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Conserved domains on  [gi|1083764560|gb|OGI45345|]
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23S rRNA (uracil(1939)-C(5))-methyltransferase [Candidatus Muproteobacteria bacterium RBG_16_65_31]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rumA super family cl36219
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;
14-440 0e+00

23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;


The actual alignment was detected with superfamily member PRK13168:

Pssm-ID: 237291 [Multi-domain]  Cd Length: 443  Bit Score: 616.40  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560  14 VESLSHDGRGVAHVGGKAVFIEGALPGEEVRFRYLNRRRRYDNGAALEILSPGPDRVPPPCPHFGACGGCSLQHLRPEAQ 93
Cdd:PRK13168   20 IESLDHDGRGVARHNGKTVFIEGALPGERVEVQVTEDKKQYARAKVVRILKPSPERVTPRCPHFGVCGGCQLQHLSIDAQ 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560  94 IRAKQQALAEQLQRIGKVQPESWLAPVTGPAWGYRRRARLGARFVPKNGGVLVGFRARRRSFIANLDACPVLEPCISGLL 173
Cdd:PRK13168  100 IASKQRALEDLLKHLAGVEPEEVLPPIAGPPWGYRRRARLSVRYVPKKGQLLVGFREKNSSDIVDIDQCPVLVPPLSALL 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 174 PQLRALVATLSCPDRIPQIEVAVGADAAALVFRHLVPLADRDLELLRAFGARHTVQIHLQGGGPESVRALWPDEAPaLFY 253
Cdd:PRK13168  180 PPLRALLSSLSAKRRLGHVELAQGDNGTALVLRHLEPLSEADRAKLRAFAEQHGLQLYLQPKGPDLVHLLGPADAQ-LSY 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 254 RLPEHDIKIYFRPTDFIQINDQVNRQAVAQAIALLDPGPRDTALDLFCGLGNFTLPLARRVQGVLGIEAEPGLVEGARRN 333
Cdd:PRK13168  259 YLPEFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERAREN 338

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 334 AAANGVANAEFRAANLYDAVSAApPWGDLRCDKLLLDPPRSGAIEAIKLLPSPGPERIVYISCYPVTLARDSEYLVHArG 413
Cdd:PRK13168  339 ARRNGLDNVTFYHANLEEDFTDQ-PWALGGFDKVLLDPPRAGAAEVMQALAKLGPKRIVYVSCNPATLARDAGVLVEA-G 416

                         410       420
                  ....*....|....*....|....*..
gi 1083764560 414 YRLAAAGVMDMFPHTSHVESMAMFVRE 440
Cdd:PRK13168  417 YRLKRAGMLDMFPHTGHVESMALFERG 443
 
Name Accession Description Interval E-value
rumA PRK13168
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;
14-440 0e+00

23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;


Pssm-ID: 237291 [Multi-domain]  Cd Length: 443  Bit Score: 616.40  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560  14 VESLSHDGRGVAHVGGKAVFIEGALPGEEVRFRYLNRRRRYDNGAALEILSPGPDRVPPPCPHFGACGGCSLQHLRPEAQ 93
Cdd:PRK13168   20 IESLDHDGRGVARHNGKTVFIEGALPGERVEVQVTEDKKQYARAKVVRILKPSPERVTPRCPHFGVCGGCQLQHLSIDAQ 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560  94 IRAKQQALAEQLQRIGKVQPESWLAPVTGPAWGYRRRARLGARFVPKNGGVLVGFRARRRSFIANLDACPVLEPCISGLL 173
Cdd:PRK13168  100 IASKQRALEDLLKHLAGVEPEEVLPPIAGPPWGYRRRARLSVRYVPKKGQLLVGFREKNSSDIVDIDQCPVLVPPLSALL 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 174 PQLRALVATLSCPDRIPQIEVAVGADAAALVFRHLVPLADRDLELLRAFGARHTVQIHLQGGGPESVRALWPDEAPaLFY 253
Cdd:PRK13168  180 PPLRALLSSLSAKRRLGHVELAQGDNGTALVLRHLEPLSEADRAKLRAFAEQHGLQLYLQPKGPDLVHLLGPADAQ-LSY 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 254 RLPEHDIKIYFRPTDFIQINDQVNRQAVAQAIALLDPGPRDTALDLFCGLGNFTLPLARRVQGVLGIEAEPGLVEGARRN 333
Cdd:PRK13168  259 YLPEFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERAREN 338

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 334 AAANGVANAEFRAANLYDAVSAApPWGDLRCDKLLLDPPRSGAIEAIKLLPSPGPERIVYISCYPVTLARDSEYLVHArG 413
Cdd:PRK13168  339 ARRNGLDNVTFYHANLEEDFTDQ-PWALGGFDKVLLDPPRAGAAEVMQALAKLGPKRIVYVSCNPATLARDAGVLVEA-G 416

                         410       420
                  ....*....|....*....|....*..
gi 1083764560 414 YRLAAAGVMDMFPHTSHVESMAMFVRE 440
Cdd:PRK13168  417 YRLKRAGMLDMFPHTGHVESMALFERG 443
TrmA COG2265
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure ...
 14-438 3.09e-131

tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 441866 [Multi-domain]  Cd Length: 377  Bit Score: 383.37  E-value: 3.09e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560  14 VESLSHDGRGVAHVGGKAVFIEGALPGEEVRFRYLNRRRRYDNGAALEILSPGPDRVPPPCPHFGACGGCSLQHLRPEAQ 93
Cdd:COG2265     7 IEDLAHGGDGVARHDGKVVFVPGALPGERVRVRVTKVKKSFARAKLVEVLEPSPDRVEPPCPHFGRCGGCQLQHLSYEAQ 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560  94 IRAKQQALAEQLQRIGKVQPESWlAPVTG--PAWGYRRRARLGARFVpkNGGVLVGFRARRRSFIANLDACPVLEPCISG 171
Cdd:COG2265    87 LELKQRVVREALERIGGLPEVEV-EPIIGspEPWGYRNRARLSVRRT--DGRLRLGFYARGSHELVDIDECPLLDPALNA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 172 LLPQLRALVATLSCPD-RIPQIEVAVGADAaalvfrhlvpladrdlellrafgarhtvqihlqgggpesvralwpdeapa 250
Cdd:COG2265   164 LLPALRELLAELGARRgELRHLVVRAGRDY-------------------------------------------------- 193

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 251 LFYRLpeHDIKIYFRPTDFIQINDQVNRQAVAQAIALLDPGPRDTALDLFCGLGNFTLPLARRVQGVLGIEAEPGLVEGA 330
Cdd:COG2265   194 LTERL--GGLTFRISPGSFFQVNPEQAEALYAAALEWLDLTGGERVLDLYCGVGTFALPLARRAKKVIGVEIVPEAVEDA 271

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 331 RRNAAANGVANAEFRAANLYDAVSAAPPWGdlRCDKLLLDPPRSGA-IEAIKLLPSPGPERIVYISCYPVTLARDSEYLV 409
Cdd:COG2265   272 RENARLNGLKNVEFVAGDLEEVLPELLWGG--RPDVVVLDPPRAGAgPEVLEALAALGPRRIVYVSCNPATLARDLALLV 349

                         410       420
                  ....*....|....*....|....*....
gi 1083764560 410 HArGYRLAAAGVMDMFPHTSHVESMAMFV 438
Cdd:COG2265   350 EG-GYRLEKVQPVDMFPHTHHVESVALLE 377
rumA TIGR00479
23S rRNA (uracil-5-)-methyltransferase RumA; This protein family was first proposed to be RNA ...
 17-432 2.57e-96

23S rRNA (uracil-5-)-methyltransferase RumA; This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 129571 [Multi-domain]  Cd Length: 431  Bit Score: 295.96  E-value: 2.57e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560  17 LSHDGRGVAHVGGKAVFIEGALPGEEVRFRYLNRRRRYDNGAALEILSPGPDRVPPPCPHFGACGGCSLQHLRPEAQIRA 96
Cdd:TIGR00479   1 LDHQGEGVARFNGKTVFVPGALPGEKAEVRVTEVKKQYARARVKKILEDSPERTTPPCPHFGQCGGCQLQHLSYELQLRS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560  97 KQQALAEQLQRIGKVQPE--SWLAPVTGPAWGYRRRARLGARFVPKnGGVLVGFRARRRSFIANLDACPVLEPCISGLLP 174
Cdd:TIGR00479  81 KQQQVIALLERIGKFVSEpiEDVPTIGDDPWGYRNKARLSLGRSPS-GQLQAGFYQKGSHDIVDVKQCPVQAPALNALLP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 175 QLRALVATLSCPDRIPQIEVAVGADAAALVFRHLVPLADRDLELLRAFGARHTVQIHLQGGGPES---VRALWPDEAPAL 251
Cdd:TIGR00479 160 KVRAILENFGASRYLEHKELGQARHGVLRIGRHTGELSSVDRTALERFPHKEELDLYLQPDSPDVksiCQNINPEKTNVI 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 252 F------------YRLPEHDIKIYFRPTDFIQINDQVNRQAVAQAIALLDPGPRDTALDLFCGLGNFTLPLARRVQGVLG 319
Cdd:TIGR00479 240 FgeeteviagempIYDKSGDLSFTFSARDFIQVNSGQNEKLVDRALEWLELQGEERVLDAYCGMGTFTLPLAKQAKSVVG 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 320 IEAEPGLVEGARRNAAANGVANAEFRAANLyDAVSAAPPWGDLRCDKLLLDPPRSG-AIEAIKLLPSPGPERIVYISCYP 398
Cdd:TIGR00479 320 VEGVPESVEKAQQNAELNGIANVTFYHGTL-ETVLPKQPWAGNGFDKVLLDPPRKGcAAGVLRTIIKLKPERIVYVSCNP 398

                         410       420       430
                  ....*....|....*....|....*....|....
gi 1083764560 399 VTLARDSEYLVHArGYRLAAAGVMDMFPHTSHVE 432
Cdd:TIGR00479 399 ATLARDLEALCKA-GYTIARVQPVDMFPHTGHVE 431
tRNA_U5-meth_tr pfam05958
tRNA (Uracil-5-)-methyltransferase; This family consists of (Uracil-5-)-methyltransferases EC: ...
 254-433 1.98e-18

tRNA (Uracil-5-)-methyltransferase; This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalyzed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.


Pssm-ID: 428692  Cd Length: 357  Bit Score: 86.34  E-value: 1.98e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 254 RLPEHDIKIYFRPTD--FIQINDQVNRQAVAQAIALLDPGPRDTaLDLFCGLGNFTLPLARRVQGVLGIEAEPGLVEGAR 331
Cdd:pfam05958 162 TLPVAGREFIYRQVEnsFTQPNAAVNIKMLEWACDVTQGSKGDL-LELYCGNGNFSLALARNFRKVLATEIAKPSVAAAQ 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 332 RNAAANGVANAEF---RAANLYDAVSAAPPW--------GDLRCDKLLLDPPRSGA-IEAIKLLpsPGPERIVYISCYPV 399
Cdd:pfam05958 241 YNIAANNIDNVQIirmSAEEFTQAMNGVREFnrlkgidlKSYNCSTIFVDPPRAGLdPETLKLV--QAYPRILYISCNPE 318

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1083764560 400 TLARDSEYLVHArgYRLAAAGVMDMFPHTSHVES 433
Cdd:pfam05958 319 TLCANLEQLSKT--HRVERFALFDQFPYTHHMEC 350
AdoMet_MTases cd02440
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
 295-387 1.11e-05

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


Pssm-ID: 100107 [Multi-domain]  Cd Length: 107  Bit Score: 43.96  E-value: 1.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 295 TALDLFCGLGNFTLPLARRVQG-VLGIEAEPGLVEGARRNAAANGVANAEFRAANLYDavsaAPPWGDLRCDKLLLDPP- 372
Cdd:cd02440     1 RVLDLGCGTGALALALASGPGArVTGVDISPVALELARKAAAALLADNVEVLKGDAEE----LPPEADESFDVIISDPPl 76

                          90       100
                  ....*....|....*....|.
gi 1083764560 373 ------RSGAIEAIKLLPSPG 387
Cdd:cd02440    77 hhlvedLARFLEEARRLLKPG 97
rADc smart00650
Ribosomal RNA adenine dimethylases;
281-332 4.42e-03

Ribosomal RNA adenine dimethylases;


Pssm-ID: 128898  Cd Length: 169  Bit Score: 37.88  E-value: 4.42e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1083764560  281 VAQAIALLDPGPRDTALDLFCGLGNFTLPLARRVQGVLGIEAEPGLVEGARR 332
Cdd:smart00650   2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERAKRVTAIEIDPRLAPRLRE 53
 
Name Accession Description Interval E-value
rumA PRK13168
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;
14-440 0e+00

23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;


Pssm-ID: 237291 [Multi-domain]  Cd Length: 443  Bit Score: 616.40  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560  14 VESLSHDGRGVAHVGGKAVFIEGALPGEEVRFRYLNRRRRYDNGAALEILSPGPDRVPPPCPHFGACGGCSLQHLRPEAQ 93
Cdd:PRK13168   20 IESLDHDGRGVARHNGKTVFIEGALPGERVEVQVTEDKKQYARAKVVRILKPSPERVTPRCPHFGVCGGCQLQHLSIDAQ 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560  94 IRAKQQALAEQLQRIGKVQPESWLAPVTGPAWGYRRRARLGARFVPKNGGVLVGFRARRRSFIANLDACPVLEPCISGLL 173
Cdd:PRK13168  100 IASKQRALEDLLKHLAGVEPEEVLPPIAGPPWGYRRRARLSVRYVPKKGQLLVGFREKNSSDIVDIDQCPVLVPPLSALL 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 174 PQLRALVATLSCPDRIPQIEVAVGADAAALVFRHLVPLADRDLELLRAFGARHTVQIHLQGGGPESVRALWPDEAPaLFY 253
Cdd:PRK13168  180 PPLRALLSSLSAKRRLGHVELAQGDNGTALVLRHLEPLSEADRAKLRAFAEQHGLQLYLQPKGPDLVHLLGPADAQ-LSY 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 254 RLPEHDIKIYFRPTDFIQINDQVNRQAVAQAIALLDPGPRDTALDLFCGLGNFTLPLARRVQGVLGIEAEPGLVEGARRN 333
Cdd:PRK13168  259 YLPEFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERAREN 338

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 334 AAANGVANAEFRAANLYDAVSAApPWGDLRCDKLLLDPPRSGAIEAIKLLPSPGPERIVYISCYPVTLARDSEYLVHArG 413
Cdd:PRK13168  339 ARRNGLDNVTFYHANLEEDFTDQ-PWALGGFDKVLLDPPRAGAAEVMQALAKLGPKRIVYVSCNPATLARDAGVLVEA-G 416

                         410       420
                  ....*....|....*....|....*..
gi 1083764560 414 YRLAAAGVMDMFPHTSHVESMAMFVRE 440
Cdd:PRK13168  417 YRLKRAGMLDMFPHTGHVESMALFERG 443
TrmA COG2265
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure ...
 14-438 3.09e-131

tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 441866 [Multi-domain]  Cd Length: 377  Bit Score: 383.37  E-value: 3.09e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560  14 VESLSHDGRGVAHVGGKAVFIEGALPGEEVRFRYLNRRRRYDNGAALEILSPGPDRVPPPCPHFGACGGCSLQHLRPEAQ 93
Cdd:COG2265     7 IEDLAHGGDGVARHDGKVVFVPGALPGERVRVRVTKVKKSFARAKLVEVLEPSPDRVEPPCPHFGRCGGCQLQHLSYEAQ 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560  94 IRAKQQALAEQLQRIGKVQPESWlAPVTG--PAWGYRRRARLGARFVpkNGGVLVGFRARRRSFIANLDACPVLEPCISG 171
Cdd:COG2265    87 LELKQRVVREALERIGGLPEVEV-EPIIGspEPWGYRNRARLSVRRT--DGRLRLGFYARGSHELVDIDECPLLDPALNA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 172 LLPQLRALVATLSCPD-RIPQIEVAVGADAaalvfrhlvpladrdlellrafgarhtvqihlqgggpesvralwpdeapa 250
Cdd:COG2265   164 LLPALRELLAELGARRgELRHLVVRAGRDY-------------------------------------------------- 193

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 251 LFYRLpeHDIKIYFRPTDFIQINDQVNRQAVAQAIALLDPGPRDTALDLFCGLGNFTLPLARRVQGVLGIEAEPGLVEGA 330
Cdd:COG2265   194 LTERL--GGLTFRISPGSFFQVNPEQAEALYAAALEWLDLTGGERVLDLYCGVGTFALPLARRAKKVIGVEIVPEAVEDA 271

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 331 RRNAAANGVANAEFRAANLYDAVSAAPPWGdlRCDKLLLDPPRSGA-IEAIKLLPSPGPERIVYISCYPVTLARDSEYLV 409
Cdd:COG2265   272 RENARLNGLKNVEFVAGDLEEVLPELLWGG--RPDVVVLDPPRAGAgPEVLEALAALGPRRIVYVSCNPATLARDLALLV 349

                         410       420
                  ....*....|....*....|....*....
gi 1083764560 410 HArGYRLAAAGVMDMFPHTSHVESMAMFV 438
Cdd:COG2265   350 EG-GYRLEKVQPVDMFPHTHHVESVALLE 377
rumA TIGR00479
23S rRNA (uracil-5-)-methyltransferase RumA; This protein family was first proposed to be RNA ...
 17-432 2.57e-96

23S rRNA (uracil-5-)-methyltransferase RumA; This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 129571 [Multi-domain]  Cd Length: 431  Bit Score: 295.96  E-value: 2.57e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560  17 LSHDGRGVAHVGGKAVFIEGALPGEEVRFRYLNRRRRYDNGAALEILSPGPDRVPPPCPHFGACGGCSLQHLRPEAQIRA 96
Cdd:TIGR00479   1 LDHQGEGVARFNGKTVFVPGALPGEKAEVRVTEVKKQYARARVKKILEDSPERTTPPCPHFGQCGGCQLQHLSYELQLRS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560  97 KQQALAEQLQRIGKVQPE--SWLAPVTGPAWGYRRRARLGARFVPKnGGVLVGFRARRRSFIANLDACPVLEPCISGLLP 174
Cdd:TIGR00479  81 KQQQVIALLERIGKFVSEpiEDVPTIGDDPWGYRNKARLSLGRSPS-GQLQAGFYQKGSHDIVDVKQCPVQAPALNALLP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 175 QLRALVATLSCPDRIPQIEVAVGADAAALVFRHLVPLADRDLELLRAFGARHTVQIHLQGGGPES---VRALWPDEAPAL 251
Cdd:TIGR00479 160 KVRAILENFGASRYLEHKELGQARHGVLRIGRHTGELSSVDRTALERFPHKEELDLYLQPDSPDVksiCQNINPEKTNVI 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 252 F------------YRLPEHDIKIYFRPTDFIQINDQVNRQAVAQAIALLDPGPRDTALDLFCGLGNFTLPLARRVQGVLG 319
Cdd:TIGR00479 240 FgeeteviagempIYDKSGDLSFTFSARDFIQVNSGQNEKLVDRALEWLELQGEERVLDAYCGMGTFTLPLAKQAKSVVG 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 320 IEAEPGLVEGARRNAAANGVANAEFRAANLyDAVSAAPPWGDLRCDKLLLDPPRSG-AIEAIKLLPSPGPERIVYISCYP 398
Cdd:TIGR00479 320 VEGVPESVEKAQQNAELNGIANVTFYHGTL-ETVLPKQPWAGNGFDKVLLDPPRKGcAAGVLRTIIKLKPERIVYVSCNP 398

                         410       420       430
                  ....*....|....*....|....*....|....
gi 1083764560 399 VTLARDSEYLVHArGYRLAAAGVMDMFPHTSHVE 432
Cdd:TIGR00479 399 ATLARDLEALCKA-GYTIARVQPVDMFPHTGHVE 431
rumB PRK03522
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC;
254-440 1.58e-26

23S rRNA (uracil(747)-C(5))-methyltransferase RlmC;


Pssm-ID: 235128 [Multi-domain]  Cd Length: 315  Bit Score: 108.80  E-value: 1.58e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 254 RLPEH--DIKIYFRPTDFIQINDQVNRQAVAQAIALLDPGPRDTALDLFCGLGNFTLPLARRVQGVLGIEAEPGLVEGAR 331
Cdd:PRK03522  133 ALPERfnGVPLFIRPQSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 332 RNAAANGVANAEFRAAnlyDAVSAAPPWGDLRcDKLLLDPPRSGAIEAI-KLLPSPGPERIVYISCYPVTLARDseyLVH 410
Cdd:PRK03522  213 QSAAELGLTNVQFQAL---DSTQFATAQGEVP-DLVLVNPPRRGIGKELcDYLSQMAPRFILYSSCNAQTMAKD---LAH 285

                         170       180       190
                  ....*....|....*....|....*....|
gi 1083764560 411 ARGYRLAAAGVMDMFPHTSHVESMAMFVRE 440
Cdd:PRK03522  286 LPGYRIERVQLFDMFPHTAHYEVLTLLVRQ 315
meth_trns_rumB TIGR02085
23S rRNA (uracil-5-)-methyltransferase RumB; This family consists of RNA methyltransferases ...
 78-439 3.85e-23

23S rRNA (uracil-5-)-methyltransferase RumB; This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 131140  Cd Length: 374  Bit Score: 100.30  E-value: 3.85e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560  78 GACGGCSLQHLRPEAQIRAKQQALAEQLqrIGKVQPESWLAPVTGPAWGYRRRARL---GARFVPknggvLVGFRARRRS 154
Cdd:TIGR02085   8 GRCRSCQWLAQPYSEQLTNKQQHLKELL--APNATVVQWLAPVTSAEQAFRNKAKMvvsGSVERP-----ILGILHRDGT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 155 FIaNLDACP-----------VLEPCI--SGLLP--------QLRALVATLSCPDRIPQIEVAVGADAAALVFRHLVPlad 213
Cdd:TIGR02085  81 PL-DLCDCPlypqsfqpvfaYLKNFIarAGLTPynvakkkgELKFILLTESENSGQLMLRFVLRSETKLAQIRRALP--- 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 214 rdlELLRAFGARHTVQIHLQgggPESVRALWPDEAPALFYR--LPEH--DIKIYFRPTDFIQINDQVNRQAVAQAIALLD 289
Cdd:TIGR02085 157 ---WLIEQLPQLEVISVNIQ---PVHMAILEGEEEIFLTEQqaLPERfnDVPLVIRPQSFFQTNPKVAAQLYATARQWVR 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 290 PGPRDTALDLFCGLGNFTLPLARRVQGVLGIEAEPGLVEGARRNAAANGVANAEFRAanlYDAVSAAPPWGDLRcDKLLL 369
Cdd:TIGR02085 231 EIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAA---LDSAKFATAQMSAP-ELVLV 306

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1083764560 370 DPPRSG-AIEAIKLLPSPGPERIVYISCYPVTLARDseyLVHARGYRLAAAGVMDMFPHTSHVESMAMFVR 439
Cdd:TIGR02085 307 NPPRRGiGKELCDYLSQMAPKFILYSSCNAQTMAKD---IAELSGYQIERVQLFDMFPHTSHYEVLTLLVR 374
PRK05031 PRK05031
tRNA (uracil-5-)-methyltransferase; Validated
 80-433 1.04e-18

tRNA (uracil-5-)-methyltransferase; Validated


Pssm-ID: 235332  Cd Length: 362  Bit Score: 87.19  E-value: 1.04e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560  80 CGGCSLQHLRPEAQIRAKQQALAEQLQRIGkvQPEswLAPVTGPAWGYRRRARLGarfVPKNGGVL--VGFRARRRSFIA 157
Cdd:PRK05031    1 MTPECLPPEQYEAQLAEKVARLKELFAPFS--APE--PEVFRSPPSHYRMRAEFR---IWHEGDDLyyAMFDQQTKQRIR 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 158 nLDACPVLEPCISGLLPQLRALV----------------ATLS-------CPDRipQIEVAVGADAAALvfrhlvplAD- 213
Cdd:PRK05031   74 -IDQFPIASELINALMPALLAALranpvlrhklfqvdflSTLSgeilvslLYHK--KLDEEWEQAAKAL--------RDa 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 214 -RDLELL-RAFGARHT-----VQIHLQGGGPEsvralwpdeapaLFYRLPEhdikiyfrpTDFIQINDQVNRQAVAQAIA 286
Cdd:PRK05031  143 lFNVHLIgRSRKQKIVldqdyVDERLPVAGRE------------FIYRQVE---------NSFTQPNAAVNEKMLEWALD 201

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 287 LLDPGPRDTaLDLFCGLGNFTLPLARRVQGVLGIE-AEPGlVEGAR--------------RNAAAngvanaEFRAA---- 347
Cdd:PRK05031  202 ATKGSKGDL-LELYCGNGNFTLALARNFRRVLATEiSKPS-VAAAQyniaangidnvqiiRMSAE------EFTQAmngv 273

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 348 ----NLYDAvsaappwgDL---RCDKLLLDPPRSGA-IEAIKLLPspGPERIVYISCYPVTLARDSEYLvhARGYRLAAA 419
Cdd:PRK05031  274 refnRLKGI--------DLksyNFSTIFVDPPRAGLdDETLKLVQ--AYERILYISCNPETLCENLETL--SQTHKVERF 341

                         410
                  ....*....|....
gi 1083764560 420 GVMDMFPHTSHVES 433
Cdd:PRK05031  342 ALFDQFPYTHHMEC 355
tRNA_U5-meth_tr pfam05958
tRNA (Uracil-5-)-methyltransferase; This family consists of (Uracil-5-)-methyltransferases EC: ...
 254-433 1.98e-18

tRNA (Uracil-5-)-methyltransferase; This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalyzed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.


Pssm-ID: 428692  Cd Length: 357  Bit Score: 86.34  E-value: 1.98e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 254 RLPEHDIKIYFRPTD--FIQINDQVNRQAVAQAIALLDPGPRDTaLDLFCGLGNFTLPLARRVQGVLGIEAEPGLVEGAR 331
Cdd:pfam05958 162 TLPVAGREFIYRQVEnsFTQPNAAVNIKMLEWACDVTQGSKGDL-LELYCGNGNFSLALARNFRKVLATEIAKPSVAAAQ 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 332 RNAAANGVANAEF---RAANLYDAVSAAPPW--------GDLRCDKLLLDPPRSGA-IEAIKLLpsPGPERIVYISCYPV 399
Cdd:pfam05958 241 YNIAANNIDNVQIirmSAEEFTQAMNGVREFnrlkgidlKSYNCSTIFVDPPRAGLdPETLKLV--QAYPRILYISCNPE 318

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1083764560 400 TLARDSEYLVHArgYRLAAAGVMDMFPHTSHVES 433
Cdd:pfam05958 319 TLCANLEQLSKT--HRVERFALFDQFPYTHHMEC 350
AdoMet_MTases cd02440
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
 295-387 1.11e-05

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


Pssm-ID: 100107 [Multi-domain]  Cd Length: 107  Bit Score: 43.96  E-value: 1.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 295 TALDLFCGLGNFTLPLARRVQG-VLGIEAEPGLVEGARRNAAANGVANAEFRAANLYDavsaAPPWGDLRCDKLLLDPP- 372
Cdd:cd02440     1 RVLDLGCGTGALALALASGPGArVTGVDISPVALELARKAAAALLADNVEVLKGDAEE----LPPEADESFDVIISDPPl 76

                          90       100
                  ....*....|....*....|.
gi 1083764560 373 ------RSGAIEAIKLLPSPG 387
Cdd:cd02440    77 hhlvedLARFLEEARRLLKPG 97
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
 282-332 2.70e-05

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 43.83  E-value: 2.70e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1083764560 282 AQAIALLDPGPRDTALDLFCGLGNFTLPLARRVQGVLGIEAEPGLVEGARR 332
Cdd:COG2226    12 EALLAALGLRPGARVLDLGCGTGRLALALAERGARVTGVDISPEMLELARE 62
TRAM pfam01938
TRAM domain; This small domain has no known function. However it may perform a nucleic acid ...
 14-43 5.02e-05

TRAM domain; This small domain has no known function. However it may perform a nucleic acid binding role (Bateman A. unpublished observation).


Pssm-ID: 396497 [Multi-domain]  Cd Length: 59  Bit Score: 40.66  E-value: 5.02e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1083764560  14 VESLSHDGRGVAHV-GGKAVFIEGALPGEEV 43
Cdd:pfam01938  12 VEGLSSNGEGIGRTdNGKVVFVPGALPGEFV 42
Tam COG4106
Trans-aconitate methyltransferase [Energy production and conversion];
292-332 2.12e-04

Trans-aconitate methyltransferase [Energy production and conversion];


Pssm-ID: 443282 [Multi-domain]  Cd Length: 100  Bit Score: 40.19  E-value: 2.12e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1083764560 292 PRDTALDLFCGLGNFTLPLARRVQG--VLGIEAEPGLVEGARR 332
Cdd:COG4106     1 PPRRVLDLGCGTGRLTALLAERFPGarVTGVDLSPEMLARARA 43
SmtA COG0500
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ...
 280-425 4.19e-04

SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


Pssm-ID: 440266 [Multi-domain]  Cd Length: 199  Bit Score: 41.44  E-value: 4.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 280 AVAQAIALLDPGPRD-TALDLFCGLGNFTLPLARRVQG-VLGIEAEPGLVEGARRNAAANGVANAEFRAANLYDAVSAAP 357
Cdd:COG0500    13 GLAALLALLERLPKGgRVLDLGCGTGRNLLALAARFGGrVIGIDLSPEAIALARARAAKAGLGNVEFLVADLAELDPLPA 92

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1083764560 358 PWGDLRCDKLLL---DP-PRSGAIEAIKLLPSPGPerIVYISCYPVTLARDSEYLVHARGYRLAAAGVMDMF 425
Cdd:COG0500    93 ESFDLVVAFGVLhhlPPeEREALLRELARALKPGG--VLLLSASDAAAALSLARLLLLATASLLELLLLLRL 162
COG3269 COG3269
Predicted RNA-binding protein, contains TRAM domain [General function prediction only];
14-43 4.30e-04

Predicted RNA-binding protein, contains TRAM domain [General function prediction only];


Pssm-ID: 442500 [Multi-domain]  Cd Length: 129  Bit Score: 40.04  E-value: 4.30e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 1083764560  14 VESLSHDGRGVAHVGGKAVFIEGALPGEEV 43
Cdd:COG3269    80 IEDIGKKGDGIARVEGFVIFVPGAEVGDRV 109
PRK08317 PRK08317
hypothetical protein; Provisional
 282-332 4.47e-04

hypothetical protein; Provisional


Pssm-ID: 181382 [Multi-domain]  Cd Length: 241  Bit Score: 41.46  E-value: 4.47e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1083764560 282 AQAIALLDPGPRDTALDLFCGLGNFTLPLARRVQG---VLGIEAEPGLVEGARR 332
Cdd:PRK08317    9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPegrVVGIDRSEAMLALAKE 62
COG4976 COG4976
Predicted methyltransferase, contains TPR repeat [General function prediction only];
278-363 1.15e-03

Predicted methyltransferase, contains TPR repeat [General function prediction only];


Pssm-ID: 444001 [Multi-domain]  Cd Length: 181  Bit Score: 39.60  E-value: 1.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1083764560 278 RQAVAQAIALLDPGPRDTALDLFCGLGNFTLPLARRVQGVLGIEAEPGLVEGARRNAAANGVANAEFRA----ANLYDAV 353
Cdd:COG4976    32 ALLAEELLARLPPGPFGRVLDLGCGTGLLGEALRPRGYRLTGVDLSEEMLAKAREKGVYDRLLVADLADlaepDGRFDLI 111

                          90
                  ....*....|...
gi 1083764560 354 SAA---PPWGDLR 363
Cdd:COG4976   112 VAAdvlTYLGDLA 124
UbiG COG2227
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ...
 286-351 2.70e-03

2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 441829 [Multi-domain]  Cd Length: 126  Bit Score: 37.69  E-value: 2.70e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1083764560 286 ALLDPGPRdtALDLFCGLGNFTLPLARRVQGVLGIEAEPGLVEGARRnaaANGVANAEFRAANLYD 351
Cdd:COG2227    20 RLLPAGGR--VLDVGCGTGRLALALARRGADVTGVDISPEALEIARE---RAAELNVDFVQGDLED 80
ksgA PRK14896
16S ribosomal RNA methyltransferase A;
274-332 3.87e-03

16S ribosomal RNA methyltransferase A;


Pssm-ID: 237852 [Multi-domain]  Cd Length: 258  Bit Score: 38.73  E-value: 3.87e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1083764560 274 DQ---VNRQAVAQAIALLDPGPRDTALDLFCGLGNFTLPLARRVQGVLGIEAEPGLVEGARR 332
Cdd:PRK14896    8 GQhflIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRD 69
rADc smart00650
Ribosomal RNA adenine dimethylases;
281-332 4.42e-03

Ribosomal RNA adenine dimethylases;


Pssm-ID: 128898  Cd Length: 169  Bit Score: 37.88  E-value: 4.42e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1083764560  281 VAQAIALLDPGPRDTALDLFCGLGNFTLPLARRVQGVLGIEAEPGLVEGARR 332
Cdd:smart00650   2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERAKRVTAIEIDPRLAPRLRE 53
Methyltransf_25 pfam13649
Methyltransferase domain; This family appears to be a methyltransferase domain.
 297-332 7.06e-03

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 463945 [Multi-domain]  Cd Length: 96  Bit Score: 36.00  E-value: 7.06e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1083764560 297 LDLFCGLGNFTLPLARRVQG-VLGIEAEPGLVEGARR 332
Cdd:pfam13649   2 LDLGCGTGRLTLALARRGGArVTGVDLSPEMLERARE 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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