPPTAHLETDAALALIVFLATIYYGV 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18138244  119 RNQPTTslGHLLPEGTPTLLIPALVIIETISlfiRPIALGVRLTANLTAGHLLMQlIATAVFYLLTTLPSIAiltfivlf 198
Cdd:PRK13421 127 RARGVR--GYLATFAEPTWVMIPLNLVEQLT---RTFSLIVRLFGNVMSGVFVIG-IVLSLAGLLVPIPLMA-------- 192

                        170       180
                 ....*....|....*....|
gi 18138244  199 lltiLELAVAMIQAYVFVLL 218
Cdd:PRK13421 193 ----LDLLTGAVQAYIFAVL 208
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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