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Conserved domains on  [gi|1125234594|gb|OLB82120|]
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ABC transporter permease [Actinobacteria bacterium 13_2_20CM_2_71_6]

Protein Classification

ABC transporter permease( domain architecture ID 10003065)

ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of substrates including gylcine betaine, choline, and carnitine

Gene Ontology:  GO:0140359|GO:0042626
PubMed:  15251200|25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 17-223 4.72e-55

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


:

Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 175.24  E-value: 4.72e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  17 WTNPGGVIERLTEHLRISAAAVLLGCLIAWPLGLWLGHRGRGGEIVVLVSNVTLAIPTLSLLTLISLtWIGFGEKAVILA 96
Cdd:COG1174    10 ADNRDGILALLLEHLLLVLLALLIALLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALLIP-LLGIGPAPAIIA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  97 LIVFAVPPLLANAYTGLREVDPEVRDAARGMGLSGWQLLYQVELPLSVPYLAAGFRTAAVQVVATASLAALVAGGGLGQI 176
Cdd:COG1174    89 LVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGAGGLGDL 168

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1125234594 177 IAEGFGLGigvAGGQVVAGGLLVAGLALLVEGVFAVTERLVTPRPLR 223
Cdd:COG1174   169 IFDGLQLN---NTALILAGAILVALLALLVDLLLALLERLLTPRGLR 212
 
Name Accession Description Interval E-value
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 17-223 4.72e-55

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 175.24  E-value: 4.72e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  17 WTNPGGVIERLTEHLRISAAAVLLGCLIAWPLGLWLGHRGRGGEIVVLVSNVTLAIPTLSLLTLISLtWIGFGEKAVILA 96
Cdd:COG1174    10 ADNRDGILALLLEHLLLVLLALLIALLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALLIP-LLGIGPAPAIIA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  97 LIVFAVPPLLANAYTGLREVDPEVRDAARGMGLSGWQLLYQVELPLSVPYLAAGFRTAAVQVVATASLAALVAGGGLGQI 176
Cdd:COG1174    89 LVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGAGGLGDL 168

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1125234594 177 IAEGFGLGigvAGGQVVAGGLLVAGLALLVEGVFAVTERLVTPRPLR 223
Cdd:COG1174   169 IFDGLQLN---NTALILAGAILVALLALLVDLLLALLERLLTPRGLR 212
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
37-190 8.72e-12

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 63.57  E-value: 8.72e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  37 AVLLGCLIAWPLGLWLGHRGRGGEIVVLVSNVTLAIPTLSLLTLISLTWiGFGEKAVILALIVFAVPPLLANAYTGLREV 116
Cdd:PRK10952  156 ALLFCIVIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLF-GIGNVPGVVVTIIFALPPIVRLTILGINQV 234

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1125234594 117 DPEVRDAARGMGLSGWQLLYQVELPLSVPYLAAGFRTAAVQVVATASLAALVAGGGLGQIIAEGFG---LGIGVAGG 190
Cdd:PRK10952  235 PADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGrldMGLATVGG 311
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 47-180 2.36e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 60.78  E-value: 2.36e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  47 PLGLWLG--HRGRGGEIVVLVSNVTLAIP----TLSLLTLISLTWIGFGEKAVILALIVFAVPPLLANAYTGLREVDPEV 120
Cdd:pfam00528   3 PLGIIAAlrRGRRLDRLLRPLIDLLQALPsfvlAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDL 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1125234594 121 RDAARGMGLSGWQLLYQVELPLSVPYLAAGFRTAAVQVVATASLAALV-AGGGLGQIIAEG 180
Cdd:pfam00528  83 VEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgSWPGLGLLLIEA 143
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 30-176 3.13e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 57.67  E-value: 3.13e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  30 HLRISAAAVLLGCLIAWPLGLWLG-HRGRGGEIVVLVSNVTLAIP---------TLSLLTLISLTWIGFGEKAVILALIV 99
Cdd:cd06261     4 TLLLALIATLLALVLGLLLGIILArKRGKLDRLLRRIIDLLLSLPslvlglllvLLFGVLLGWGILPGLGLPALILALLL 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1125234594 100 FAvPPLLANAYTGLREVDPEVRDAARGMGLSGWQLLYQVELPLSVPYLAAGFRTAAVQVVATASLAALVAGGGLGQI 176
Cdd:cd06261    84 IA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP 159
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 31-135 3.85e-06

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 46.00  E-value: 3.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  31 LRISAAAVLLGCLIAWPLGLWLGHRG-RGGEIVVLVSNVTLAIPTLSLLTLISLT--------WIG--FGEKAVILALIV 99
Cdd:NF038017    2 LRVSGTATLIAALIGIPLGALLALRRfPGRRLVISLLNTLMGLPPVVVGLIVYLLlsrsgplgFLGllYTPTAMIIAQAV 81

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1125234594 100 FAVPPLLANAYTGLREVDPEVRDAARGMGLSGWQLL 135
Cdd:NF038017   82 LALPIVAGLTLAAVQGLDPELRLQILSLGATRWQAL 117
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 14-183 5.23e-03

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 37.14  E-value: 5.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  14 PLNWTNPGGVIERLTEHLRISAAAVLLGCLIAWPLGLW----LGHRGRGGEIVVLVSNVTLAIPtLSLLTLISLTWIGFG 89
Cdd:TIGR01097  47 PPDWSYLPRILKALLETLAMAILGTVLAAVLAVPLALLaarnITPSPWLYGLARLLLNFLRAIP-ELVWALIFVAAVGLG 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  90 EKAVILALIVFAVpPLLANAYT-GLREVDPEVRDAARGMGLSGWQLLYQVELPLSVPYLAA--------GFRTAAVqvva 160
Cdd:TIGR01097 126 PFAGVLALAFHTV-GFLGKLFAeAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFLSytlyrfeiNVRAAAV---- 200

                         170       180
                  ....*....|....*....|...
gi 1125234594 161 taslAALVAGGGLGQIIAEGFGL 183
Cdd:TIGR01097 201 ----LGLVGAGGIGLELDTAIGL 219
 
Name Accession Description Interval E-value
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 17-223 4.72e-55

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 175.24  E-value: 4.72e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  17 WTNPGGVIERLTEHLRISAAAVLLGCLIAWPLGLWLGHRGRGGEIVVLVSNVTLAIPTLSLLTLISLtWIGFGEKAVILA 96
Cdd:COG1174    10 ADNRDGILALLLEHLLLVLLALLIALLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALLIP-LLGIGPAPAIIA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  97 LIVFAVPPLLANAYTGLREVDPEVRDAARGMGLSGWQLLYQVELPLSVPYLAAGFRTAAVQVVATASLAALVAGGGLGQI 176
Cdd:COG1174    89 LVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGAGGLGDL 168

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1125234594 177 IAEGFGLGigvAGGQVVAGGLLVAGLALLVEGVFAVTERLVTPRPLR 223
Cdd:COG1174   169 IFDGLQLN---NTALILAGAILVALLALLVDLLLALLERLLTPRGLR 212
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 27-184 4.00e-16

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 74.80  E-value: 4.00e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  27 LTEHLRISAAAVLLGCLIAW----PLGLWLGHRGRGGEIVVLVSNVTLAIPTLSLLTLISLtWIGFGEKAVILALIVFAV 102
Cdd:COG0600    59 LWEHLLASLLRVLLGFALAAllgvPLGLLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLIL-WFGIGEASKIFVIFLGAF 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594 103 PPLLANAYTGLREVDPEVRDAARGMGLSGWQLLYQVELPLSVPYLAAGFRTAAVQVVATASLAALVAGG-GLGQIIAEGF 181
Cdd:COG0600   138 FPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASsGLGYLILDAR 217


                  ...
gi 1125234594 182 GLG 184
Cdd:COG0600   218 QLL 220
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
37-190 8.72e-12

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 63.57  E-value: 8.72e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  37 AVLLGCLIAWPLGLWLGHRGRGGEIVVLVSNVTLAIPTLSLLTLISLTWiGFGEKAVILALIVFAVPPLLANAYTGLREV 116
Cdd:PRK10952  156 ALLFCIVIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLF-GIGNVPGVVVTIIFALPPIVRLTILGINQV 234

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1125234594 117 DPEVRDAARGMGLSGWQLLYQVELPLSVPYLAAGFRTAAVQVVATASLAALVAGGGLGQIIAEGFG---LGIGVAGG 190
Cdd:PRK10952  235 PADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGrldMGLATVGG 311
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 47-180 2.36e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 60.78  E-value: 2.36e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  47 PLGLWLG--HRGRGGEIVVLVSNVTLAIP----TLSLLTLISLTWIGFGEKAVILALIVFAVPPLLANAYTGLREVDPEV 120
Cdd:pfam00528   3 PLGIIAAlrRGRRLDRLLRPLIDLLQALPsfvlAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDL 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1125234594 121 RDAARGMGLSGWQLLYQVELPLSVPYLAAGFRTAAVQVVATASLAALV-AGGGLGQIIAEG 180
Cdd:pfam00528  83 VEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgSWPGLGLLLIEA 143
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 30-176 3.13e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 57.67  E-value: 3.13e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  30 HLRISAAAVLLGCLIAWPLGLWLG-HRGRGGEIVVLVSNVTLAIP---------TLSLLTLISLTWIGFGEKAVILALIV 99
Cdd:cd06261     4 TLLLALIATLLALVLGLLLGIILArKRGKLDRLLRRIIDLLLSLPslvlglllvLLFGVLLGWGILPGLGLPALILALLL 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1125234594 100 FAvPPLLANAYTGLREVDPEVRDAARGMGLSGWQLLYQVELPLSVPYLAAGFRTAAVQVVATASLAALVAGGGLGQI 176
Cdd:cd06261    84 IA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP 159
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
31-172 1.69e-09

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 57.09  E-value: 1.69e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  31 LRISAAAVLLGCLIAWPLGLWLG-HRGRGGEIVVLVSNVTLAIPTL-------SLLTLISLTWIGFGEKAVILALIVFAV 102
Cdd:COG1178   344 LLLALLAALLAVLLALLLAYLVRrRRGRLARLLDRLAMLPYAVPGIvlglgllLLFNRPLPLLLYGTLAILVLAYVVRFL 423

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594 103 PPLLANAYTGLREVDPEVRDAARGMGLSGWQLLYQVELPLSVPYLAAGFRTAAVQVVATASLAALVAGGG 172
Cdd:COG1178   424 PFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPG 493
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 31-151 3.09e-07

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 49.72  E-value: 3.09e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  31 LRISAAAVLLGCLIAWPLGLWLG-HRGRGGEIVVLVSNVTLAIPTLSLLTLISLTWIGFGEK----AVILALIVFAVPPL 105
Cdd:COG1177    67 LLIALLSTLLATVLGTPAALALArYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSgglwGLILAHVVFTLPFV 146

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1125234594 106 LANAYTGLREVDPEVRDAARGMGLSGWQLLYQVELPLSVPYLAAGF 151
Cdd:COG1177   147 VLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGA 192
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
4-154 1.38e-06

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 48.01  E-value: 1.38e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594   4 LQQAIQWLNDPLnWTNPGGVIE---------RLTEHLRISAAAVLLGCLIAWPLGLWLG---HRGRGGEIVVLVSNVTLA 71
Cdd:PRK11365   27 LASSVGWLSTRI-LPSPEGVVTafwtlsasgELWQHLAISSWRALIGFSIGGSLGLILGlisGLSRWGERLLDTSIQMLR 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  72 IPTLSLLTLISLTWIGFGEKAVILALIVFAVPPLLANAYTGLREVDPEVRDAARGMGLSGWQLLYQVELPLSVPYLAAGF 151
Cdd:PRK11365  106 NVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGV 185


                  ...
gi 1125234594 152 RTA 154
Cdd:PRK11365  186 RFA 188
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 86-151 1.69e-06

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 47.82  E-value: 1.69e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1125234594  86 IGFGEKAVILALIVFAVPPLLANAYTGLREVDPEVRDAARGMGLSGWQLLYQVELPLSVPYLAAGF 151
Cdd:COG0555   132 VAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGF 197
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 31-135 3.85e-06

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 46.00  E-value: 3.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  31 LRISAAAVLLGCLIAWPLGLWLGHRG-RGGEIVVLVSNVTLAIPTLSLLTLISLT--------WIG--FGEKAVILALIV 99
Cdd:NF038017    2 LRVSGTATLIAALIGIPLGALLALRRfPGRRLVISLLNTLMGLPPVVVGLIVYLLlsrsgplgFLGllYTPTAMIIAQAV 81

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1125234594 100 FAVPPLLANAYTGLREVDPEVRDAARGMGLSGWQLL 135
Cdd:NF038017   82 LALPIVAGLTLAAVQGLDPELRLQILSLGATRWQAL 117
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
92-151 1.08e-05

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 45.92  E-value: 1.08e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  92 AVILALIVFAVPPLLANAYTGLREVDPEVRDAARGMGLSGWQLLYQVELPLSVPYLAAGF 151
Cdd:COG1178   141 GIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGA 200
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 88-151 6.50e-05

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 43.21  E-value: 6.50e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1125234594  88 FGEKAVILAL----IVFAVPPLlanaYTGLREVDPEVRDAARGMGLSGWQLLYQVELPLSVPYLAAGF 151
Cdd:COG1176   152 YTEFAVVIGLvyvyLPFMVLPL----YAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGS 215
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 88-150 2.94e-04

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 41.14  E-value: 2.94e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1125234594  88 FGEKAVILALIVFAVP----PLLAnaytGLREVDPEVRDAARGMGLSGWQLLYQVELPLSVPYLAAG 150
Cdd:PRK15050  159 YSPGGVILAEITFYTPfvvrPLLA----AFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAG 221
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 94-150 3.90e-04

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 40.74  E-value: 3.90e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1125234594  94 ILALIVFAVPPLLANAYTGLREVDPEVRDAARGMGLSGWQLLYQVELPLSVPYLAAG 150
Cdd:PRK09500  131 LFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAG 187
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
89-176 4.87e-04

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 40.10  E-value: 4.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  89 GEKAVILALIVFAVPPLLANAYTGLREVDPEVRDAARGMGLSGWQLLYQVELPLSVPYLAAGFRTAAVQVVATASLAALV 168
Cdd:PRK10782   88 GLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAV 167


                  ....*...
gi 1125234594 169 AGGGLGQI 176
Cdd:PRK10782  168 GAGGLGQI 175
COG4986 COG4986
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ...
 110-147 2.31e-03

ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];


Pssm-ID: 444010 [Multi-domain]  Cd Length: 576  Bit Score: 38.67  E-value: 2.31e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1125234594 110 YTGLREVDPEVRDAARGMGLSGWQLLYQVELPLSVPYL 147
Cdd:COG4986   153 YQSLRTVPRDLDEAARIFRLSGWQRFWRLELPFAMPGL 190
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 86-150 2.60e-03

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 38.13  E-value: 2.60e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1125234594  86 IGFGEKAVILALIVFAVPPLLANAYTGLREVDPEVRDAARGMGLSGWQLLYQVELPLSVPYLAAG 150
Cdd:PRK09497  146 IMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAG 210
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 14-183 5.23e-03

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 37.14  E-value: 5.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  14 PLNWTNPGGVIERLTEHLRISAAAVLLGCLIAWPLGLW----LGHRGRGGEIVVLVSNVTLAIPtLSLLTLISLTWIGFG 89
Cdd:TIGR01097  47 PPDWSYLPRILKALLETLAMAILGTVLAAVLAVPLALLaarnITPSPWLYGLARLLLNFLRAIP-ELVWALIFVAAVGLG 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125234594  90 EKAVILALIVFAVpPLLANAYT-GLREVDPEVRDAARGMGLSGWQLLYQVELPLSVPYLAA--------GFRTAAVqvva 160
Cdd:TIGR01097 126 PFAGVLALAFHTV-GFLGKLFAeAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFLSytlyrfeiNVRAAAV---- 200

                         170       180
                  ....*....|....*....|...
gi 1125234594 161 taslAALVAGGGLGQIIAEGFGL 183
Cdd:TIGR01097 201 ----LGLVGAGGIGLELDTAIGL 219
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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