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Conserved domains on  [gi|82654948|sp|P07744|]
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RecName: Full=Keratin, type II cytoskeletal 4; AltName: Full=Cytokeratin-4; Short=CK-4; AltName: Full=Cytoskeletal 57 kDa keratin; AltName: Full=Keratin-4; Short=K4; AltName: Full=Type-II keratin Kb4

Protein Classification

type II keratin( domain architecture ID 12177255)

type II keratin is an intermediate filament-forming protein that provides mechanical support and fulfills a variety of additional functions in epithelial cells

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Filament pfam00038
Intermediate filament protein;
146-458 2.10e-147

Intermediate filament protein;


:

Pssm-ID: 425436 [Multi-domain]  Cd Length: 313  Bit Score: 425.10  E-value: 2.10e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948   146 EREQIKTLNNKFASFIDKVRFLEQQNKVLETKWNLLQQQTTTtSPKSLDPFFETYINALRKNLDTLSNDKGRLQSELKMM 225
Cdd:pfam00038   2 EKEQLQELNDRLASYIDKVRFLEQQNKDLETKISELRQKKGA-EPSRLYSLYEREIRELRRQLDTLTVERARLQLELDNL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948   226 QDSVEDFKTKYEEEINKRTAAENDFVVLKKDVDAAYMIKVELEAKMESLKDEINFTRVLYEAELAQMQTHVSDTSVVLSM 305
Cdd:pfam00038  81 RLAAEDFRQKYEDELNLRQSAEADIVGLRKDLDEATLARVDLEMKIESLKEELAFLKKNHEEEVRELQSQVSDTQVNVEM 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948   306 DNNRNLDLDGIIAEVRAQYEDIARKSKAEVESWYQIKVQQLQMSADQHGDSLKTTKNEISELNRMIQRLRAEIENIKKQS 385
Cdd:pfam00038 161 DAARKLDLTSALAEIRAQYEEIAEKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRQIQSLEIELQSLKKQK 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 82654948   386 QTLQASVADAEQRGELALKDAYSKRAELETALQKAKEDLARLLRDYQALMNVKLALDVEIATYRKLLEGEECR 458
Cdd:pfam00038 241 ASLERQLAETEERYELQLADYQELISELEAELQQIRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
Keratin_2_head pfam16208
Keratin type II head;
14-142 2.01e-27

Keratin type II head;


:

Pssm-ID: 435217 [Multi-domain]  Cd Length: 159  Bit Score: 107.82  E-value: 2.01e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    14 GFSSGSAIAGGVKRVAFSSG----------SMSGGAGRCSSGGFGSRSLYNLGGHKSISMSVAGSCQGGGYGGAGGFGVG 83
Cdd:pfam16208   1 GFSSCSAVVPSRSRRSYSSVscsrsgggggGGGYGRGGGHGGGFGSRSLYNLGGSKSISISVAGGGSRPGGFGFGGGGGG 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 82654948    84 GYGAGFGAGGFGGGFGGSFN--------------------GRGGPGFPVCPAGGIQEVTINQSLLTPLQVEIDPEIQKI 142
Cdd:pfam16208  81 GFGFGFGGGAGGGFGGGGGFgggfgggggggggfggggfgGRGGFGGPPCPPGGIQEVTVNQSLLQPLNLEIDPEIQRV 159
 
Name Accession Description Interval E-value
Filament pfam00038
Intermediate filament protein;
146-458 2.10e-147

Intermediate filament protein;


Pssm-ID: 425436 [Multi-domain]  Cd Length: 313  Bit Score: 425.10  E-value: 2.10e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948   146 EREQIKTLNNKFASFIDKVRFLEQQNKVLETKWNLLQQQTTTtSPKSLDPFFETYINALRKNLDTLSNDKGRLQSELKMM 225
Cdd:pfam00038   2 EKEQLQELNDRLASYIDKVRFLEQQNKDLETKISELRQKKGA-EPSRLYSLYEREIRELRRQLDTLTVERARLQLELDNL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948   226 QDSVEDFKTKYEEEINKRTAAENDFVVLKKDVDAAYMIKVELEAKMESLKDEINFTRVLYEAELAQMQTHVSDTSVVLSM 305
Cdd:pfam00038  81 RLAAEDFRQKYEDELNLRQSAEADIVGLRKDLDEATLARVDLEMKIESLKEELAFLKKNHEEEVRELQSQVSDTQVNVEM 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948   306 DNNRNLDLDGIIAEVRAQYEDIARKSKAEVESWYQIKVQQLQMSADQHGDSLKTTKNEISELNRMIQRLRAEIENIKKQS 385
Cdd:pfam00038 161 DAARKLDLTSALAEIRAQYEEIAEKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRQIQSLEIELQSLKKQK 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 82654948   386 QTLQASVADAEQRGELALKDAYSKRAELETALQKAKEDLARLLRDYQALMNVKLALDVEIATYRKLLEGEECR 458
Cdd:pfam00038 241 ASLERQLAETEERYELQLADYQELISELEAELQQIRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
Keratin_2_head pfam16208
Keratin type II head;
14-142 2.01e-27

Keratin type II head;


Pssm-ID: 435217 [Multi-domain]  Cd Length: 159  Bit Score: 107.82  E-value: 2.01e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    14 GFSSGSAIAGGVKRVAFSSG----------SMSGGAGRCSSGGFGSRSLYNLGGHKSISMSVAGSCQGGGYGGAGGFGVG 83
Cdd:pfam16208   1 GFSSCSAVVPSRSRRSYSSVscsrsgggggGGGYGRGGGHGGGFGSRSLYNLGGSKSISISVAGGGSRPGGFGFGGGGGG 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 82654948    84 GYGAGFGAGGFGGGFGGSFN--------------------GRGGPGFPVCPAGGIQEVTINQSLLTPLQVEIDPEIQKI 142
Cdd:pfam16208  81 GFGFGFGGGAGGGFGGGGGFgggfgggggggggfggggfgGRGGFGGPPCPPGGIQEVTVNQSLLQPLNLEIDPEIQRV 159
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
201-453 1.60e-09

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 60.50  E-value: 1.60e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  201 INALRKNLDTLSNDKGRLQSELKMMQDSVEDFKTKYEEEINKRTAAENDFVVLKKDVDAAYMIKVELEAKMESLKDEINF 280
Cdd:COG1196  234 LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEE 313
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  281 trvlYEAELAQMQTHVSDTSVVLSMDNNRNLDLDGIIAEVRAQYEDIARKSKAEveswyqikvQQLQMSADQHGDSLKTT 360
Cdd:COG1196  314 ----LENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEEL---------EEKLSALLEELEELFEA 380
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  361 -KNEISELNRMIQRLRAEIENIKKQSQTLQASVADAEQRGELA---LKDAYSKRAELETALQKAKEDLARLLRDYQALMN 436
Cdd:COG1196  381 lREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLkeeLKELEAELEELQTELEELNEELEELEEQLEELRD 460
                        250
                 ....*....|....*..
gi 82654948  437 VKLALDVEIATYRKLLE 453
Cdd:COG1196  461 RLKELERELAELQEELQ 477
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
144-427 4.55e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 55.83  E-value: 4.55e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    144 TAEREQIKTLNNKFASFIDKVRFLEQQNKVLETKWNLLqqqttttspKSLDPFFETYINALRKNLDTLSNDKGRLQSELK 223
Cdd:TIGR02168  235 EELREELEELQEELKEAEEELEELTAELQELEEKLEEL---------RLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    224 MMQDSVEDFKTKYEEEINKRTAAENDFVVLKKDVDAAYMIKVELEAKMESLKDEInftrvlyEAELAQMQthvsdtsvvl 303
Cdd:TIGR02168  306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL-------EELEAELE---------- 368
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    304 smdnnrnlDLDGIIAEVRAQYEDIARKSKAEVESWYQIKVQQLQMSADQH--GDSLKTTKNEISELNRMIQR-----LRA 376
Cdd:TIGR02168  369 --------ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLErlEDRRERLQQEIEELLKKLEEaelkeLQA 440
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|.
gi 82654948    377 EIENIKKQSQTLQASVADAEQRGELALKdaysKRAELETALQKAKEDLARL 427
Cdd:TIGR02168  441 ELEELEEELEELQEELERLEEALEELRE----ELEEAEQALDAAERELAQL 487
46 PHA02562
endonuclease subunit; Provisional
162-414 3.95e-06

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 49.24  E-value: 3.95e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  162 DKVRFLEQQNKVLETKWNLLQQQTTTtspksldpfFETYINALRKnldtLSNDKgrlQSELKMMQDSVEDFKTKYEEEIN 241
Cdd:PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKT---------YNKNIEEQRK----KNGEN---IARKQNKYDELVEEAKTIKAEIE 237
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  242 KRTAAENDFVVLKKDVDAAY----MIKVELEAKMESLKDEINFTRVLYEAElAQMQThvsdtsvvLSMDNNRNLDLDGII 317
Cdd:PHA02562 238 ELTDELLNLVMDIEDPSAALnklnTAAAKIKSKIEQFQKVIKMYEKGGVCP-TCTQQ--------ISEGPDRITKIKDKL 308
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  318 AEVRAQYEDIarkskaeveswyQIKVQQLQMSADQHGD---SLKTTKNEISELNRMIQRLRAEIENIKKQSQTLQASVAD 394
Cdd:PHA02562 309 KELQHSLEKL------------DTAIDELEEIMDEFNEqskKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVD 376
                        250       260
                 ....*....|....*....|....*
gi 82654948  395 AEqrGELA-----LKDAYSKRAELE 414
Cdd:PHA02562 377 NA--EELAklqdeLDKIVKTKSELV 399
 
Name Accession Description Interval E-value
Filament pfam00038
Intermediate filament protein;
146-458 2.10e-147

Intermediate filament protein;


Pssm-ID: 425436 [Multi-domain]  Cd Length: 313  Bit Score: 425.10  E-value: 2.10e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948   146 EREQIKTLNNKFASFIDKVRFLEQQNKVLETKWNLLQQQTTTtSPKSLDPFFETYINALRKNLDTLSNDKGRLQSELKMM 225
Cdd:pfam00038   2 EKEQLQELNDRLASYIDKVRFLEQQNKDLETKISELRQKKGA-EPSRLYSLYEREIRELRRQLDTLTVERARLQLELDNL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948   226 QDSVEDFKTKYEEEINKRTAAENDFVVLKKDVDAAYMIKVELEAKMESLKDEINFTRVLYEAELAQMQTHVSDTSVVLSM 305
Cdd:pfam00038  81 RLAAEDFRQKYEDELNLRQSAEADIVGLRKDLDEATLARVDLEMKIESLKEELAFLKKNHEEEVRELQSQVSDTQVNVEM 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948   306 DNNRNLDLDGIIAEVRAQYEDIARKSKAEVESWYQIKVQQLQMSADQHGDSLKTTKNEISELNRMIQRLRAEIENIKKQS 385
Cdd:pfam00038 161 DAARKLDLTSALAEIRAQYEEIAEKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRQIQSLEIELQSLKKQK 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 82654948   386 QTLQASVADAEQRGELALKDAYSKRAELETALQKAKEDLARLLRDYQALMNVKLALDVEIATYRKLLEGEECR 458
Cdd:pfam00038 241 ASLERQLAETEERYELQLADYQELISELEAELQQIRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
Keratin_2_head pfam16208
Keratin type II head;
14-142 2.01e-27

Keratin type II head;


Pssm-ID: 435217 [Multi-domain]  Cd Length: 159  Bit Score: 107.82  E-value: 2.01e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    14 GFSSGSAIAGGVKRVAFSSG----------SMSGGAGRCSSGGFGSRSLYNLGGHKSISMSVAGSCQGGGYGGAGGFGVG 83
Cdd:pfam16208   1 GFSSCSAVVPSRSRRSYSSVscsrsgggggGGGYGRGGGHGGGFGSRSLYNLGGSKSISISVAGGGSRPGGFGFGGGGGG 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 82654948    84 GYGAGFGAGGFGGGFGGSFN--------------------GRGGPGFPVCPAGGIQEVTINQSLLTPLQVEIDPEIQKI 142
Cdd:pfam16208  81 GFGFGFGGGAGGGFGGGGGFgggfgggggggggfggggfgGRGGFGGPPCPPGGIQEVTVNQSLLQPLNLEIDPEIQRV 159
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
201-453 1.60e-09

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 60.50  E-value: 1.60e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  201 INALRKNLDTLSNDKGRLQSELKMMQDSVEDFKTKYEEEINKRTAAENDFVVLKKDVDAAYMIKVELEAKMESLKDEINF 280
Cdd:COG1196  234 LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEE 313
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  281 trvlYEAELAQMQTHVSDTSVVLSMDNNRNLDLDGIIAEVRAQYEDIARKSKAEveswyqikvQQLQMSADQHGDSLKTT 360
Cdd:COG1196  314 ----LENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEEL---------EEKLSALLEELEELFEA 380
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  361 -KNEISELNRMIQRLRAEIENIKKQSQTLQASVADAEQRGELA---LKDAYSKRAELETALQKAKEDLARLLRDYQALMN 436
Cdd:COG1196  381 lREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLkeeLKELEAELEELQTELEELNEELEELEEQLEELRD 460
                        250
                 ....*....|....*..
gi 82654948  437 VKLALDVEIATYRKLLE 453
Cdd:COG1196  461 RLKELERELAELQEELQ 477
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
144-427 4.55e-08

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 55.83  E-value: 4.55e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    144 TAEREQIKTLNNKFASFIDKVRFLEQQNKVLETKWNLLqqqttttspKSLDPFFETYINALRKNLDTLSNDKGRLQSELK 223
Cdd:TIGR02168  235 EELREELEELQEELKEAEEELEELTAELQELEEKLEEL---------RLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    224 MMQDSVEDFKTKYEEEINKRTAAENDFVVLKKDVDAAYMIKVELEAKMESLKDEInftrvlyEAELAQMQthvsdtsvvl 303
Cdd:TIGR02168  306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL-------EELEAELE---------- 368
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    304 smdnnrnlDLDGIIAEVRAQYEDIARKSKAEVESWYQIKVQQLQMSADQH--GDSLKTTKNEISELNRMIQR-----LRA 376
Cdd:TIGR02168  369 --------ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLErlEDRRERLQQEIEELLKKLEEaelkeLQA 440
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|.
gi 82654948    377 EIENIKKQSQTLQASVADAEQRGELALKdaysKRAELETALQKAKEDLARL 427
Cdd:TIGR02168  441 ELEELEEELEELQEELERLEEALEELRE----ELEEAEQALDAAERELAQL 487
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
188-434 5.37e-07

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 52.41  E-value: 5.37e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  188 TSPKSLDPFFETYINALRKNLDTLSNDKGRLQSELKMMQDSVEDFKTKYEEEINKRTAAENDFVVLKKDVDAAYMIKVEL 267
Cdd:COG1196  656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQL 735
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  268 EAKMESLKDEINF---TRVLYEAELAQMQTHVSDTSVVLSMDNNRNLDLDGI-------IAEVRAQYEDI---ARKSKAE 334
Cdd:COG1196  736 QSRLEELEEELEEleeELEELQERLEELEEELESLEEALAKLKEEIEELEEKrqalqeeLEELEEELEEAerrLDALERE 815
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  335 VESWyQIKVQQLQMSADQHGDSLKTTKNEISELNRMIQRLRAEIENIKKQSQTLQASVADAEQR----------GELALK 404
Cdd:COG1196  816 LESL-EQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDElkeleeekeeLEEELR 894
                        250       260       270
                 ....*....|....*....|....*....|
gi 82654948  405 DAYSKRAELETALQKAKEDLARLLRDYQAL 434
Cdd:COG1196  895 ELESELAELKEEIEKLRERLEELEAKLERL 924
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
313-450 7.37e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 51.98  E-value: 7.37e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    313 LDGIIAEVRAQYEDIARKSKAEVESWYQIKVQQLQMSADQHG--DSLKTTKNEISELNRMIQRLRAEIENIKKQSQTLQA 390
Cdd:TIGR02168  244 LQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEElqKELYALANEISRLEQQKQILRERLANLERQLEELEA 323
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 82654948    391 SVADAEQRGELALKDAYSKRAELETALQK---AKEDLARLLRDYQALMNVKLALDVEIATYRK 450
Cdd:TIGR02168  324 QLEELESKLDELAEELAELEEKLEELKEElesLEAELEELEAELEELESRLEELEEQLETLRS 386
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
217-453 2.99e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 50.06  E-value: 2.99e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    217 RLQSELKMMQDSVEDFKTKYEEEINKRTAAENDFVVLKKDVDAAYMIKVELEAKMESLKDEINftrvlyeaELAQMQTHV 296
Cdd:TIGR02168  681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE--------QLEERIAQL 752
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    297 SDTsvvlsmdnnrNLDLDGIIAEVRAQYEDiARKSKAEVESwyqiKVQQLQMSADQHGDSLKTTKNEISELNRMIQRLRA 376
Cdd:TIGR02168  753 SKE----------LTELEAEIEELEERLEE-AEEELAEAEA----EIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    377 EIENIKKQSQTLQASVADAEQRGELA---LKDAYSKRAELETALQKAKEDLARLLRDYQALMNVKLALDVEIATYRKLLE 453
Cdd:TIGR02168  818 EAANLRERLESLERRIAATERRLEDLeeqIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
46 PHA02562
endonuclease subunit; Provisional
162-414 3.95e-06

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 49.24  E-value: 3.95e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  162 DKVRFLEQQNKVLETKWNLLQQQTTTtspksldpfFETYINALRKnldtLSNDKgrlQSELKMMQDSVEDFKTKYEEEIN 241
Cdd:PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKT---------YNKNIEEQRK----KNGEN---IARKQNKYDELVEEAKTIKAEIE 237
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  242 KRTAAENDFVVLKKDVDAAY----MIKVELEAKMESLKDEINFTRVLYEAElAQMQThvsdtsvvLSMDNNRNLDLDGII 317
Cdd:PHA02562 238 ELTDELLNLVMDIEDPSAALnklnTAAAKIKSKIEQFQKVIKMYEKGGVCP-TCTQQ--------ISEGPDRITKIKDKL 308
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  318 AEVRAQYEDIarkskaeveswyQIKVQQLQMSADQHGD---SLKTTKNEISELNRMIQRLRAEIENIKKQSQTLQASVAD 394
Cdd:PHA02562 309 KELQHSLEKL------------DTAIDELEEIMDEFNEqskKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVD 376
                        250       260
                 ....*....|....*....|....*
gi 82654948  395 AEqrGELA-----LKDAYSKRAELE 414
Cdd:PHA02562 377 NA--EELAklqdeLDKIVKTKSELV 399
PRK01156 PRK01156
chromosome segregation protein; Provisional
134-456 1.30e-05

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 47.97  E-value: 1.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  134 EIDPEIQKIRTAE-REQIKTLNNKFASFIDKVRFLEQQNKVLETKWNLLQQQT------TTTSPKSLDPFFETY---INA 203
Cdd:PRK01156 401 EIDPDAIKKELNEiNVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSvcpvcgTTLGEEKSNHIINHYnekKSR 480
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  204 LRKNLDTLSNDKGRLQSE---LKMMQDSVEDFKT-KYEEEINKRTAAENDfvvLKKDVDAAYMIKvELEAKMESLKDEIN 279
Cdd:PRK01156 481 LEEKIREIEIEVKDIDEKivdLKKRKEYLESEEInKSINEYNKIESARAD---LEDIKIKINELK-DKHDKYEEIKNRYK 556
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  280 FTRVlyeAELAQMQTHVSDTSVVLSmdnnrNLDLDGIIA---EVRAQYEDIARKSK------AEVESWYQIKVQQLqmsa 350
Cdd:PRK01156 557 SLKL---EDLDSKRTSWLNALAVIS-----LIDIETNRSrsnEIKKQLNDLESRLQeieigfPDDKSYIDKSIREI---- 624
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  351 DQHGDSLKTTKNEISELNRMIQRLRAEIENIKKQSQTLQaSVADAEQRGELALKDAYSKRAELETALQKAKEDLARLLRD 430
Cdd:PRK01156 625 ENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEID-SIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLEST 703
                        330       340
                 ....*....|....*....|....*.
gi 82654948  431 YQALMNVKLALDVEIATYRKLLEGEE 456
Cdd:PRK01156 704 IEILRTRINELSDRINDINETLESMK 729
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
265-461 5.62e-05

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 45.86  E-value: 5.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  265 VELEAKMESLKDEINFTrvlyEAELAQMQTHVSDTSVVLSMDNNRNLDLDGIIAEVRAQYEDIARKSKAEVESWYQI--K 342
Cdd:COG1196  670 KELEEELAELEAQLEKL----EEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELeeE 745
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  343 VQQLQMSADQHGDSLKTTKNEISELNRMIQRLRAEIENIKKQSQTLQASVADAEQ---RGELALKDAYSKRAELETALQK 419
Cdd:COG1196  746 LEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEeleEAERRLDALERELESLEQRRER 825
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 82654948  420 AKEDLARLLRDYQALMNVKLALDVEIATYRKLLEGEECRMSG 461
Cdd:COG1196  826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEE 867
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
201-459 5.92e-05

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 45.86  E-value: 5.92e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  201 INALRKNLDTLSNDKGRLQSELKMMQDSVEDFKtKYEEEINKRTAAENDFVVLKKDvdaaymikvELEAKMESLKDEINf 280
Cdd:COG1196  181 LERTEENLERLEDLLEELEKQLEKLERQAEKAE-RYQELKAELRELELALLLAKLK---------ELRKELEELEEELS- 249
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  281 trvLYEAELAQMQTHVSDTSVvlsmdnnrnldldgIIAEVRAQYEDIARKSKAEVESWYQIK---------VQQLQMSAD 351
Cdd:COG1196  250 ---RLEEELEELQEELEEAEK--------------EIEELKSELEELREELEELQEELLELKeeieelegeISLLRERLE 312
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  352 QHGDSLKTTKNEISELNRMIQRLRAEIENIKKQSQTLQASVADAEQRGELALKDAYSKRAELETALQKAKEDLARLLRDY 431
Cdd:COG1196  313 ELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAEL 392
                        250       260
                 ....*....|....*....|....*...
gi 82654948  432 QALMNVKLALDVEIATYRKLLEGEECRM 459
Cdd:COG1196  393 AEIRNELEELKREIESLEERLERLSERL 420
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
201-453 3.04e-04

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 43.55  E-value: 3.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  201 INALRKNLDTLSNDK------GRLQSELKMMQDSVedFKTKYEEEINKRTAAENDFVVLKKDVDAAYMIKVELEAKMESL 274
Cdd:COG1196  195 LEELEKQLEKLERQAekaeryQELKAELRELELAL--LLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEEL 272
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  275 KDEINFTRVLYEaELAQMQTHVSDTSVVLSMDNNRNLD--LDGIIAEVRAQYEDIARKSKAEVESWYQIKVQQLQMSADQ 352
Cdd:COG1196  273 KSELEELREELE-ELQEELLELKEEIEELEGEISLLRErlEELENELEELEERLEELKEKIEALKEELEERETLLEELEQ 351
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  353 hgdSLKTTKNEISELNRMIQRLRAEIENIKKQSQTLQASVadaeqRGELALKDAysKRAELETALQKAKEDLARLLRDYQ 432
Cdd:COG1196  352 ---LLAELEEAKEELEEKLSALLEELEELFEALREELAEL-----EAELAEIRN--ELEELKREIESLEERLERLSERLE 421
                        250       260
                 ....*....|....*....|.
gi 82654948  433 ALMNVKLALDVEIATYRKLLE 453
Cdd:COG1196  422 DLKEELKELEAELEELQTELE 442
PRK09039 PRK09039
peptidoglycan -binding protein;
286-426 3.27e-04

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 43.03  E-value: 3.27e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  286 EAELAQMQTHVSDTSVVLSMDNNRNLDLDGIIAEVRAQYEDiARKSKAEVESWYQIKVQQLQMSADQHGD---SLKTTKN 362
Cdd:PRK09039  52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSA-AEAERSRLQALLAELAGAGAAAEGRAGElaqELDSEKQ 130
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 82654948  363 EISELNRMIQRLRAEIENIKKQSQTLQASVADAEQRGELALKDAYSKRAELETALQKAKEDLAR 426
Cdd:PRK09039 131 VSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNR 194
Smc COG1196
Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];
138-409 3.67e-04

Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 224117 [Multi-domain]  Cd Length: 1163  Bit Score: 43.55  E-value: 3.67e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  138 EIQKIRTAEREQIKTLNNKFASFIDKVRFLEQQNKVLETKWNLLQQQTTTTSPKSLDpfFETYINALRKNLDTLSNDKGR 217
Cdd:COG1196  748 ELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEE--AERRLDALERELESLEQRRER 825
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  218 LQSELKMMQDSVEDfktkYEEEINkrtAAENDFVVLKKDVDAAYMIKVELEAKMESLKDEINFTRVLY----------EA 287
Cdd:COG1196  826 LEQEIEELEEEIEE----LEEKLD---ELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKeeleeelrelES 898
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  288 ELAQMQTHVSDTSVVLSMDNNRNLDLDGIIAEVRAQYEDIarkSKAEVESWYQIKVQQLQMSADQHGDSLKTTKNEISEL 367
Cdd:COG1196  899 ELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEE---YEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEV 975
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 82654948  368 NRMIQRLRAEIENIKKQSQTLQASVADAEQRGELALKDAYSK 409
Cdd:COG1196  976 EERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDK 1017
PRK01156 PRK01156
chromosome segregation protein; Provisional
138-427 5.23e-04

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 42.97  E-value: 5.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  138 EIQKIRTAEREQIKTLNNKFASFIDKVRFLEQQNKVLETKWNLLQQQttttspksldpffetyINALRKNLDTLSNDKGR 217
Cdd:PRK01156 173 DVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKE----------------IERLSIEYNNAMDDYNN 236
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  218 LQSELKMMQdSVEDFKTKYEEEINKrtaaendfvvLKKDVDAAYMIKVELEAKMESLKDEINFTRVLYEAELAQMQTHVS 297
Cdd:PRK01156 237 LKSALNELS-SLEDMKNRYESEIKT----------AESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKN 305
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  298 DtsvvlsMDNNRNLdLDGIIAEVRaQYEDIARKSkAEVESWYQ--IKVQQLQMSADQHGDSLKTTKNEISELNRMIQRLR 375
Cdd:PRK01156 306 D------IENKKQI-LSNIDAEIN-KYHAIIKKL-SVLQKDYNdyIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLK 376
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 82654948  376 AEIENIKKQSQTLQASVADAEQRGELALKDAYSKRAELETALQKAKEDLARL 427
Cdd:PRK01156 377 KKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSL 428
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
317-470 8.33e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 42.35  E-value: 8.33e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    317 IAEVRAQYEDIARK---SKAEVESwYQIKVQQLQMSADQHGDSLKTTKNEISELNRMIQRLRAEIENIKKQSQTLQASVA 393
Cdd:TIGR02168  679 IEELEEKIEELEEKiaeLEKALAE-LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    394 DAEQR----------GELALKDAYSKRAELETALQKAKEDLARLLRDYQALMNVKLALDVEIATYRKLLEGEECRMSGEC 463
Cdd:TIGR02168  758 ELEAEieeleerleeAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837

                   ....*..
gi 82654948    464 KSAVSIS 470
Cdd:TIGR02168  838 RRLEDLE 844
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
125-440 1.02e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.97  E-value: 1.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    125 QSLLTPLQVEIDPEIQKIRtAEREQIKTLNNKFASFIDKVRFLEQQNKVLETKWNLLQQQTTTTSPKSLDPffETYINAL 204
Cdd:TIGR02168  711 EEELEQLRKELEELSRQIS-ALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA--EAEIEEL 787
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    205 RKNLDTLSNDKGRLQSELKMMQDSVEDFKTKYEEEINKRTAAENDFVVLKKDVDAAYMIKVELEAKMESLKDEINFTRVL 284
Cdd:TIGR02168  788 EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    285 YEAELAQmqthvsdtsvvlsmdnnrnldLDGIIAEVRAQYEDIARKSKAEveswyqikvQQLQMSADQHGDSLKTTKNEI 364
Cdd:TIGR02168  868 IEELESE---------------------LEALLNERASLEEALALLRSEL---------EELSEELRELESKRSELRREL 917
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 82654948    365 SELNRMIQRLRAEIENIKKQSQTLQASVADaeqRGELALKDAYSKRAELETALQKAKEDLARLLRDYQALMNVKLA 440
Cdd:TIGR02168  918 EELREKLAQLELRLEGLEVRIDNLQERLSE---EYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLA 990
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
201-434 1.38e-03

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 435022 [Multi-domain]  Cd Length: 1112  Bit Score: 41.63  E-value: 1.38e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    201 INALRKNLDTLSNDKGRLQSELKMMQDSVE----------DFKTKYEEEINKRTAA-ENDFVVLKKDVDAAYMIKVELEA 269
Cdd:pfam15921  414 IDHLRRELDDRNMEVQRLEALLKAMKSECQgqmerqmaaiQGKNESLEKVSSLTAQlESTKEMLRKVVEELTAKKMTLES 493
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    270 KMESLKDeinFTRVLYEAELAQMQTHVSDTSVVLSMD---------NNRNLDLDGIIAEVRAQYEDIARKSKAeVESWYQ 340
Cdd:pfam15921  494 SERTVSD---LTASLQEKERAIEATNAEITKLRSRVDlklqelqhlKNEGDHLRNVQTECEALKLQMAEKDKV-IEILRQ 569
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    341 iKVQQLQMSADQHGDSLKTTKNEISELNRMIQRLRAEIENIK-------KQSQTLQASVADAE-QRGEL---------AL 403
Cdd:pfam15921  570 -QIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKilkdkkdAKIRELEARVSDLElEKVKLvnagserlrAV 648
                          250       260       270
                   ....*....|....*....|....*....|.
gi 82654948    404 KDAYSKRAELETALQKAKEDLARLLRDYQAL 434
Cdd:pfam15921  649 KDIKQERDQLLNEVKTSRNELNSLSEDYEVL 679
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
199-431 1.58e-03

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 41.36  E-value: 1.58e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    199 TYINAlRKNLDTLSNDKgrlQSELKMMQDSVEDFKTKYEEEINKRTAAENdfvVLKKDVDA-----------------AY 261
Cdd:pfam12128  647 ALKNA-RLDLRRLFDEK---QSEKDKKNKALAERKDSANERLNSLEAQLK---QLDKKHQAwleeqkeqkreartekqAY 719
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    262 MIKVE--LEAKMESLKDEINFTRVLYEAELAQMQTHVSDTSVVLSMDNNRNLDLDGIIAEVRAQYEDIARKsKAEVESWY 339
Cdd:pfam12128  720 WQVVEgaLDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVR-RQEVLRYF 798
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    340 QIkvqqLQMSADQHGDSLKTTKNEIS--------ELNRMIQRLRAEIENIKKQSQTLQA---------SVADAEQRGELA 402
Cdd:pfam12128  799 DW----YQETWLQRRPRLATQLSNIEraiselqqQLARLIADTKLRRAKLEMERKASEKqqvrlsenlRGLRCEMSKLAT 874
                          250       260       270
                   ....*....|....*....|....*....|
gi 82654948    403 LK-DAYSKRAELETALQKAKEDLARLLRDY 431
Cdd:pfam12128  875 LKeDANSEQAQGSIGERLAQLEDLKLKRDY 904
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
264-423 1.67e-03

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 428520 [Multi-domain]  Cd Length: 660  Bit Score: 41.25  E-value: 1.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948   264 KVELEAKMESLKDEINFTRVLYEAELAQMQTHVSDTSVVLSMDNNRNLDLDGIIAEVRAQYEDIARKSKAEVE-----SW 338
Cdd:pfam05557   4 LIESKARLSQLQNEKKQMELEHKRARIELERKASALARQLERESDRNQELQKRIRLLEKREAEAEEALREQAElnrlkKK 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948   339 YQIKVQQLQMSADQH----GDSLKTTKNEISELNRMIQR-------LRAEIENIKKQSQTLQASVADAEQRGE------L 401
Cdd:pfam05557  84 NLEALNKKLNEKESQladaREVISCLKNELSELRRQIQRqelelssTNSELEELQERLDLQKAKAQEAEQLRQnleaqqS 163
                         170       180
                  ....*....|....*....|..
gi 82654948   402 ALKDAYSKRAELETALQKAKED 423
Cdd:pfam05557 164 SLAEAEQRIKELEFEIQSQEQD 185
COG1579 COG1579
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function ...
332-456 2.34e-03

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 224495 [Multi-domain]  Cd Length: 239  Bit Score: 39.66  E-value: 2.34e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948 332 KAEVESWYQIKVQQLQMS-----ADQHGDSLKTTKNEISELNRMIQRLRAEIENIKKQSQTLQASVADAEQR---GELAL 403
Cdd:COG1579   3 NNNLKSLLAIQKLDLEKDrleprIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERikrAEEKL 82
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 82654948 404 KDAYSKRA--ELETALQKAKEDLARLLRDYQALMNVKLALDVEIATYRKLLEGEE 456
Cdd:COG1579  83 SAVKDERElrALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE 137
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
202-443 3.48e-03

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 426331 [Multi-domain]  Cd Length: 1081  Bit Score: 40.14  E-value: 3.48e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    202 NALRKNLDTLSNDKGRLQSELKMMQDSVEDFKTKYEEEINKRTAAENDFVVLKKDVDAAymiKVELEAKmESLKDEINFT 281
Cdd:pfam01576  499 NSLQEQLEEEEEAKRNVERQLQTLQAQLSDLKKKLEEDAGAVEALEEGRKRLQRELEAL---TQRLEEK-AAAYDKLEKT 574
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    282 RVLYEAELAQMQTHVSDTSVVLSMDNNRNLDLDGIIAE---VRAQYEDiaRKSKAEVESwYQIKVQQLQMSAdqhgdSLK 358
Cdd:pfam01576  575 KNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEekaISARYAE--ERDRAEAEA-REKETKALSLAR-----ALE 646
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948    359 TTKNEISELNRMIQRLRAEIENIKKQSQTLQASVADAEQrgelalkdaySKRAeLETALQKAKEDLARLLRDYQALMNVK 438
Cdd:pfam01576  647 EALDAKEELERQNKQLRAEMEDLVSSKDDVGKNVHELER----------SKRA-LEQQVEEMKTQLEELEDELQATEDAK 715

                   ....*
gi 82654948    439 LALDV 443
Cdd:pfam01576  716 LRLEV 720
PRK11281 PRK11281
mechanosensitive channel MscK;
318-425 4.84e-03

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 39.89  E-value: 4.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948   318 AEVRAQYEDIARKSKAEVESwyQIKVQQLQMSADQHgDSLKTTKNEISELNRMIQRLRAEIENIKKQSQTLQASVADA-- 395
Cdd:PRK11281   39 ADVQAQLDALNKQKLLEAED--KLVQQDLEQTLALL-DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEEtr 115
                          90       100       110
                  ....*....|....*....|....*....|
gi 82654948   396 EQRGELALKDAYSKRAELETALQKAKEDLA 425
Cdd:PRK11281  116 ETLSTLSLRQLESRLAQTLDQLQNAQNDLA 145
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
201-434 6.11e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 39.28  E-value: 6.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  201 INALRKNLDTLSNDKGRLQSELKMMQDSVEDFKTKYEEEINKRT----AAENDFVVLKKdvdaaymIKVELEAKMESLKD 276
Cdd:PRK03918 551 LEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLkelePFYNEYLELKD-------AEKELEREEKELKK 623
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  277 EinftrvlyEAELAQMQTHVSDTsvvlsmdnnrnldlDGIIAEVRAQYEDIARKskaeveswyqikvqqlqMSADQHgds 356
Cdd:PRK03918 624 L--------EEELDKAFEELAET--------------EKRLEELRKELEELEKK-----------------YSEEEY--- 661
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948  357 lKTTKNEISELNRMIQRLRAEIENIKKQSQTLQASVADAEQRgelaLKDAYSKRAELETaLQKAKEDLARL---LRDYQA 433
Cdd:PRK03918 662 -EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEE----LEEREKAKKELEK-LEKALERVEELrekVKKYKA 735

                 .
gi 82654948  434 L 434
Cdd:PRK03918 736 L 736
COG1579 COG1579
Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function ...
269-438 7.34e-03

Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only];


Pssm-ID: 224495 [Multi-domain]  Cd Length: 239  Bit Score: 38.12  E-value: 7.34e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948 269 AKMESLKDEINFTRVLYEAELAQMQTHVSDtsvvlsmdnnrnLDLDgiIAEVRAQYEDIARKSKAEVEswyQIKVQQLQM 348
Cdd:COG1579  34 KKAKAELEALNKALEALEIELEDLENQVSQ------------LESE--IQEIRERIKRAEEKLSAVKD---ERELRALNI 96
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948 349 SADQHGDSLKTTKNEISELNRMIQRLRAEIENIKKQSQTLQASVADAEQRGELALKDAYSKRAELETALQKAKEDL-ARL 427
Cdd:COG1579  97 EIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLdPEL 176
                       170
                ....*....|.
gi 82654948 428 LRDYQALMNVK 438
Cdd:COG1579 177 LSEYERIRKNK 187
EzrA COG4477
Septation ring formation regulator EzrA [Cell cycle control, cell division, chromosome ...
172-428 7.65e-03

Septation ring formation regulator EzrA [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 226883 [Multi-domain]  Cd Length: 570  Bit Score: 38.90  E-value: 7.65e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948 172 KVLETKWNLLQQQTTTTSPKSldpffetYINAlRKNLDTLSNDKGRLQSELKMMQDSVEDFKTKYEEEINKRTAAENDFV 251
Cdd:COG4477 171 KKLENIEEELSQFVELTSSGD-------YIEA-REVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMK 242
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948 252 VlkkdvDAAYMIKVELEAKMESLKDEINFTRVLY--------EAELAQMQTHVSDT-----------SVVLSMDNNRNLD 312
Cdd:COG4477 243 E-----EGYHLEHVNIDSRLERLKEQLVENSELLtqleldeaEEELGLIQEKIESLydllereveakNVVEENLPILPDY 317
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82654948 313 LDGIIAEVRAQYEDIARKSK----AEVESWYQIKVQQLQMSADQHGDSL--KTTKNEI--SELNRMIQRLRAEIENIKKQ 384
Cdd:COG4477 318 LEKAKENNEHLKEEIERVKEsyrlAETELGSVRKFEKELKELESVLDEIleNIEAQEVaySELQDNLEEIEKALTDIEDE 397
                       250       260       270       280
                ....*....|....*....|....*....|....*....|....
gi 82654948 385 SQTLQASVADAEqrgelalKDAYSKRAELETaLQKAKEDLARLL 428
Cdd:COG4477 398 QEKVQEHLTSLR-------KDELEARENLER-LKSKLHEIKRYM 433
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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