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Conserved domains on  [gi|28876543|ref|NP_579893|]
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unnamed protein product [Human immunodeficiency virus 1]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PBP_N super family cl25322
Penicillin-binding protein N-terminus; This domain occurs at the N-terminus of some ...
12-26 2.43e-03

Penicillin-binding protein N-terminus; This domain occurs at the N-terminus of some penicillin-binding proteins in Caulobacter species.


The actual alignment was detected with superfamily member pfam17093:

Pssm-ID: 435721  Cd Length: 138  Bit Score: 31.66  E-value: 2.43e-03
                          10
                  ....*....|....*
gi 28876543    12 RWGWRWGTMLLGMLM 26
Cdd:pfam17093  81 KWGWVWGTLLVGFLL 95
 
Name Accession Description Interval E-value
PBP_N pfam17093
Penicillin-binding protein N-terminus; This domain occurs at the N-terminus of some ...
12-26 2.43e-03

Penicillin-binding protein N-terminus; This domain occurs at the N-terminus of some penicillin-binding proteins in Caulobacter species.


Pssm-ID: 435721  Cd Length: 138  Bit Score: 31.66  E-value: 2.43e-03
                          10
                  ....*....|....*
gi 28876543    12 RWGWRWGTMLLGMLM 26
Cdd:pfam17093  81 KWGWVWGTLLVGFLL 95
 
Name Accession Description Interval E-value
PBP_N pfam17093
Penicillin-binding protein N-terminus; This domain occurs at the N-terminus of some ...
12-26 2.43e-03

Penicillin-binding protein N-terminus; This domain occurs at the N-terminus of some penicillin-binding proteins in Caulobacter species.


Pssm-ID: 435721  Cd Length: 138  Bit Score: 31.66  E-value: 2.43e-03
                          10
                  ....*....|....*
gi 28876543    12 RWGWRWGTMLLGMLM 26
Cdd:pfam17093  81 KWGWVWGTLLVGFLL 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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