NCBI Conserved Domain Search

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...

112-407

4.97e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]

Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 4.97e-12

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    112 KVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVREMRGAVLRLGAARGQLRLEQEHLLEDIAHVRQRLDEEARQRE 191
Cdd:TIGR02168  685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    192 EAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGEL-LGQIQGCGAAQAQAQAEARDALKCDVTSALR 270
Cdd:TIGR02168  765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtLLNEEAANLRERLESLERRIAATERRLEDLE 844

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    271 EIRAQLEGHAVQSTLQSEEwFRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEALKSTKESLERQRSELEDR 350
Cdd:TIGR02168  845 EQIEELSEDIESLAAEIEE-LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 94730399    351 hqadIASYQDAIQQLDSELRNTKwemaAQLRE-YQDLLNVKMALDIEIAAYRKLLEGE 407
Cdd:TIGR02168  924 ----LAQLELRLEGLEVRIDNLQ----ERLSEeYSLTLEEAEALENKIEDDEEEARRR 973

Smc

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...

98-387

8.70e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 8.70e-10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   98 QLQALNDRFAGyiDKVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVREMRGAVLRLGAARGQLRLEQEHLLEDIA 177
Cdd:COG1196  228 ELLLLKLRELE--AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  178 HVRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLGQIQGCGAAQAQAQAEA 257
Cdd:COG1196  306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  258 RDALkcDVTSALREIRAQLEghAVQSTLQSEEwfrVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEALKSTK 337
Cdd:COG1196  386 EELL--EALRAAAELAAQLE--ELEEAEEALL---ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 94730399  338 ESLERQRSELEDRHQADIASYQDAIQQLDsELRNTKWEMAAQLREYQDLL 387
Cdd:COG1196  459 EALLELLAELLEEAALLEAALAELLEELA-EAAARLLLLLEAEADYEGFL 507

PspC_subgroup_1

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...

594-932

2.07e-09

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.

Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 61.57 E-value: 2.07e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   594 KSPSEAKSPAEAKSPAEAkspAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAE---AKSPAE 670
Cdd:NF033838  108 KEKSEAELTSKTKKELDA---AFEQFKKDTLEPGKKVAEATKKVEEAEKKAKDQKEEDRRNYPTNTYKTLEleiAESDVE 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   671 AKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSpAEAKSPAEVKSPGEaKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAK 750
Cdd:NF033838  185 VKKAELELVKEEAKEPRDEEKIKQAKAKVESKK-AEATRLEKIKTDRE-KAEEEAKRRADAKLKEAVEKNVATSEQDKPK 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   751 SPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAkspVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPL 830
Cdd:NF033838  263 RRAKRGVLGEPATPDKKENDAKSSDSSVGEETLPSPSLKPEKK---VAEAEKKVEEAKKKAKDQKEEDRRNYPTNTYKTL 339

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   831 -------DVKSPEAQTP-VQEEAKHPTDIRPPEQVKSPAK-EKAKSPEKEEAKTSEKVApkKEEVKSPVKEEVKAKEPPk 901
Cdd:NF033838  340 eleiaesDVKVKEAELElVKEEAKEPRNEEKIKQAKAKVEsKKAEATRLEKIKTDRKKA--EEEAKRKAAEEDKVKEKP- 416

                         330       340       350
                  ....*....|....*....|....*....|.
gi 94730399   902 kVEEEKTLPTPKTEaKESKKDEAPKEAPKPK 932
Cdd:NF033838  417 -AEQPQPAPAPQPE-KPAPKPEKPAEQPKAE 445

2A1904

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...

687-944

2.33e-07

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]

Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 55.39 E-value: 2.33e-07

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    687 AEPKSPAEaKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVksPGEAKSPGEAKSPAEAKSpAEAKSPIE 766
Cdd:TIGR00927  636 AEAEHTGE-RTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEI--PAERKGEQEGEGEIEAKE-ADHKGETE 711

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    767 VKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDiKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAK 846
Cdd:TIGR00927  712 AEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEG-EGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGE 790

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    847 HPTD-----IRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKVEEEKTLPTPKTEAKESKK 921
Cdd:TIGR00927  791 MKGDegaegKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEE 870

                          250       260
                   ....*....|....*....|...
gi 94730399    922 DEAPKEAPKPKVEEKKETPTEKP 944
Cdd:TIGR00927  871 EEEEEEEEEEEEEEEEEEENEEP 893

PspC_subgroup_1

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...

579-872

8.69e-07

Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 53.09 E-value: 8.69e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   579 AEPKSPATVKSPGEAKSPSEAKSpAEAKSPAEAKSPAEaKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAE 658
Cdd:NF033838  195 EEAKEPRDEEKIKQAKAKVESKK-AEATRLEKIKTDRE-KAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKRGVLGE 272

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   659 AKSPAeaKSPAEAKSPAEvkSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAE---AKSPA 735
Cdd:NF033838  273 PATPD--KKENDAKSSDS--SVGEETLPSPSLKPEKKVAEAEKKVEEAKKKAKDQKEEDRRNYPTNTYKTLEleiAESDV 348

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   736 AVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSP-----EKAKTPVKegaKSPAEAKSPEKAKSPVKEDikpPAEAKSP 810
Cdd:NF033838  349 KVKEAELELVKEEAKEPRNEEKIKQAKAKVESKKAeatrlEKIKTDRK---KAEEEAKRKAAEEDKVKEK---PAEQPQP 422

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 94730399   811 EKAKSPVKEGAKPPEKAKPLDVKSPEAQT-------PVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEE 872
Cdd:NF033838  423 APAPQPEKPAPKPEKPAEQPKAEKPADQQaeedyarRSEEEYNRLTQQQPPKTEKPAQPSTPKTGWKQE 491

PspC_subgroup_1

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...

744-1068

2.40e-06

Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 51.55 E-value: 2.40e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   744 KSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKspEKAKSPVKEDIK--------------PPAEAKS 809
Cdd:NF033838  108 KEKSEAELTSKTKKELDAAFEQFKKDTLEPGKKVAEATKKVEEAE--KKAKDQKEEDRRnyptntyktleleiAESDVEV 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   810 PEKAKSPVKEGAKPPE-----KAKPLDVKSPEAQTPVQEEAKHPTDiRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKE 884
Cdd:NF033838  186 KKAELELVKEEAKEPRdeekiKQAKAKVESKKAEATRLEKIKTDRE-KAEEEAKRRADAKLKEAVEKNVATSEQDKPKRR 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   885 -------EVKSPVKEEVKAKEPPKKVEEEkTLPTP------KTEAKESKKDEAPKEAPKPKVEEKKETPTEKPK------ 945
Cdd:NF033838  265 akrgvlgEPATPDKKENDAKSSDSSVGEE-TLPSPslkpekKVAEAEKKVEEAKKKAKDQKEEDRRNYPTNTYKtlelei 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   946 ---DSTAEAKKEEAGEKKKAVASEEETPAKLGVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPA------ 1016
Cdd:NF033838  344 aesDVKVKEAELELVKEEAKEPRNEEKIKQAKAKVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEKPAeqpqpa 423

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  1017 ---APEKKDTKEEKTTESRKPEEKPKMEAKV-----KEDDKSLSKEPSKPKTEKAEKSSS 1068
Cdd:NF033838  424 papQPEKPAPKPEKPAEQPKAEKPADQQAEEdyarrSEEEYNRLTQQQPPKTEKPAQPST 483

DUF5585

pfam17823

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

565-861

3.77e-06

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 50.73 E-value: 3.77e-06

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    565 SPAEPKSPAEAKSPAEPKSPATvKSPGEAKSPSEAKSPAeakSPAEAKSPAEAKSPAeAKSPAEAKSPAEAKSPATVKSP 644
Cdd:pfam17823   99 EPATREGAADGAASRALAAAAS-SSPSSAAQSLPAAIAA---LPSEAFSAPRAAACR-ANASAAPRAAIAAASAPHAASP 173

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    645 GEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVkSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAA 724
Cdd:pfam17823  174 APRTAASSTTAASSTTAASSAPTTAASSAPATL-TPARGISTAATATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPAA 252

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    725 VKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAK---SPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDI 801
Cdd:pfam17823  253 LATLAAAAGTVASAAGTINMGDPHARRLSPAKhmpSDTMARNPAAPMGAQAQGPIIQVSTDQPVHNTAGEPTPSPSNTTL 332

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 94730399    802 KPP-----------------AEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAKhPTDIRPPEQVKSPA 861
Cdd:pfam17823  333 EPNtpksvastnlavvtttkAQAKEPSASPVPVLHTSMIPEVEATSPTTQPSPLLPTQGAAG-PGILLAPEQVATEA 408

KREPA2

cd23959

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...

593-746

2.30e-05

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.

Pssm-ID: 467780 [Multi-domain] Cd Length: 424 Bit Score: 48.33 E-value: 2.30e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  593 AKSPSEAKSPAeakSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPaeaksPAEAK 672
Cdd:cd23959  100 AMAPDESLGPF---RAARVPNPFSASSSTQRETHKTAQVAPPKAEPQTAPVTPFGQLPMFGQHPPPAKPL-----PAAAA 171

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 94730399  673 SPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVkSPAEAKSPAAVKSPGEAKSP 746
Cdd:cd23959  172 AQQSSASPGEVASPFASGTVSASPFATATDTAPSSGAPDGFPAEASAPSPFAA-PASAASFPAAPVANGEAATP 244

PRK11281

mechanosensitive channel MscK;

264-406

1.65e-04

mechanosensitive channel MscK;

Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.06 E-value: 1.65e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   264 DVTSALREIRAQLEGhAVQSTLQSEEwfrvRLDRLSEAAkVNTDAMRSAQEEITEYRRQLQARTTEL----EALKSTKES 339
Cdd:PRK11281   77 RQKEETEQLKQQLAQ-APAKLRQAQA----ELEALKDDN-DEETRETLSTLSLRQLESRLAQTLDQLqnaqNDLAEYNSQ 150

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 94730399   340 LERQRSELEdRHQADIASYQDAIQQLDSELRNTKWEMAAQLREYQDLLNVKMA-LDIEIAAYRKLLEG 406
Cdd:PRK11281  151 LVSLQTQPE-RAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQAlLNAQNDLQRKSLEG 217

PspC_subgroup_1

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...

511-776

1.11e-03

Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 43.08 E-value: 1.11e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   511 KETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPaePKSPAEPKSPAEakSPAEPKSPATVKSP 590
Cdd:NF033838  227 KTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKRGVLGEPATP--DKKENDAKSSDS--SVGEETLPSPSLKP 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   591 GEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAE---AKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKS 667
Cdd:NF033838  303 EKKVAEAEKKVEEAKKKAKDQKEEDRRNYPTNTYKTLEleiAESDVKVKEAELELVKEEAKEPRNEEKIKQAKAKVESKK 382

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   668 pAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEvkSPAEAKSPAevksPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPG 747
Cdd:NF033838  383 -AEATRLEKIKTDRKKAEEEAKRKAAEEDKVKE--KPAEQPQPA----PAPQPEKPAPKPEKPAEQPKAEKPADQQAEED 455

                         250       260
                  ....*....|....*....|....*....
gi 94730399   748 EAKSPAEAKSPAEAKSPIEVKSPEKAKTP 776
Cdd:NF033838  456 YARRSEEEYNRLTQQQPPKTEKPAQPSTP 484

PspC_subgroup_2

NF033839

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...

824-1076

1.94e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.

Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 42.06 E-value: 1.94e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   824 PEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKtsekVAPKKEEVKSPVKEEVKAKEPPKKV 903
Cdd:NF033839  281 QDTPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPE----VKPQPEKPKPEVKPQLETPKPEVKP 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   904 EEEKTLPTPKTEAkESKKDEAPKEAPKPKVEEKKETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKLGVKEEAKPKE 983
Cdd:NF033839  357 QPEKPKPEVKPQP-EKPKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQP 435

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   984 KTETTKTEAEDTKAKePSKPTETEKPKKEEMPAAPEKKDTKEEKTTESRKPEEKPKMEAKVKEDDKSLSKEPSKPKTEKA 1063
Cdd:NF033839  436 EKPKPEVKPQPEKPK-PEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPDNSKPQADDKKPSTPNNLSKDKQPSNQAST 514

                         250
                  ....*....|...
gi 94730399  1064 EKSSSTDQKESQP 1076
Cdd:NF033839  515 NEKATNKPKKSLP 527

PspC_subgroup_1

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...

506-734

5.05e-03

Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 40.77 E-value: 5.05e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   506 AASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPA 585
Cdd:NF033838  254 ATSEQDKPKRRAKRGVLGEPATPDKKENDAKSSDSSVGEETLPSPSLKPEKKVAEAEKKVEEAKKKAKDQKEEDRRNYPT 333

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   586 TVKSPGE---AKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSpAEAKSPATVKSpGEAKSPSEAKSPAEAKSP 662
Cdd:NF033838  334 NTYKTLEleiAESDVKVKEAELELVKEEAKEPRNEEKIKQAKAKVESKK-AEATRLEKIKT-DRKKAEEEAKRKAAEEDK 411

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 94730399   663 AEAKsPAEAKSPAEVKSP-GEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVK-SPGEAKSPAAVKSPAEAKSP 734
Cdd:NF033838  412 VKEK-PAEQPQPAPAPQPeKPAPKPEKPAEQPKAEKPADQQAEEDYARRSEEEyNRLTQQQPPKTEKPAQPSTP 484

Name

Accession

Description

Interval

E-value

Filament

pfam00038

Intermediate filament protein;

94-410

3.20e-112

Intermediate filament protein;

Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 350.76 E-value: 3.20e-112

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399     94 SEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQ-AGRAAMGELYEREVREMRGAVLRLGAARGQLRLEQEHL 172
Cdd:pfam00038    1 NEKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKgAEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDNL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    173 LEDIAHVRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLGQIQgcgaaQAQ 252
Cdd:pfam00038   81 RLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVS-----DTQ 155

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    253 AQAEARDALKCDVTSALREIRAQLEGHAVQSTLQSEEWFRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEA 332
Cdd:pfam00038  156 VNVEMDAARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQS 235

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 94730399    333 LKSTKESLERQRSELEDRHQADIASYQDAIQQLDSELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEECR 410
Cdd:pfam00038  236 LKKQKASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313

PTZ00121

MAEBL; Provisional

458-1090

8.89e-33

MAEBL; Provisional

Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 138.74 E-value: 8.89e-33

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   458 QTEEIRVTEgVTEEEDKEAQGQEGEEAEEGEEKEEEEGAAATSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPA 537
Cdd:PTZ00121 1083 AKEDNRADE-ATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAE 1161

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   538 EAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEA 617
Cdd:PTZ00121 1162 DARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEE 1241

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   618 KSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPA---- 693
Cdd:PTZ00121 1242 AKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeak 1321

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   694 ----EAKSPAEV--KSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAE------- 760
Cdd:PTZ00121 1322 kkaeEAKKKADAakKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADeakkkae 1401

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   761 --AKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVK----- 833
Cdd:PTZ00121 1402 edKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKkkaee 1481

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   834 ---SPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKV--------APKKEEVKSPVK----EEVKAKE 898
Cdd:PTZ00121 1482 akkADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAeeakkadeAKKAEEKKKADElkkaEELKKAE 1561

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   899 PPKKVEEEKTLPTPKTEAkeSKKDEAPKEAPKPKVEE-KKETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKL---- 973
Cdd:PTZ00121 1562 EKKKAEEAKKAEEDKNMA--LRKAEEAKKAEEARIEEvMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVeqlk 1639

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   974 GVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAAPEKKDTKEEKTteSRKPEEKPKMEA--KVKEDDKSL 1051
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL--KKEAEEAKKAEElkKKEAEEKKK 1717

                         650       660       670
                  ....*....|....*....|....*....|....*....
gi 94730399  1052 SKEPSKPKTEKAEKSSSTDQKESQPPEKTTEDKATKGEK 1090
Cdd:PTZ00121 1718 AEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK 1756

PTZ00121

MAEBL; Provisional

418-1083

3.50e-32

MAEBL; Provisional

Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 136.81 E-value: 3.50e-32

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   418 FSLTEGLPKIPSISTHIKVKSEEMIKVVEKSEKETVIVEGQtEEIRVTEGVTEEEDKEAQGQEGEEAEEGEEKEEEEGAA 497
Cdd:PTZ00121 1097 FGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAE-DARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDA 1175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   498 ATSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKS 577
Cdd:PTZ00121 1176 KKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIR 1255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   578 PAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPA--TVKSPGEAKSPSEA-- 653
Cdd:PTZ00121 1256 KFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeAKKKAEEAKKKADAak 1335

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   654 KSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAE---VKSPGEAKSPAAVKSPAE 730
Cdd:PTZ00121 1336 KKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADeakKKAEEDKKKADELKKAAA 1415

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   731 AKSPA--AVKSPGEAKSPGEAKSPAEAKSPA--------EAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKED 800
Cdd:PTZ00121 1416 AKKKAdeAKKKAEEKKKADEAKKKAEEAKKAdeakkkaeEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEA 1495

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   801 IKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQE-----EAKHPTDIRPPEQVKSpAKEKAKSPEKEEAKT 875
Cdd:PTZ00121 1496 KKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEakkaeEKKKADELKKAEELKK-AEEKKKAEEAKKAEE 1574

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   876 SEKVAPKKEEVKSPVkEEVKAKEPPKKVEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKETPTEKPKDSTAEAKKEE 955
Cdd:PTZ00121 1575 DKNMALRKAEEAKKA-EEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK 1653

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   956 AGEKKKAVASEEET---------PAKLGVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAAPEKKDTKEE 1026
Cdd:PTZ00121 1654 KAEEENKIKAAEEAkkaeedkkkAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAE 1733

                         650       660       670       680       690       700
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 94730399  1027 KTTESRKPEEKPKMEAKVKEDDKSLSKEPSKPKTEKAEKSSST------------DQKESQPPEKTTED 1083
Cdd:PTZ00121 1734 EAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEkeavieeeldeeDEKRRMEVDKKIKD 1802

PTZ00121

MAEBL; Provisional

288-1073

1.65e-28

MAEBL; Provisional

Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 124.48 E-value: 1.65e-28

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   288 EEWFRVRLDRLSEAAKVNtDAMRSAQE--EITEYRRQLQARTTElEALKSTKESLERQRSELEDRHQADIASYQDAIQQL 365
Cdd:PTZ00121 1101 EEAKKTETGKAEEARKAE-EAKKKAEDarKAEEARKAEDARKAE-EARKAEDAKRVEIARKAEDARKAEEARKAEDAKKA 1178

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   366 DSELRNTKWEMAAQLREYQDLLNVKMAldieiAAYRKLLEGEECRigfgpspfslteglpkipsisthiKVKSEEMIKVV 445
Cdd:PTZ00121 1179 EAARKAEEVRKAEELRKAEDARKAEAA-----RKAEEERKAEEAR------------------------KAEDAKKAEAV 1229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   446 EKSEKetviVEGQTEEIRVTEGVTEEEDKEAQGQEGEEAEEGEEKEEEEGAAATSPPAEEAASPEKETKSRVKEEAKSPG 525
Cdd:PTZ00121 1230 KKAEE----AKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKAD 1305

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   526 EAKSPGEAKSPAE--AKSPGEAKSPGEA--KSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKS 601
Cdd:PTZ00121 1306 EAKKKAEEAKKADeaKKKAEEAKKKADAakKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   602 PAEAKSPA-EAKSPAE--AKSPAEAKSPAEAKSPAE--AKSPATVKSPGEAKSPSEAKSPA-EAKSPAEAKSPAE--AKS 673
Cdd:PTZ00121 1386 KAEEKKKAdEAKKKAEedKKKADELKKAAAAKKKADeaKKKAEEKKKADEAKKKAEEAKKAdEAKKKAEEAKKAEeaKKK 1465

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   674 PAEVKSPGEAKSPAEPKSPA-EAKSPAE--VKSPAEAKSPAEVKSPG-EAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEA 749
Cdd:PTZ00121 1466 AEEAKKADEAKKKAEEAKKAdEAKKKAEeaKKKADEAKKAAEAKKKAdEAKKAEEAKKADEAKKAEEAKKADEAKKAEEK 1545

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   750 KSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEgAKPPEKAKP 829
Cdd:PTZ00121 1546 KKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKA-EEAKIKAEE 1624

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   830 LDVKSPEAQTPVQEEAKHPTDIRPPEQVKSpAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKVEEE--K 907
Cdd:PTZ00121 1625 LKKAEEEKKKVEQLKKKEAEEKKKAEELKK-AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEakK 1703

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   908 TLPTPKTEAKESKKDEAPK---EAPKPKVEEKKETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKLGVKE-----EA 979
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKkaeEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEkeaviEE 1783

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   980 KPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAAPEKKDTKEEKTTESRKPEEKPKMEAK-VKEDDKSLSKEPSKP 1058
Cdd:PTZ00121 1784 ELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADaFEKHKFNKNNENGED 1863

                         810
                  ....*....|....*
gi 94730399  1059 KTEKAEKSSSTDQKE 1073
Cdd:PTZ00121 1864 GNKEADFNKEKDLKE 1878

PTZ00449

104 kDa microneme/rhoptry antigen; Provisional

420-878

1.18e-25

104 kDa microneme/rhoptry antigen; Provisional

Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 114.79 E-value: 1.18e-25

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   420 LTEGLPKIPSISTHIKVKSEEMIKVVEKSEKETVIVEGQ-TEEIRVTEGVTEEEDKEAQGQEGEEAEEGEEKEEEEGAAA 498
Cdd:PTZ00449  442 VSDGAARLVHLRIKDRIPANNDIYMLKFDEYWTRISKIQfTQEIKKLIKKSKKKLAPIEEEDSDKHDEPPEGPEASGLPP 521

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   499 TSPPAEEAASPEKETKsrvkEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSP 578
Cdd:PTZ00449  522 KAPGDKEGEEGEHEDS----KESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKP 597

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   579 AEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPaeaKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAK---- 654
Cdd:PTZ00449  598 KRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSP---KRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKfkek 674

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   655 -----SPAEAKS---------PAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAE-VKSP-AEAKSPAEVKSPGE 718
Cdd:PTZ00449  675 fyddyLDAAAKSketkttvvlDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEpIGDPdAEQPDDIEFFTPPE 754

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   719 AKSPAAVKSPAEAKSPAA----VKSP---GEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSpe 791
Cdd:PTZ00449  755 EERTFFHETPADTPLPDIlaeeFKEEdihAETGEPDEAMKRPDSPSEHEDKPPGDHPSLPKKRHRLDGLALSTTDLES-- 832

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   792 KAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQV--KSPAKEKAKSPE 869
Cdd:PTZ00449  833 DAGRIAKDASGKIVKLKRSKSFDDLTTVEEAEEMGAEARKIVVDDDGTEADDEDTHPPEEKHKSEVrrRRPPKKPSKPKK 912


                  ....*....
gi 94730399   870 KEEAKTSEK 878
Cdd:PTZ00449  913 PSKPKKPKK 921

PTZ00449

104 kDa microneme/rhoptry antigen; Provisional

588-1016

2.34e-21

104 kDa microneme/rhoptry antigen; Provisional

Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 100.53 E-value: 2.34e-21

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   588 KSPGEAKSPSEAKSPAeaKSPAEAKSPAEAKSPA-EAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAK 666
Cdd:PTZ00449  506 KHDEPPEGPEASGLPP--KAPGDKEGEEGEHEDSkESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPK 583

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   667 SPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSP 746
Cdd:PTZ00449  584 DPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSP 663

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   747 GEAKSPAEAKSPAEAKSPIEVKSPEKAKTPV-KEGAKSPAEAKSPEKAKSPVKEDIK-PPAEAKSPEKAKSPVKEgakpP 824
Cdd:PTZ00449  664 KPPFDPKFKEKFYDDYLDAAAKSKETKTTVVlDESFESILKETLPETPGTPFTTPRPlPPKLPRDEEFPFEPIGD----P 739

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   825 EKAKPLDVkspEAQTPVQEEA----KHPTDIRPP----EQVKSP-AKEKAKSPEKEEAKTSekvAPKKEEVKSPVKEEVK 895
Cdd:PTZ00449  740 DAEQPDDI---EFFTPPEEERtffhETPADTPLPdilaEEFKEEdIHAETGEPDEAMKRPD---SPSEHEDKPPGDHPSL 813

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   896 AKEPPKKVEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKETPTEKPKDSTAEAKKEEAGEKKKAVASEEET-PAKLG 974
Cdd:PTZ00449  814 PKKRHRLDGLALSTTDLESDAGRIAKDASGKIVKLKRSKSFDDLTTVEEAEEMGAEARKIVVDDDGTEADDEDThPPEEK 893

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|..
gi 94730399   975 VKEEAKPKEKTETTkteaedTKAKEPSKPTETEKPKKEEMPA 1016
Cdd:PTZ00449  894 HKSEVRRRRPPKKP------SKPKKPSKPKKPKKPDSAFIPS 929

PTZ00449

104 kDa microneme/rhoptry antigen; Provisional

630-1087

1.06e-19

104 kDa microneme/rhoptry antigen; Provisional

Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 95.53 E-value: 1.06e-19

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   630 KSPAEAKSPATvkSPGEAKSPSEAKSPA-EAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPaevKSPAEAK 708
Cdd:PTZ00449  512 EGPEASGLPPK--APGDKEGEEGEHEDSkESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKP---EFPKDPK 586

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   709 SPAEVKSPGEAKSPAAVKSPAEAKSPaavKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAktpvkEGAKSPAEAK 788
Cdd:PTZ00449  587 HPKDPEEPKKPKRPRSAQRPTRPKSP---KLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERP-----EGPKIIKSPK 658

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   789 SPEKAKSPVKEDIKPP-------AEAKSPE-KAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAKHPTDirpPEQVKSP 860
Cdd:PTZ00449  659 PPKSPKPPFDPKFKEKfyddyldAAAKSKEtKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRD---EEFPFEP 735

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   861 AKEkaksPEKEEAKTSEKVAPkkeevksPVKEEVKAKEPPKKVeeektlPTPKTEAKESKKDEAPKEAPKPkveekkETP 940
Cdd:PTZ00449  736 IGD----PDAEQPDDIEFFTP-------PEEERTFFHETPADT------PLPDILAEEFKEEDIHAETGEP------DEA 792

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   941 TEKPKDSTAEAKKEEagekkkavASEEETPAKlgvKEEAKPKEKTETTKTEAEDTKAKEPS-KPTETEKPKkeempaape 1019
Cdd:PTZ00449  793 MKRPDSPSEHEDKPP--------GDHPSLPKK---RHRLDGLALSTTDLESDAGRIAKDASgKIVKLKRSK--------- 852

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 94730399  1020 kkdTKEEKTTESRKPEEKPKMEAKVKEDDKSLSKE----PSKPKTEKAEKSSSTDQKESQPPEKTTEDKATK 1087
Cdd:PTZ00449  853 ---SFDDLTTVEEAEEMGAEARKIVVDDDGTEADDedthPPEEKHKSEVRRRRPPKKPSKPKKPSKPKKPKK 921

PTZ00449

104 kDa microneme/rhoptry antigen; Provisional

642-1079

5.27e-18

104 kDa microneme/rhoptry antigen; Provisional

Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 89.75 E-value: 5.27e-18

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   642 KSPGEAKSPSEAKSPAEAKSPaeaKSPAEAKSPAevKSPGEAKSPAEPKSPA-EAKSPAEVKSPAEAKSPAEVKSPGEAK 720
Cdd:PTZ00449  491 KSKKKLAPIEEEDSDKHDEPP---EGPEASGLPP--KAPGDKEGEEGEHEDSkESDEPKEGGKPGETKEGEVGKKPGPAK 565

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   721 SPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPvkegaKSPAEAKSPEKAKSPVked 800
Cdd:PTZ00449  566 EHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIP-----KSPKRPESPKSPKRPP--- 637

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   801 ikPPAEAKSPEKAKSP-VKEGAKPPEKAKPldvkspeaqtpvqeeakhPTDIRPPEQVKSPAKEKAkspekeeAKTSE-K 878
Cdd:PTZ00449  638 --PPQRPSSPERPEGPkIIKSPKPPKSPKP------------------PFDPKFKEKFYDDYLDAA-------AKSKEtK 690

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   879 VAPKKEEVKSPVKEEVKAKEPPKKVEEEKTLPtPKTEAKESKKDEAPKE--APKPKVEEKKETPTEKPKDSTAEAKKEEA 956
Cdd:PTZ00449  691 TTVVLDESFESILKETLPETPGTPFTTPRPLP-PKLPRDEEFPFEPIGDpdAEQPDDIEFFTPPEEERTFFHETPADTPL 769

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   957 GEKKKAVASEEETPAKLGVKEEAKpkektettkteaedtkaKEPSKPTETEKPKKEEMPAAPEKKDTKEE---KTTE--- 1030
Cdd:PTZ00449  770 PDILAEEFKEEDIHAETGEPDEAM-----------------KRPDSPSEHEDKPPGDHPSLPKKRHRLDGlalSTTDles 832

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  1031 -----SRKPEEKP-KMEAKVKEDDKSL--SKEPSKPKTEKA---EKSSSTDQKESQPPEK 1079
Cdd:PTZ00449  833 dagriAKDASGKIvKLKRSKSFDDLTTveEAEEMGAEARKIvvdDDGTEADDEDTHPPEE 892

PHA03247

large tegument protein UL36; Provisional

501-1019

2.42e-17

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 88.07 E-value: 2.42e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   501 PPAEEAASPEKETKSRVKEEAKSPGEAKsPGEAKSPAEAKSPGEAKSPGEAKSPgeaKSPAEPKSPA-EPKSPAEAKSPA 579
Cdd:PHA03247 2561 PAAPDRSVPPPRPAPRPSEPAVTSRARR-PDAPPQSARPRAPVDDRGDPRGPAP---PSPLPPDTHApDPPPPSPSPAAN 2636

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   580 EPKSPATVKSPgEAKSPSEAKSPAEAKSPAEAKSPAEaksPAEAKSPAEAKSPAEAKsPATVKSPGEAKSPSEAKSPAEA 659
Cdd:PHA03247 2637 EPDPHPPPTVP-PPERPRDDPAPGRVSRPRRARRLGR---AAQASSPPQRPRRRAAR-PTVGSLTSLADPPPPPPTPEPA 2711

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   660 KSPAEAKSPAE-AKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVK 738
Cdd:PHA03247 2712 PHALVSATPLPpGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASL 2791

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   739 SPG--EAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSP 816
Cdd:PHA03247 2792 SESreSLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSP 2871

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   817 VKEGAKPPeKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKakspEKEEAKTSEKVAPKKEEVKSPVKEEVKA 896
Cdd:PHA03247 2872 AAKPAAPA-RPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQ----PQPQPPPPPQPQPPPPPPPRPQPPLAPT 2946

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   897 KEPPKKVEEEKTLPTPKTEAKESKKDEAPK-EAPKPKveEKKETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKLGV 975
Cdd:PHA03247 2947 TDPAGAGEPSGAVPQPWLGALVPGRVAVPRfRVPQPA--PSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVSL 3024

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|..
gi 94730399   976 KE--------EAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAAPE 1019
Cdd:PHA03247 3025 KQtlwppddtEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPE 3076

PHA03247

large tegument protein UL36; Provisional

500-845

5.79e-17

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 86.92 E-value: 5.79e-17

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   500 SPPAEEAASPEKETKSRVKEEAKSPGEAKSPgEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEP----KSPAEPKSPAEA 575
Cdd:PHA03247 2617 LPPDTHAPDPPPPSPSPAANEPDPHPPPTVP-PPERPRDDPAPGRVSRPRRARRLGRAAQASSPpqrpRRRAARPTVGSL 2695

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   576 KSPAEPKSPatvksPGEAKSPSEAKSPAEAKSPAEAksPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKS 655
Cdd:PHA03247 2696 TSLADPPPP-----PPTPEPAPHALVSATPLPPGPA--AARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPA 2768

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   656 PAEAKSPAeakSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVK-SPAEAKSP 734
Cdd:PHA03247 2769 PAPPAAPA---AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPtAPPPPPGP 2845

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   735 -AAVKSPGEAKSPGE--AKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKS-PAEAKSPEKAKSPvkediKPPAEAKSP 810
Cdd:PHA03247 2846 pPPSLPLGGSVAPGGdvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESfALPPDQPERPPQP-----QAPPPPQPQ 2920

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 94730399   811 EKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEA 845
Cdd:PHA03247 2921 PQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955

PRK07003

DNA polymerase III subunit gamma/tau;

520-764

1.38e-15

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 81.82 E-value: 1.38e-15

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   520 EAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAK-SPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSE 598
Cdd:PRK07003  373 PARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALApKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAK 452

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   599 AKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATvkspgeaksPSEAKSPAEAKSPAEAKSPAEAKSPAEVK 678
Cdd:PRK07003  453 ANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAP---------RAAAPSAATPAAVPDARAPAAASREDAPA 523

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   679 SPGEAKSPAEPKSPAEAKSPAEVKSPAEA--------------KSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAK 744
Cdd:PRK07003  524 AAAPPAPEARPPTPAAAAPAARAGGAAAAldvlrnagmrvssdRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARA 603

                         250       260
                  ....*....|....*....|
gi 94730399   745 SPGEAKSPAEAKSPAEAKSP 764
Cdd:PRK07003  604 ATGDAPPNGAARAEQAAESR 623

MSCRAMM_ClfA

NF033609

MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ...

502-845

1.09e-14

Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 79.18 E-value: 1.09e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   502 PAEEAASPEK----------ETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKS 571
Cdd:NF033609  551 PGEIEPIPEDsdsdpgsdsgSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDSASDSDSASDSDS 630

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   572 PAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPS 651
Cdd:NF033609  631 ASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 710

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   652 EAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEA 731
Cdd:NF033609  711 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDS 790

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   732 KSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPE 811
Cdd:NF033609  791 DSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSESDSNSDSESGSNN 870

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 94730399   812 KAKSP--VKEGAKPPEKAKPLDVKSPEAQTPVQEEA 845
Cdd:NF033609  871 NVVPPnsPKNGTNASNKNEAKDSKEPLPDTGSEDEA 906

PRK07003

DNA polymerase III subunit gamma/tau;

579-855

5.22e-14

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 76.81 E-value: 5.22e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   579 AEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKsPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPseAKSPAE 658
Cdd:PRK07003  372 VPARVAGAVPAPGARAAAAVGASAVPAVTAVTGA-AGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDA--ADGDAP 448

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   659 AKSPAEAKSPAEAKSPAEVKSPGEAKSP-AEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAV 737
Cdd:PRK07003  449 VPAKANARASADSRCDERDAQPPADSGSaSAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPP 528

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   738 KSPGEAKSPGEAKSPAEAKSPAEAkspIEVKSPEKAKTPVKEGAKSPAEAKSPEKakspvkediKPPAEAKSPEKAKSPV 817
Cdd:PRK07003  529 APEARPPTPAAAAPAARAGGAAAA---LDVLRNAGMRVSSDRGARAAAAAKPAAA---------PAAAPKPAAPRVAVQV 596

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 94730399   818 -KEGAKPPEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPE 855
Cdd:PRK07003  597 pTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDIPPD 635

PHA03307

transcriptional regulator ICP4; Provisional

499-816

5.50e-14

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 77.13 E-value: 5.50e-14

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   499 TSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGeakspgeaksPGEAKSPAEPKSPAEPKSPAEAKSP 578
Cdd:PHA03307   63 DRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPT----------PPGPSSPDPPPPTPPPASPPPSPAP 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   579 AEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAE 658
Cdd:PHA03307  133 DLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSP 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   659 AKSPAEAKSPAEAKSPAeVKSPGEAKSPAEPKSPAEAKSPAE---VKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPA 735
Cdd:PHA03307  213 ISASASSPAPAPGRSAA-DDAGASSSDSSSSESSGCGWGPENecpLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSP 291

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   736 AVKSPgeAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKT-PVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAK 814
Cdd:PHA03307  292 RERSP--SPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTsSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRP 369


                  ..
gi 94730399   815 SP 816
Cdd:PHA03307  370 RP 371

PRK12323

DNA polymerase III subunit gamma/tau;

577-781

5.07e-13

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 73.37 E-value: 5.07e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   577 SPAEPKSpATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAK-SPAEAKSPATVKSPGEAKSPSEAKS 655
Cdd:PRK12323  373 GPATAAA-APVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARrSPAPEALAAARQASARGPGGAPAPA 451

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   656 PAEAKSPAEAKSPAEAKSPAevkSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPa 735
Cdd:PRK12323  452 PAPAAAPAAAARPAAAGPRP---VAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIP- 527

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 94730399   736 avkSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGA 781
Cdd:PRK12323  528 ---DPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASA 570

PRK07764

DNA polymerase III subunits gamma and tau; Validated

525-928

7.59e-13

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 73.10 E-value: 7.59e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   525 GEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAE 604
Cdd:PRK07764  389 GGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAP 468

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   605 AKSPAEAKSPAEAKSPAEAKSPAEAksPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSP----AEV--- 677
Cdd:PRK07764  469 APAAAPEPTAAPAPAPPAAPAPAAA--PAAPAAPAAPAGADDAATLRERWPEILAAVPKRSRKTWAILLPeatvLGVrgd 546

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   678 ------KSPGEAKSPAEPKSPA------EAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKS 745
Cdd:PRK07764  547 tlvlgfSTGGLARRFASPGNAEvlvtalAEELGGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAA 626

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   746 PGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPE 825
Cdd:PRK07764  627 PAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   826 KAKPldvkSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKVEE 905
Cdd:PRK07764  707 ATPP----AGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782

                         410       420
                  ....*....|....*....|...
gi 94730399   906 EKTLPtpktEAKESKKDEAPKEA 928
Cdd:PRK07764  783 EEMAE----DDAPSMDDEDRRDA 801

PRK12323

DNA polymerase III subunit gamma/tau;

531-747

8.69e-13

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 72.60 E-value: 8.69e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   531 GEAKSPAEAKSPGEAKSPgeAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPAtvkspGEAKSPSEAKSPAEAKSPAE 610
Cdd:PRK12323  370 GGAGPATAAAAPVAQPAP--AAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAA-----PARRSPAPEALAAARQASAR 442

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   611 AKSPAEAKSPAEAKSPAEAKSPAEAKSPAtvkSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPK 690
Cdd:PRK12323  443 GPGGAPAPAPAPAAAPAAAARPAAAGPRP---VAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPA 519

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 94730399   691 SPAEAKSPaevkSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPG 747
Cdd:PRK12323  520 GWVAESIP----DPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASG 572

PRK07764

DNA polymerase III subunits gamma and tau; Validated

521-855

1.01e-12

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 72.71 E-value: 1.01e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   521 AKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAK 600
Cdd:PRK07764  391 AGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAP 470

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   601 SPAEAKSPAEAKSPAEAKSP-AEAKSPAEAKSPAEAKSPATVK------------------------------------- 642
Cdd:PRK07764  471 AAAPEPTAAPAPAPPAAPAPaAAPAAPAAPAAPAGADDAATLRerwpeilaavpkrsrktwaillpeatvlgvrgdtlvl 550

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   643 ---SPGEAKS------------------------------PSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEP 689
Cdd:PRK07764  551 gfsTGGLARRfaspgnaevlvtalaeelggdwqveavvgpAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPA 630

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   690 KSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKS 769
Cdd:PRK07764  631 GAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPP 710

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   770 PEKAKTPVKEGAKSPAEAKSPEKAKSPvkeDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLD-VKSPEAQTPVQEEAKHP 848
Cdd:PRK07764  711 AGQADDPAAQPPQAAQGASAPSPAADD---PVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAApAAAPPPSPPSEEEEMAE 787


                  ....*..
gi 94730399   849 TDIRPPE 855
Cdd:PRK07764  788 DDAPSMD 794

PHA03307

transcriptional regulator ICP4; Provisional

501-795

1.52e-12

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 72.13 E-value: 1.52e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   501 PPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPgeAKSPGEAKSPAepkspaePKSPAEAKSPAE 580
Cdd:PHA03307  118 PPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASD--AASSRQAALPL-------SSPEETARAPSS 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   581 PKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAeakspaeAKSPAEAKSPATVKSPGEAKSPsEAKSPAEAK 660
Cdd:PHA03307  189 PPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAA-------DDAGASSSDSSSSESSGCGWGP-ENECPLPRP 260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   661 SPAEAKSPAEAKSPAEVKSPGeaKSPAEPKSPAEAKSPaevkSPAEAKSPAEVKSPGEAKSPAAVKSP-AEAKSPAAVKS 739
Cdd:PHA03307  261 APITLPTRIWEASGWNGPSSR--PGPASSSSSPRERSP----SPSPSSPGSGPAPSSPRASSSSSSSReSSSSSTSSSSE 334

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 94730399   740 PGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKS 795
Cdd:PHA03307  335 SSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRA 390

PHA03247

large tegument protein UL36; Provisional

569-944

2.67e-12

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 71.51 E-value: 2.67e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   569 PKSPAEAKSPAEPKSpatVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAK 648
Cdd:PHA03247 2553 PPLPPAAPPAAPDRS---VPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPP 2629

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   649 SPSEAKSPAEAKSPAEA---KSPAEAKSPAEVKSPGEAKSPAEPkspAEAKSPAEVKSPAEAksPAEVKSPGEAKSPAAV 725
Cdd:PHA03247 2630 SPSPAANEPDPHPPPTVpppERPRDDPAPGRVSRPRRARRLGRA---AQASSPPQRPRRRAA--RPTVGSLTSLADPPPP 2704

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   726 KSPAEAKSPAAVksPGEAKSPGEAksPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAK-SPAEAKSPEKAKSPVKEDIKPP 804
Cdd:PHA03247 2705 PPTPEPAPHALV--SATPLPPGPA--AARQASPALPAAPAPPAVPAGPATPGGPARPaRPPTTAGPPAPAPPAAPAAGPP 2780

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   805 AEAKSPEKAK-SPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKK 883
Cdd:PHA03247 2781 RRLTRPAVASlSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGG 2860

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 94730399   884 EEVKSPVKEEVKAKEPPKKVEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKETPTEKP 944
Cdd:PHA03247 2861 DVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQP 2921

SMC_prok_B

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...

112-407

4.97e-12

Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 4.97e-12

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    112 KVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVREMRGAVLRLGAARGQLRLEQEHLLEDIAHVRQRLDEEARQRE 191
Cdd:TIGR02168  685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    192 EAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGEL-LGQIQGCGAAQAQAQAEARDALKCDVTSALR 270
Cdd:TIGR02168  765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtLLNEEAANLRERLESLERRIAATERRLEDLE 844

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    271 EIRAQLEGHAVQSTLQSEEwFRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEALKSTKESLERQRSELEDR 350
Cdd:TIGR02168  845 EQIEELSEDIESLAAEIEE-LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 94730399    351 hqadIASYQDAIQQLDSELRNTKwemaAQLRE-YQDLLNVKMALDIEIAAYRKLLEGE 407
Cdd:TIGR02168  924 ----LAQLELRLEGLEVRIDNLQ----ERLSEeYSLTLEEAEALENKIEDDEEEARRR 973

PRK12323

DNA polymerase III subunit gamma/tau;

543-758

8.33e-12

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 69.52 E-value: 8.33e-12

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   543 GEAKSPGEAKSPGEAKSPA--EPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSpseAKSPAEAKSPAEAKSPAEAKSP 620
Cdd:PRK12323  370 GGAGPATAAAAPVAQPAPAaaAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA---RRSPAPEALAAARQASARGPGG 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   621 AEAKSPAEAKSPAEAKSPATvkspgeaksPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPaeakSPAE 700
Cdd:PRK12323  447 APAPAPAPAAAPAAAARPAA---------AGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASP----APAQ 513

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 94730399   701 VKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSP 758
Cdd:PRK12323  514 PDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASAS 571

PRK12323

DNA polymerase III subunit gamma/tau;

583-790

1.10e-11

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 69.13 E-value: 1.10e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   583 SPATVKSPGEAKSPSEAKSPAEAkspAEAKSPAEAKSPAEAKSPAEAKSPAEA---KSPATVKSPGEAKSPSEAKSPAEA 659
Cdd:PRK12323  373 GPATAAAAPVAQPAPAAAAPAAA---APAPAAPPAAPAAAPAAAAAARAVAAAparRSPAPEALAAARQASARGPGGAPA 449

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   660 KSPAEAKSPAEAKSPAevkspgeAKSPAEPksPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKS 739
Cdd:PRK12323  450 PAPAPAAAPAAAARPA-------AAGPRPV--AAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAG 520

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 94730399   740 PGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSP 790
Cdd:PRK12323  521 WVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASAS 571

PRK07003

DNA polymerase III subunit gamma/tau;

501-711

1.19e-11

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 69.11 E-value: 1.19e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   501 PPAEEAASPEKETKSRVKEEAKSPgeAKSPGEAKSPAEAKSPGEAKSPGEAKSPgeaksPAEPKSPAEPKSPAEAKSPAE 580
Cdd:PRK07003  419 AATRAEAPPAAPAPPATADRGDDA--ADGDAPVPAKANARASADSRCDERDAQP-----PADSGSASAPASDAPPDAAFE 491

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   581 PKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAT----VKSPGEAKSPSEAKSP 656
Cdd:PRK07003  492 PAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAaldvLRNAGMRVSSDRGARA 571

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 94730399   657 AEAKSPAEAKSPAEAKSPAEVKSPgeAKSPAEPKSPAEAKSPAEVKSPAEAKSPA 711
Cdd:PRK07003  572 AAAAKPAAAPAAAPKPAAPRVAVQ--VPTPRARAATGDAPPNGAARAEQAAESRG 624

PHA03307

transcriptional regulator ICP4; Provisional

526-868

1.38e-11

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 69.04 E-value: 1.38e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   526 EAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAepkSPAEAKSPAEPKSPATVKSPGeakSPSEAKSPAEA 605
Cdd:PHA03307   12 EAAAEGGEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAV---TVVAGAAACDRFEPPTGPPPG---PGTEAPANESR 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   606 KSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKS 685
Cdd:PHA03307   86 STPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASD 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   686 PAEPKSPAEAKSPAEvkSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPG-EAKSPAEAKSPAEAKS- 763
Cdd:PHA03307  166 AASSRQAALPLSSPE--ETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGrSAADDAGASSSDSSSSe 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   764 ------------PIEVKSPEKAKTPVKEGA--------KSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKP 823
Cdd:PHA03307  244 ssgcgwgpenecPLPRPAPITLPTRIWEASgwngpssrPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRE 323

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 94730399   824 PEKAKPLDVKSPEAQTPV---QEEAKHPTDIRPPEQVKSPAKEKAKSP 868
Cdd:PHA03307  324 SSSSSTSSSSESSRGAAVspgPSPSRSPSPSRPPPPADPSSPRKRPRP 371

PRK07003

DNA polymerase III subunit gamma/tau;

500-729

1.93e-11

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 68.34 E-value: 1.93e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   500 SPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPA 579
Cdd:PRK07003  396 VPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSG 475

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   580 EPKSPAtvkSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEA 659
Cdd:PRK07003  476 SASAPA---SDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAA 552

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   660 ----------KSPAEAKSPAEAKSPAevkspgeAKSPAEPKsPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPA 729
Cdd:PRK07003  553 ldvlrnagmrVSSDRGARAAAAAKPA-------AAPAAAPK-PAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRG 624

PRK07003

DNA polymerase III subunit gamma/tau;

521-759

3.44e-11

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 67.57 E-value: 3.44e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   521 AKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAepKSPATVKSPGEAKSPSEAK 600
Cdd:PRK07003  385 ARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAA--DGDAPVPAKANARASADSR 462

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   601 SPAEAKSPAEAKSP-AEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAK---------SPAEAKSPAEaksPAE 670
Cdd:PRK07003  463 CDERDAQPPADSGSaSAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASredapaaaaPPAPEARPPT---PAA 539

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   671 AKSPAevKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAevKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAK 750
Cdd:PRK07003  540 AAPAA--RAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPA--AAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAAR 615


                  ....*....
gi 94730399   751 SPAEAKSPA 759
Cdd:PRK07003  616 AEQAAESRG 624

PRK12323

DNA polymerase III subunit gamma/tau;

604-844

7.83e-11

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 66.44 E-value: 7.83e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   604 EAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAeAKSPAEAKSPAEAKSPAEVKSPGEA 683
Cdd:PRK12323  371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA-RRSPAPEALAAARQASARGPGGAPA 449

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   684 KSPAEPKSPAEAKSPAevkSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKS 763
Cdd:PRK12323  450 PAPAPAAAPAAAARPA---AAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESI 526

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   764 PIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVkedikPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQE 843
Cdd:PRK12323  527 PDPATADPDDAFETLAPAPAAAPAPRAAAATEPV-----VAPRPPRASASGLPDMFDGDWPALAARLPVRGLAQQLARQS 601


                  .
gi 94730399   844 E 844
Cdd:PRK12323  602 E 602

PRK12323

DNA polymerase III subunit gamma/tau;

499-699

1.63e-10

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 65.28 E-value: 1.63e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   499 TSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAK-SPGEAKSPAEPKSPAEPKSPAEAKS 577
Cdd:PRK12323  372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARrSPAPEALAAARQASARGPGGAPAPA 451

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   578 PAEPKSPATVKSPGEAKS---PSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAK 654
Cdd:PRK12323  452 PAPAAAPAAAARPAAAGPrpvAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPAT 531

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 94730399   655 SPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPA 699
Cdd:PRK12323  532 ADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDM 576

PRK07764

DNA polymerase III subunits gamma and tau; Validated

539-755

2.37e-10

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 65.01 E-value: 2.37e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   539 AKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAksPAEAKSPAEAK 618
Cdd:PRK07764  594 AAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVP--DASDGGDGWPA 671

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   619 SPAEAKSPAEAKSPAEAKSPAtvKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSP 698
Cdd:PRK07764  672 KAGGAAPAAPPPAPAPAAPAA--PAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPP 749

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 94730399   699 AEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAksPAAVKSPGEAKSPGEAKSPAEA 755
Cdd:PRK07764  750 DPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE--EEMAEDDAPSMDDEDRRDAEEV 804

PRK07764

DNA polymerase III subunits gamma and tau; Validated

500-817

4.65e-10

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 63.85 E-value: 4.65e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   500 SPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSP-AEPKSPAEPKSPAEAKSP 578
Cdd:PRK07764  424 APAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPpAAPAPAAAPAAPAAPAAP 503

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   579 AEPKSPATVK----------------------------------------SPGEAKSPSEAKSPA------------EAK 606
Cdd:PRK07764  504 AGADDAATLRerwpeilaavpkrsrktwaillpeatvlgvrgdtlvlgfsTGGLARRFASPGNAEvlvtalaeelggDWQ 583

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   607 SPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSP 686
Cdd:PRK07764  584 VEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDAS 663

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   687 AEPK-SPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPI 765
Cdd:PRK07764  664 DGGDgWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPP 743

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 94730399   766 EVKSPEKAKTPVKEGAksPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPV 817
Cdd:PRK07764  744 EPDDPPDPAGAPAQPP--PPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSM 793

PRK07003

DNA polymerase III subunit gamma/tau;

609-868

4.78e-10

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 63.72 E-value: 4.78e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   609 AEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKsPGEAKSPSEA--KSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSP 686
Cdd:PRK07003  372 VPARVAGAVPAPGARAAAAVGASAVPAVTAVTGA-AGAALAPKAAaaAAATRAEAPPAAPAPPATADRGDDAADGDAPVP 450

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   687 AEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAeakSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPie 766
Cdd:PRK07003  451 AKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPA---PRAAAPSAATPAAVPDARAPAAASREDAPAAA-- 525

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   767 vKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLdVKSPEAQTPVQEEAK 846
Cdd:PRK07003  526 -APPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPA-APRVAVQVPTPRARA 603

                         250       260
                  ....*....|....*....|..
gi 94730399   847 HPTDIRPPEQVKSPAKEKAKSP 868
Cdd:PRK07003  604 ATGDAPPNGAARAEQAAESRGA 625

Smc

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...

98-387

8.70e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 8.70e-10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   98 QLQALNDRFAGyiDKVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVREMRGAVLRLGAARGQLRLEQEHLLEDIA 177
Cdd:COG1196  228 ELLLLKLRELE--AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  178 HVRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLGQIQGCGAAQAQAQAEA 257
Cdd:COG1196  306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  258 RDALkcDVTSALREIRAQLEghAVQSTLQSEEwfrVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEALKSTK 337
Cdd:COG1196  386 EELL--EALRAAAELAAQLE--ELEEAEEALL---ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 94730399  338 ESLERQRSELEDRHQADIASYQDAIQQLDsELRNTKWEMAAQLREYQDLL 387
Cdd:COG1196  459 EALLELLAELLEEAALLEAALAELLEELA-EAAARLLLLLEAEADYEGFL 507

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

555-676

1.23e-09

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 62.42 E-value: 1.23e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   555 GEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPA-EAKSPAEAKSPAEAKSPA 633
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAaAAPAAAPAAAPAAVALAP 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 94730399   634 EAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAE 676
Cdd:PRK14951  450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492

PspC_subgroup_1

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...

594-932

2.07e-09

Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 61.57 E-value: 2.07e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   594 KSPSEAKSPAEAKSPAEAkspAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAE---AKSPAE 670
Cdd:NF033838  108 KEKSEAELTSKTKKELDA---AFEQFKKDTLEPGKKVAEATKKVEEAEKKAKDQKEEDRRNYPTNTYKTLEleiAESDVE 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   671 AKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSpAEAKSPAEVKSPGEaKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAK 750
Cdd:NF033838  185 VKKAELELVKEEAKEPRDEEKIKQAKAKVESKK-AEATRLEKIKTDRE-KAEEEAKRRADAKLKEAVEKNVATSEQDKPK 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   751 SPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAkspVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPL 830
Cdd:NF033838  263 RRAKRGVLGEPATPDKKENDAKSSDSSVGEETLPSPSLKPEKK---VAEAEKKVEEAKKKAKDQKEEDRRNYPTNTYKTL 339

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   831 -------DVKSPEAQTP-VQEEAKHPTDIRPPEQVKSPAK-EKAKSPEKEEAKTSEKVApkKEEVKSPVKEEVKAKEPPk 901
Cdd:NF033838  340 eleiaesDVKVKEAELElVKEEAKEPRNEEKIKQAKAKVEsKKAEATRLEKIKTDRKKA--EEEAKRKAAEEDKVKEKP- 416

                         330       340       350
                  ....*....|....*....|....*....|.
gi 94730399   902 kVEEEKTLPTPKTEaKESKKDEAPKEAPKPK 932
Cdd:NF033838  417 -AEQPQPAPAPQPE-KPAPKPEKPAEQPKAE 445

PRK12323

DNA polymerase III subunit gamma/tau;

520-729

2.35e-09

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 61.43 E-value: 2.35e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   520 EAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSE- 598
Cdd:PRK12323  371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAp 450

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   599 AKSPAEAKSPAEAKSPAEAKSPaeaksPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVK 678
Cdd:PRK12323  451 APAPAAAPAAAARPAAAGPRPV-----AAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAES 525

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 94730399   679 SPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPA 729
Cdd:PRK12323  526 IPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDM 576

PRK12323

DNA polymerase III subunit gamma/tau;

645-829

3.73e-09

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 60.66 E-value: 3.73e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   645 GEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGE-----A 719
Cdd:PRK12323  370 GGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGpggapA 449

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   720 KSPAAVKSPAEAKSPAAVKS---PGEAKSPGEAKSPAEAKSPA-EAKSPIEVKSPEKAKTPVKEGAKSPAEAKSpEKAKS 795
Cdd:PRK12323  450 PAPAPAAAPAAAARPAAAGPrpvAAAAAAAPARAAPAAAPAPAdDDPPPWEELPPEFASPAPAQPDAAPAGWVA-ESIPD 528

                         170       180       190
                  ....*....|....*....|....*....|....
gi 94730399   796 PVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKP 829
Cdd:PRK12323  529 PATADPDDAFETLAPAPAAAPAPRAAAATEPVVA 562

PRK07735

NADH-quinone oxidoreductase subunit C;

562-829

4.51e-09

NADH-quinone oxidoreductase subunit C;

Pssm-ID: 236081 [Multi-domain] Cd Length: 430 Bit Score: 59.99 E-value: 4.51e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   562 EPKSPAEPKSPAEAKSPAEPKSPATVKSPGE-AKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAT 640
Cdd:PRK07735    3 PEKDLEDLKKEAARRAKEEARKRLVAKHGAEiSKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKAKAAALAKQKREGT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   641 VKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAK 720
Cdd:PRK07735   83 EEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDK 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   721 SPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKED 800
Cdd:PRK07735  163 EKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIAA 242

                         250       260
                  ....*....|....*....|....*....
gi 94730399   801 IKPPAEAKSPEKAKSPVKEGAKPPEKAKP 829
Cdd:PRK07735  243 AKAKAAAAARAKTKGAEGKKEEEPKQEEP 271

PLN03237

DNA topoisomerase 2; Provisional

532-827

7.38e-09

DNA topoisomerase 2; Provisional

Pssm-ID: 215641 [Multi-domain] Cd Length: 1465 Bit Score: 60.26 E-value: 7.38e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   532 EAKSPAEAKSPGEAKSPGEAKSPGEAKSPAePKSPAePKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPaeakspaEA 611
Cdd:PLN03237 1172 DAKAEEAREKLQRAAARGESGAAKKVSRQA-PKKPA-PKKTTKKASESETTEETYGSSAMETENVAEVVKP-------KG 1242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   612 KSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSeAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKS 691
Cdd:PLN03237 1243 RAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSAPAQS-AKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFA 1321

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   692 PAEAKSPAEVK----SPAEAKSPAevkspgeAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAK-SPAEAKSPAEAKSPIE 766
Cdd:PLN03237 1322 VEVSLAERLKKkggrKPAAANKKA-------AKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIgISPEKKVRKMRASPFN 1394

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 94730399   767 VKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKA 827
Cdd:PLN03237 1395 KKSGSVLGRAATNKETESSENVSGSSSSEKDEIDVSAKPRPQRANRKQTTYVLSDSESESA 1455

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

615-740

7.61e-09

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 59.73 E-value: 7.61e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   615 AEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVkspgeAKSPAEPKSPAE 694
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAA-----APAAAPAAAPAA 444

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 94730399   695 AkSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSP 740
Cdd:PRK14951  445 V-ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLT 489

PRK07764

DNA polymerase III subunits gamma and tau; Validated

585-807

7.93e-09

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 60.00 E-value: 7.93e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   585 ATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAE 664
Cdd:PRK07764  586 AVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDG 665

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   665 AK-SPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEA 743
Cdd:PRK07764  666 GDgWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEP 745

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 94730399   744 KSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAkspekAKSPVKEDIKPPAEA 807
Cdd:PRK07764  746 DDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDD-----APSMDDEDRRDAEEV 804

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

609-729

9.51e-09

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 59.34 E-value: 9.51e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   609 AEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAE 688
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 94730399   689 PKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPA 729
Cdd:PRK14951  450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

563-689

1.28e-08

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 58.96 E-value: 1.28e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   563 PKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKS-PAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATV 641
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAaSAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 94730399   642 KSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEP 689
Cdd:PRK14951  446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493

PLN03237

DNA topoisomerase 2; Provisional

503-729

1.42e-08

DNA topoisomerase 2; Provisional

Pssm-ID: 215641 [Multi-domain] Cd Length: 1465 Bit Score: 59.11 E-value: 1.42e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   503 AEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPgEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEA----KSP 578
Cdd:PLN03237 1201 APKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKP-KGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAynldSAP 1279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   579 AEP-KSPATVKSPGEAKSPSEAKSPAEAKSPAEAK----------SPAEAKSPAEAKSPAEAKSPAeAKSPATVKSPGEA 647
Cdd:PLN03237 1280 AQSaKMEETVKAVPARRAAARKKPLASVSVISDSDdddddfavevSLAERLKKKGGRKPAAANKKA-AKPPAAAKKRGPA 1358

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   648 KSPSEAKSPAEAKSPAEAKSPAEAKSPAEV-KSPGEAKSPAEPKSPAEAKSP--AEVKSPAEAKSPAEVKSPGEAKSPAA 724
Cdd:PLN03237 1359 TVQSGQKLLTEMLKPAEAIGISPEKKVRKMrASPFNKKSGSVLGRAATNKETesSENVSGSSSSEKDEIDVSAKPRPQRA 1438


                  ....*
gi 94730399   725 VKSPA 729
Cdd:PLN03237 1439 NRKQT 1443

PRK07764

DNA polymerase III subunits gamma and tau; Validated

573-787

1.71e-08

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 58.84 E-value: 1.71e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   573 AEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSE 652
Cdd:PRK07764  586 AVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDG 665

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   653 AK-SPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEA 731
Cdd:PRK07764  666 GDgWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEP 745

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 94730399   732 KS---PAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEA 787
Cdd:PRK07764  746 DDppdPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEV 804

PRK07003

DNA polymerase III subunit gamma/tau;

499-669

2.57e-08

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 58.32 E-value: 2.57e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   499 TSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSP-------AEPKSPAEPKS 571
Cdd:PRK07003  421 TRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASdappdaaFEPAPRAAAPS 500

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   572 PAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEA--------------------------KSPAEAKS 625
Cdd:PRK07003  501 AATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAggaaaaldvlrnagmrvssdrgaraaAAAKPAAA 580

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 94730399   626 PAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPA 669
Cdd:PRK07003  581 PAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRG 624

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

645-764

3.47e-08

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 57.42 E-value: 3.47e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   645 GEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAA 724
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 94730399   725 VKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSP 764
Cdd:PRK14951  450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLT 489

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

569-700

3.62e-08

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 57.42 E-value: 3.62e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   569 PKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATvkspgEAK 648
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAA-----PAA 440

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 94730399   649 SPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAE 700
Cdd:PRK14951  441 APAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

598-716

4.22e-08

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 57.42 E-value: 4.22e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   598 EAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKS-PATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAkSPAE 676
Cdd:PRK14951  371 EAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAaSAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV-ALAP 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 94730399   677 VKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSP 716
Cdd:PRK14951  450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLT 489

PHA03307

transcriptional regulator ICP4; Provisional

499-735

4.34e-08

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 57.49 E-value: 4.34e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   499 TSPPAEEAASPEKETKSRVKEEAKSPGeAKSPGEAKSPAEAKSPGEAKSPG-EAKSPGEAKSPAEPKSPAEPKSPAEAKS 577
Cdd:PHA03307  195 PSTPPAAASPRPPRRSSPISASASSPA-PAPGRSAADDAGASSSDSSSSESsGCGWGPENECPLPRPAPITLPTRIWEAS 273

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   578 PAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAkSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPa 657
Cdd:PHA03307  274 GWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSS-SSRESSSSSTSSSSESSRGAAVSPGPSPSRSP- 351

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 94730399   658 eakSPAEAKSPAEAKSPAEvKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPA 735
Cdd:PHA03307  352 ---SPSRPPPPADPSSPRK-RPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGA 425

PHA03307

transcriptional regulator ICP4; Provisional

500-759

5.69e-08

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 57.10 E-value: 5.69e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   500 SPPAEEAASPEketksrvkEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPA 579
Cdd:PHA03307  170 RQAALPLSSPE--------ETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSS 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   580 EPKSPATVKSPGEAKSPseakSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATvkSPGEAKSPSeAKSPAEA 659
Cdd:PHA03307  242 SESSGCGWGPENECPLP----RPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSP--SPSSPGSGP-APSSPRA 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   660 KSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEvKSPGEAKSPAAVKSPAEAKSPAAVKS 739
Cdd:PHA03307  315 SSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRK-RPRPSRAPSSPAASAGRPTRRRARAA 393

                         250       260
                  ....*....|....*....|
gi 94730399   740 PGEAKSPGEAKSPAEAKSPA 759
Cdd:PHA03307  394 VAGRARRRDATGRFPAGRPR 413

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

581-712

6.10e-08

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 56.65 E-value: 6.10e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   581 PKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPgeaksPSEAKSPAEAK 660
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAP-----AAAAPAAAPAA 440

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 94730399   661 SPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAE 712
Cdd:PRK14951  441 APAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

603-723

6.48e-08

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 56.65 E-value: 6.48e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   603 AEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKS-PGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPG 681
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAaSAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 94730399   682 EAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPA 723
Cdd:PRK14951  450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491

PRK07735

NADH-quinone oxidoreductase subunit C;

500-770

8.25e-08

NADH-quinone oxidoreductase subunit C;

Pssm-ID: 236081 [Multi-domain] Cd Length: 430 Bit Score: 56.14 E-value: 8.25e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   500 SPPAEEAASPEKETKSRVKEEAKSPGEAKSPGE-AKSPAEAKSPGEAKSPGEAKSPGEAK----SPAEPKSPAEPKSPAE 574
Cdd:PRK07735    1 MDPEKDLEDLKKEAARRAKEEARKRLVAKHGAEiSKLEEENREKEKALPKNDDMTIEEAKrraaAAAKAKAAALAKQKRE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   575 AKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAK 654
Cdd:PRK07735   81 GTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEET 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   655 SPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSP 734
Cdd:PRK07735  161 DKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAI 240

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 94730399   735 AAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSP 770
Cdd:PRK07735  241 AAAKAKAAAAARAKTKGAEGKKEEEPKQEEPSVNQP 276

PRK05901

RNA polymerase sigma factor; Provisional

858-1070

1.43e-07

RNA polymerase sigma factor; Provisional

Pssm-ID: 235640 [Multi-domain] Cd Length: 509 Bit Score: 55.39 E-value: 1.43e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   858 KSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKVEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKK 937
Cdd:PRK05901    2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   938 ETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKLGVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAA 1017
Cdd:PRK05901   82 AAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDD 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 94730399  1018 PEKKDTKEEKTTEsrkPEEKPKMEAKVKEDDKSLSKEPSKPKTEKAEKSSSTD 1070
Cdd:PRK05901  162 DDDVDDEDEEKKE---AKELEKLSDDDDFVWDEDDSEALRQARKDAKLTATAD 211

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

627-749

2.02e-07

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 55.11 E-value: 2.02e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   627 AEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPA-EPKSPAEAKSPAEVKSPA 705
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAaAAPAAAPAAAPAAVALAP 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 94730399   706 EAKSPAE---VKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEA 749
Cdd:PRK14951  450 APPAQAApetVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

537-664

2.32e-07

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 55.11 E-value: 2.32e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   537 AEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPseaksPAEAKSPAEAKSPAE 616
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAP-----AAAAPAAAPAAAPAA 444

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 94730399   617 AKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAE 664
Cdd:PRK14951  445 VALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492

2A1904

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...

687-944

2.33e-07

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]

Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 55.39 E-value: 2.33e-07

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    687 AEPKSPAEaKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVksPGEAKSPGEAKSPAEAKSpAEAKSPIE 766
Cdd:TIGR00927  636 AEAEHTGE-RTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEI--PAERKGEQEGEGEIEAKE-ADHKGETE 711

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    767 VKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDiKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAK 846
Cdd:TIGR00927  712 AEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEG-EGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGE 790

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    847 HPTD-----IRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKVEEEKTLPTPKTEAKESKK 921
Cdd:TIGR00927  791 MKGDegaegKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEE 870

                          250       260
                   ....*....|....*....|...
gi 94730399    922 DEAPKEAPKPKVEEKKETPTEKP 944
Cdd:TIGR00927  871 EEEEEEEEEEEEEEEEEEENEEP 893

PRK07003

DNA polymerase III subunit gamma/tau;

645-827

2.69e-07

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 54.86 E-value: 2.69e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   645 GEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAA 724
Cdd:PRK07003  365 GGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAAD 444

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   725 VKSPAE--AKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPE-KAKTPVKEGAKSPAEAKSPEKAKSPvkeDI 801
Cdd:PRK07003  445 GDAPVPakANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPApRAAAPSAATPAAVPDARAPAAASRE---DA 521

                         170       180
                  ....*....|....*....|....*.
gi 94730399   802 KPPAEAKSPEkAKSPVKEGAKPPEKA 827
Cdd:PRK07003  522 PAAAAPPAPE-ARPPTPAAAAPAARA 546

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

525-647

2.70e-07

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 54.72 E-value: 2.70e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   525 GEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAE 604
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 94730399   605 AKSPAEAKS----PAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEA 647
Cdd:PRK14951  450 APPAQAAPEtvaiPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496

PTZ00108

DNA topoisomerase 2-like protein; Provisional

855-1090

2.84e-07

DNA topoisomerase 2-like protein; Provisional

Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 55.05 E-value: 2.84e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   855 EQVKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKVEEEKTLPTPKTEAKESKKDEAPK--EAPKPK 932
Cdd:PTZ00108 1148 EEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNssGSDQED 1227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   933 VEEKKETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKLGVKEEAKPKEKTETTKTEAEDTKAKEPSKPteTEKPKKE 1012
Cdd:PTZ00108 1228 DEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNG--GSKPSSP 1305

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  1013 EMPAAPEKKDTKEEKTTESRKPEEKPKMEAKVKEDDKSLSKEPS---KPKTEKAEKSSSTDQKESQPPEKTTEDKATKGE 1089
Cdd:PTZ00108 1306 TKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSsrlLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDE 1385


                  .
gi 94730399  1090 K 1090
Cdd:PTZ00108 1386 D 1386

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

675-791

3.07e-07

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 54.34 E-value: 3.07e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   675 AEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAE 754
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 94730399   755 AKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPE 791
Cdd:PRK14951  450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAA 486

PRK12323

DNA polymerase III subunit gamma/tau;

667-875

3.38e-07

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 54.50 E-value: 3.38e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   667 SPAEAKSpAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAevksPGEAKSPAAvKSPAEAKSPAAVKSPGEAKSP 746
Cdd:PRK12323  373 GPATAAA-APVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAA----RAVAAAPAR-RSPAPEALAAARQASARGPGG 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   747 GEAKSPAEAKSPAEAKSPievksPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEK 826
Cdd:PRK12323  447 APAPAPAPAAAPAAAARP-----AAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGW 521

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 94730399   827 AKPLDVKSPEAQTPVQEEAkhptdiRPPEQVKSPAKEKAKSPEKEEAKT 875
Cdd:PRK12323  522 VAESIPDPATADPDDAFET------LAPAPAAAPAPRAAAATEPVVAPR 564

PRK07003

DNA polymerase III subunit gamma/tau;

680-940

3.65e-07

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 54.47 E-value: 3.65e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   680 PGEAKSPAEPKS--PAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKS 757
Cdd:PRK07003  368 PGGGVPARVAGAvpAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDA 447

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   758 PAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSP-EKAKSPVKEDIKPPAEAKSPekAKSPVKEGAKPPEKAKPLDVKSPE 836
Cdd:PRK07003  448 PVPAKANARASADSRCDERDAQPPADSGSASAPaSDAPPDAAFEPAPRAAAPSA--ATPAAVPDARAPAAASREDAPAAA 525

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   837 AQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKVEEEktLPTPKTEA 916
Cdd:PRK07003  526 APPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQ--VPTPRARA 603

                         250       260
                  ....*....|....*....|....
gi 94730399   917 KESKKDEAPKeAPKPKVEEKKETP 940
Cdd:PRK07003  604 ATGDAPPNGA-ARAEQAAESRGAP 626

PHA03378

EBNA-3B; Provisional

563-876

4.04e-07

EBNA-3B; Provisional

Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 54.30 E-value: 4.04e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   563 PKSPAEPKSPAEAKSPAEPKSPATVkspGEAKSPSEAKSPAEAKSPAEAksPAEAKSPAEAKSPAEAKSPAEAKSPATVK 642
Cdd:PHA03378  655 PQVEITPYKPTWTQIGHIPYQPSPT---GANTMLPIQWAPGTMQPPPRA--PTPMRPPAAPPGRAQRPAAATGRARPPAA 729

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   643 SPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAkSPAEVKSPAEAKSPAEVKSPGEAKSP 722
Cdd:PHA03378  730 APGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQA-PPAPQQRPRGAPTPQPPPQAGPTSMQ 808

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   723 AAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPekaktpvkegakSPAEAKSPEKAKSPVkedIK 802
Cdd:PHA03378  809 LMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALERQAAAGPTP------------SPGSGTSDKIVQAPV---FY 873

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 94730399   803 PPAEAKS--PEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVqeeakHPTDIRPPEQVKSPAKEKAKSPEKEEAKTS 876
Cdd:PHA03378  874 PPVLQPIqvMRQLGSVRAAAASTVTQAPTEYTGERRGVGPM-----HPTDIPPSKRAKTDAYVESQPPHGGQSHSF 944

PLN03237

DNA topoisomerase 2; Provisional

657-897

5.25e-07

DNA topoisomerase 2; Provisional

Pssm-ID: 215641 [Multi-domain] Cd Length: 1465 Bit Score: 54.10 E-value: 5.25e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   657 AEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAvKSPAEAKSPAA 736
Cdd:PLN03237 1175 AEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKG-RAGAKKKAPAA 1253

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   737 VKSPGEAKSPGEAKSPAEA---KSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSP-----VKEDIKPPAEAK 808
Cdd:PLN03237 1254 AKEKEEEDEILDLKDRLAAynlDSAPAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDdddfaVEVSLAERLKKK 1333

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   809 SPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAKHPTD---IRPPEQV----KSPAKEKAKSP-----EKEEAKTS 876
Cdd:PLN03237 1334 GGRKPAAANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEaigISPEKKVrkmrASPFNKKSGSVlgraaTNKETESS 1413

                         250       260
                  ....*....|....*....|.
gi 94730399   877 EKVAPKKEEVKSPVKEEVKAK 897
Cdd:PLN03237 1414 ENVSGSSSSEKDEIDVSAKPR 1434

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

531-658

5.79e-07

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 53.56 E-value: 5.79e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   531 GEAKSPAEAKSPGEAKSPGEAKSPgeaksPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAE 610
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAP-----VAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAA 444

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 94730399   611 AKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAE 658
Cdd:PRK14951  445 VALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

689-810

6.70e-07

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 53.56 E-value: 6.70e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   689 PKSPAEAKSPAEVKSPAEAKSPAEVKSP-GEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEV 767
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARPEAAAPAAAPvAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 94730399   768 KSPEKAKTPVKEGAKSPAEAKSPEKAkSPVKEDIKPPAEAKSP 810
Cdd:PRK14951  446 ALAPAPPAQAAPETVAIPVRVAPEPA-VASAAPAPAAAPAAAR 487

PRK07994

DNA polymerase III subunits gamma and tau; Validated

569-730

8.56e-07

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 52.95 E-value: 8.56e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   569 PKSP-AEAKSPAEPKSPAtvksPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEA 647
Cdd:PRK07994  361 PAAPlPEPEVPPQSAAPA----ASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGAT 436

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   648 KSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPkSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKS 727
Cdd:PRK07994  437 KAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEA-YRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAK 515


                  ...
gi 94730399   728 PAE 730
Cdd:PRK07994  516 LAA 518

PspC_subgroup_1

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...

579-872

8.69e-07

Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 53.09 E-value: 8.69e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   579 AEPKSPATVKSPGEAKSPSEAKSpAEAKSPAEAKSPAEaKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAE 658
Cdd:NF033838  195 EEAKEPRDEEKIKQAKAKVESKK-AEATRLEKIKTDRE-KAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKRGVLGE 272

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   659 AKSPAeaKSPAEAKSPAEvkSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAE---AKSPA 735
Cdd:NF033838  273 PATPD--KKENDAKSSDS--SVGEETLPSPSLKPEKKVAEAEKKVEEAKKKAKDQKEEDRRNYPTNTYKTLEleiAESDV 348

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   736 AVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSP-----EKAKTPVKegaKSPAEAKSPEKAKSPVKEDikpPAEAKSP 810
Cdd:NF033838  349 KVKEAELELVKEEAKEPRNEEKIKQAKAKVESKKAeatrlEKIKTDRK---KAEEEAKRKAAEEDKVKEK---PAEQPQP 422

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 94730399   811 EKAKSPVKEGAKPPEKAKPLDVKSPEAQT-------PVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEE 872
Cdd:NF033838  423 APAPQPEKPAPKPEKPAEQPKAEKPADQQaeedyarRSEEEYNRLTQQQPPKTEKPAQPSTPKTGWKQE 491

PHA03307

transcriptional regulator ICP4; Provisional

499-692

1.43e-06

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 52.87 E-value: 1.43e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   499 TSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPgeakSPAEPKSPAEPK-SPAEAKS 577
Cdd:PHA03307  241 SSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSP----SPSPSSPGSGPApSSPRASS 316

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   578 PAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAkSPAEAKSPATVKSPGEAKSPSEAKSPA 657
Cdd:PHA03307  317 SSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKR-PRPSRAPSSPAASAGRPTRRRARAAVA 395

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 94730399   658 EAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSP 692
Cdd:PHA03307  396 GRARRRDATGRFPAGRPRPSPLDAGAASGAFYARY 430

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

633-761

2.04e-06

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 52.02 E-value: 2.04e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   633 AEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAE 712
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 94730399   713 VKSPGEAKSPAAVksPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEA 761
Cdd:PRK14951  450 APPAQAAPETVAI--PVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

663-777

2.18e-06

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 51.64 E-value: 2.18e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   663 AEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGE 742
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 94730399   743 AKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPV 777
Cdd:PRK14951  450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPA 484

PRK07994

DNA polymerase III subunits gamma and tau; Validated

617-779

2.36e-06

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 51.79 E-value: 2.36e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   617 AKSPAEAkSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAkSPAEAKSPAEVKSPGEAKSPAEPKSPAEAK 696
Cdd:PRK07994  358 AFHPAAP-LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPAS-APQQAPAVPLPETTSQLLAARQQLQRAQGA 435

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   697 SPAEVKSPAEAKSPAEVKSPGE---AKSPAAVKSPAEAKSPAAvkSPGEAKSPGEAKSPAEAKsPAEAKSPIE-VKSPEK 772
Cdd:PRK07994  436 TKAKKSEPAAASRARPVNSALErlaSVRPAPSALEKAPAKKEA--YRWKATNPVEVKKEPVAT-PKALKKALEhEKTPEL 512


                  ....*..
gi 94730399   773 AKTPVKE 779
Cdd:PRK07994  513 AAKLAAE 519

PspC_subgroup_1

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...

744-1068

2.40e-06

Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 51.55 E-value: 2.40e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   744 KSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKspEKAKSPVKEDIK--------------PPAEAKS 809
Cdd:NF033838  108 KEKSEAELTSKTKKELDAAFEQFKKDTLEPGKKVAEATKKVEEAE--KKAKDQKEEDRRnyptntyktleleiAESDVEV 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   810 PEKAKSPVKEGAKPPE-----KAKPLDVKSPEAQTPVQEEAKHPTDiRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKE 884
Cdd:NF033838  186 KKAELELVKEEAKEPRdeekiKQAKAKVESKKAEATRLEKIKTDRE-KAEEEAKRRADAKLKEAVEKNVATSEQDKPKRR 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   885 -------EVKSPVKEEVKAKEPPKKVEEEkTLPTP------KTEAKESKKDEAPKEAPKPKVEEKKETPTEKPK------ 945
Cdd:NF033838  265 akrgvlgEPATPDKKENDAKSSDSSVGEE-TLPSPslkpekKVAEAEKKVEEAKKKAKDQKEEDRRNYPTNTYKtlelei 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   946 ---DSTAEAKKEEAGEKKKAVASEEETPAKLGVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPA------ 1016
Cdd:NF033838  344 aesDVKVKEAELELVKEEAKEPRNEEKIKQAKAKVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEKPAeqpqpa 423

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  1017 ---APEKKDTKEEKTTESRKPEEKPKMEAKV-----KEDDKSLSKEPSKPKTEKAEKSSS 1068
Cdd:NF033838  424 papQPEKPAPKPEKPAEQPKAEKPADQQAEEdyarrSEEEYNRLTQQQPPKTEKPAQPST 483

PTZ00108

DNA topoisomerase 2-like protein; Provisional

875-1090

2.72e-06

DNA topoisomerase 2-like protein; Provisional

Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 51.97 E-value: 2.72e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   875 TSEKVAPKKEEVKSPVKE--EVKAKEPP-------KKVEE---------EKTLPTPKTEAKESKKDEAPKEAPKPKVEEK 936
Cdd:PTZ00108 1100 TKEKVEKLNAELEKKEKEleKLKNTTPKdmwledlDKFEEaleeqeeveEKEIAKEQRLKSKTKGKASKLRKPKLKKKEK 1179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   937 KETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKLGVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPA 1016
Cdd:PTZ00108 1180 KKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDE 1259

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  1017 APEKKDTKEEKTTESRKP-------EEKPKMEAKVKEDDKSLSKEPSKPKTEKAEKSSSTDQKESQPPEKTTEDKATKGE 1089
Cdd:PTZ00108 1260 FSSDDLSKEGKPKNAPKRvsavqysPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKT 1339


                  .
gi 94730399  1090 K 1090
Cdd:PTZ00108 1340 R 1340

GumC

COG3206

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];

205-399

2.92e-06

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];

Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.56 E-value: 2.92e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  205 QEAEAARVELQKKAQALQEecgYLRRHH----QEEVGELLGQIQGCGA------AQAQAQAEARDALKCDVTSALREIRA 274
Cdd:COG3206  182 EQLPELRKELEEAEAALEE---FRQKNGlvdlSEEAKLLLQQLSELESqlaearAELAEAEARLAALRAQLGSGPDALPE 258

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  275 QLEGHAVQSTLQSEEWFRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTE-LEALKSTKESLERQRSELEDRhQA 353
Cdd:COG3206  259 LLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRiLASLEAELEALQAREASLQAQ-LA 337

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 94730399  354 DIASYQDAIQQLDSELRNTKWEMAAQLREYQDLLNVKMALDIEIAA 399
Cdd:COG3206  338 QLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEAL 383

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

544-630

3.59e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 51.43 E-value: 3.59e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   544 EAKSPGEAKSPgeAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEA 623
Cdd:PRK12270   34 ADYGPGSTAAP--TAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAA 111


                  ....*..
gi 94730399   624 KSPAEAK 630
Cdd:PRK12270  112 AVEDEVT 118

tolA

cell envelope integrity inner membrane protein TolA; Provisional

502-672

3.73e-06

cell envelope integrity inner membrane protein TolA; Provisional

Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 50.58 E-value: 3.73e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   502 PAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEP 581
Cdd:PRK09510   92 LQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKA 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   582 KSPATVKSPGEAKSPSEAKspAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAtvkspgeAKSPSEAKSPAEAKS 661
Cdd:PRK09510  172 EAEAAKKAAAEAKKKAEAE--AAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAA-------AKAAAEAKAAAEKAA 242

                         170
                  ....*....|.
gi 94730399   662 PAEAKSPAEAK 672
Cdd:PRK09510  243 AAKAAEKAAAA 253

DUF5585

pfam17823

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

565-861

3.77e-06

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 50.73 E-value: 3.77e-06

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    565 SPAEPKSPAEAKSPAEPKSPATvKSPGEAKSPSEAKSPAeakSPAEAKSPAEAKSPAeAKSPAEAKSPAEAKSPATVKSP 644
Cdd:pfam17823   99 EPATREGAADGAASRALAAAAS-SSPSSAAQSLPAAIAA---LPSEAFSAPRAAACR-ANASAAPRAAIAAASAPHAASP 173

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    645 GEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVkSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAA 724
Cdd:pfam17823  174 APRTAASSTTAASSTTAASSAPTTAASSAPATL-TPARGISTAATATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPAA 252

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    725 VKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAK---SPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDI 801
Cdd:pfam17823  253 LATLAAAAGTVASAAGTINMGDPHARRLSPAKhmpSDTMARNPAAPMGAQAQGPIIQVSTDQPVHNTAGEPTPSPSNTTL 332

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 94730399    802 KPP-----------------AEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAKhPTDIRPPEQVKSPA 861
Cdd:pfam17823  333 EPNtpksvastnlavvtttkAQAKEPSASPVPVLHTSMIPEVEATSPTTQPSPLLPTQGAAG-PGILLAPEQVATEA 408

PRK07994

DNA polymerase III subunits gamma and tau; Validated

557-709

4.72e-06

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 50.63 E-value: 4.72e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   557 AKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAkSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAK 636
Cdd:PRK07994  369 EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPAS-APQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAAS 447

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 94730399   637 SPATVKSPGEA-KSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKsPAEPKSPAEAKSPAEVKSPAEAKS 709
Cdd:PRK07994  448 RARPVNSALERlASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVAT-PKALKKALEHEKTPELAAKLAAEA 520

PRK07764

DNA polymerase III subunits gamma and tau; Validated

591-940

4.85e-06

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 50.75 E-value: 4.85e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   591 GEAKSPSEAKSPAEAKSPAEAKSPAE-AKSPAEAKSPAEAKSPAEAKSPATvKSPGEAKSPSEAKSPAEAKSPAEAKSPA 669
Cdd:PRK07764  389 GGAGAPAAAAPSAAAAAPAAAPAPAAaAPAAAAAPAPAAAPQPAPAPAPAP-APPSPAGNAPAGGAPSPPPAAAPSAQPA 467

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   670 EAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAE----------------VKSPGEAKSPAAV-------- 725
Cdd:PRK07764  468 PAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAtlrerwpeilaavpkrSRKTWAILLPEATvlgvrgdt 547

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   726 -----KSPAEAKSPAAVKSPG----------------EAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSP 784
Cdd:PRK07764  548 lvlgfSTGGLARRFASPGNAEvlvtalaeelggdwqvEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAP 627

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   785 AEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEK 864
Cdd:PRK07764  628 APAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAA 707

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 94730399   865 AKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKVEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKETP 940
Cdd:PRK07764  708 TPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEE 783

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

681-806

5.49e-06

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 50.48 E-value: 5.49e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   681 GEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKS-PAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAkspA 759
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAaSAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV---A 446

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 94730399   760 EAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAE 806
Cdd:PRK14951  447 LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493

PRK07764

DNA polymerase III subunits gamma and tau; Validated

451-701

6.98e-06

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 50.37 E-value: 6.98e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   451 ETVIVEGQTEEIRVTEGVTEEEDKEAQGQEGEEAEEGEEKEEEEGAAATSPPAEEAASPeketksrvkeEAKSPGEAKSP 530
Cdd:PRK07764  567 AEVLVTALAEELGGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPA----------APAPAGAAAAP 636

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   531 GEAKSPAEAKSPGEAKSPGEAKSPGEAKSPaePKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAE 610
Cdd:PRK07764  637 AEASAAPAPGVAAPEHHPKHVAVPDASDGG--DGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQA 714

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   611 AKSPAEAKSPAEAKSPAEAKSPAEAKSPATvksPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGE--AKSPAE 688
Cdd:PRK07764  715 DDPAAQPPQAAQGASAPSPAADDPVPLPPE---PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEemAEDDAP 791

                         250
                  ....*....|...
gi 94730399   689 PKSPAEAKSPAEV 701
Cdd:PRK07764  792 SMDDEDRRDAEEV 804

motB

PRK05996

MotB family protein;

502-730

7.76e-06

MotB family protein;

Pssm-ID: 235665 [Multi-domain] Cd Length: 423 Bit Score: 49.70 E-value: 7.76e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   502 PAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPaeakspgeakSPGEAKSPGEAKSPAEPKSPAepkspAEAKSPAEP 581
Cdd:PRK05996   86 PVDGAEGEQKPGKSKFEEDQRVEGSSAVTGDDTTR----------TSGDQTNYSEADLFRNPYAVL-----AEIAQEVGQ 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   582 KSPATVKSPGEAKS--PSEAKSPAEA----------KSPAEAKSPAEAKSPAEAKSPAEAKsPAEAKSPATVKSPGEAKS 649
Cdd:PRK05996  151 QANVSAKGDGGAAQsgPATGADGGEAyrdpfdpdfwSKQVEVTTAGDLLPPGQAREQAQGA-KSATAAPATVPQAAPLPQ 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   650 PSEAKSPAEAKSPAEAKSPAEAKSPAEvkspGEAKSPAEPKSPAEAKSPAEvkspAEAKSPAEVKSPGEAKSPAAVKSPA 729
Cdd:PRK05996  230 AQPKKAATEEELIADAKKAATGEPAAN----AAKAAKPEPMPDDQQKEAEQ----LQAAIAQAIGGVAGKLAEGVTVTPV 301


                  .
gi 94730399   730 E 730
Cdd:PRK05996  302 E 302

PRK07994

DNA polymerase III subunits gamma and tau; Validated

599-766

8.37e-06

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 49.86 E-value: 8.37e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   599 AKSPAEAkSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPgeaksPSEAKSPAEAKSPAEAKSPAEAKSPAEVK 678
Cdd:PRK07994  358 AFHPAAP-LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPP-----PASAPQQAPAVPLPETTSQLLAARQQLQR 431

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   679 SPGEAKSPaePKSPAEAKSPAEVKSPAE---AKSPAEVKSPGEAKSPAAvkSPAEAKSPAAVKSPGEAKsPGEAKSPAEA 755
Cdd:PRK07994  432 AQGATKAK--KSEPAAASRARPVNSALErlaSVRPAPSALEKAPAKKEA--YRWKATNPVEVKKEPVAT-PKALKKALEH 506

                         170
                  ....*....|..
gi 94730399   756 -KSPAEAKSPIE 766
Cdd:PRK07994  507 eKTPELAAKLAA 518

PRK07994

DNA polymerase III subunits gamma and tau; Validated

551-706

8.66e-06

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 49.86 E-value: 8.66e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   551 AKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPatvksPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAK 630
Cdd:PRK07994  369 EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPP-----PASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEP 443

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 94730399   631 SPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAkSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAE 706
Cdd:PRK07994  444 AAASRARPVNSALERLASVRPAPSALEKAPAKKEA-YRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAA 518

PRK07994

DNA polymerase III subunits gamma and tau; Validated

533-700

8.96e-06

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 49.86 E-value: 8.96e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   533 AKSPAEAKSPGEAkSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPkSPATVKSPGEAKSPSEAKSPAEAKSPAEAK 612
Cdd:PRK07994  358 AFHPAAPLPEPEV-PPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPAS-APQQAPAVPLPETTSQLLAARQQLQRAQGA 435

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   613 SPAEAKSPAEAKSPAEAKSPAEakspaTVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKsPGEAKSPAEP-KS 691
Cdd:PRK07994  436 TKAKKSEPAAASRARPVNSALE-----RLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVAT-PKALKKALEHeKT 509


                  ....*....
gi 94730399   692 PAEAKSPAE 700
Cdd:PRK07994  510 PELAAKLAA 518

PRK07994

DNA polymerase III subunits gamma and tau; Validated

563-721

9.35e-06

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 49.86 E-value: 9.35e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   563 PKSP-AEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATV 641
Cdd:PRK07994  361 PAAPlPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   642 KSPGEAKSPSEAKSPAEA-KSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKsPAEVKSPAEAKSPAEVKSPGEAK 720
Cdd:PRK07994  441 SEPAAASRARPVNSALERlASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVAT-PKALKKALEHEKTPELAAKLAAE 519


                  .
gi 94730399   721 S 721
Cdd:PRK07994  520 A 520

2A1904

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...

517-760

9.45e-06

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]

Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 49.99 E-value: 9.45e-06

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    517 VKEEAKSPGEaKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEpkSPAEAKSPAEPKSPATVKSPGEAKSP 596
Cdd:TIGR00927  634 DVAEAEHTGE-RTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGE--IPAERKGEQEGEGEIEAKEADHKGET 710

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    597 SEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAE 676
Cdd:TIGR00927  711 EAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGE 790

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    677 VKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAK 756
Cdd:TIGR00927  791 MKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEE 870


                   ....
gi 94730399    757 SPAE 760
Cdd:TIGR00927  871 EEEE 874

tolA

cell envelope integrity inner membrane protein TolA; Provisional

599-714

1.05e-05

cell envelope integrity inner membrane protein TolA; Provisional

Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 49.03 E-value: 1.05e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   599 AKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVK 678
Cdd:PRK09510  139 AKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 94730399   679 SPGEAKSPAEpKSPAEAKSPAEVKSPAEAKSPAEVK 714
Cdd:PRK09510  219 AAAEAKAAAA-KAAAEAKAAAEKAAAAKAAEKAAAA 253

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

657-780

1.06e-05

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 49.71 E-value: 1.06e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   657 AEAKSPAEAKSPAEAKSPAEVKSP-GEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPA 735
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPvAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 94730399   736 AVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEG 780
Cdd:PRK14951  450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEG 494

PRK07994

DNA polymerase III subunits gamma and tau; Validated

514-676

1.08e-05

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 49.48 E-value: 1.08e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   514 KSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAE-PKSPAEAKSPAEPKSPATVKSPGE 592
Cdd:PRK07994  362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPeTTSQLLAARQQLQRAQGATKAKKS 441

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   593 AKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAkSPAEAKSPATVKSPGEAKsPSEAKSPAEAKSPAE--AKSPAE 670
Cdd:PRK07994  442 EPAAASRARPVNSALERLASVRPAPSALEKAPAKKEA-YRWKATNPVEVKKEPVAT-PKALKKALEHEKTPElaAKLAAE 519


                  ....*.
gi 94730399   671 AKSPAE 676
Cdd:PRK07994  520 AIERDP 525

tolA

cell envelope integrity inner membrane protein TolA; Provisional

609-726

1.19e-05

cell envelope integrity inner membrane protein TolA; Provisional

Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 49.03 E-value: 1.19e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   609 AEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAE 688
Cdd:PRK09510  137 AAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAK 216

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 94730399   689 PKSPAEAKSPAEvKSPAEAKSPAEVKSPGEAKSPAAVK 726
Cdd:PRK09510  217 KKAAAEAKAAAA-KAAAEAKAAAEKAAAAKAAEKAAAA 253

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

506-634

1.42e-05

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 48.94 E-value: 1.42e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   506 AASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPA-EAKSPAEPKSP 584
Cdd:PRK14951  363 AFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAaAAPAAAPAAAP 442

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 94730399   585 ATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAE 634
Cdd:PRK14951  443 AAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492

PRK13108

prolipoprotein diacylglyceryl transferase; Reviewed

522-689

1.42e-05

prolipoprotein diacylglyceryl transferase; Reviewed

Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 48.82 E-value: 1.42e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   522 KSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAkSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSpgEAKSPSEAKS 601
Cdd:PRK13108  280 EAPGALRGSEYVVDEALEREPAELAAAAVASAASAV-GPVGPGEPNQPDDVAEAVKAEVAEVTDEVAA--ESVVQVADRD 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   602 PAEAKSPAEAKSPA---EAKSPAEAKSPAEAKSPAEAKSPAtvksPGEAKS-PSEAKSPAEAKSPAEAKSPAEAKSPAEV 677
Cdd:PRK13108  357 GESTPAVEETSEADierEQPGDLAGQAPAAHQVDAEAASAA----PEEPAAlASEAHDETEPEVPEKAAPIPDPAKPDEL 432

                         170
                  ....*....|..
gi 94730399   678 KSPGEAKSPAEP 689
Cdd:PRK13108  433 AVAGPGDDPAEP 444

COG4913

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];

88-349

1.83e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];

Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.83e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   88 AAVAARSEKEQLQALNDRFAGYIDKVRQLEAhnrsLEGEAAALRQQQAGRAAmgELYEREVREMRGAVLRLGAARGQLRL 167
Cdd:COG4913  243 ALEDAREQIELLEPIRELAERYAAARERLAE----LEYLRAALRLWFAQRRL--ELLEAELEELRAELARLEAELERLEA 316

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  168 EQEHLLEDIAHVRQRLdeearqreeaeaaaralarfaQEAEAARVE-LQKKAQALQEEcgylRRHHQEEVGELLGQIQGC 246
Cdd:COG4913  317 RLDALREELDELEAQI---------------------RGNGGDRLEqLEREIERLERE----LEERERRRARLEALLAAL 371

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  247 GAAQAQAQaeardalkcdvtSALREIRAQLeghavqstlqseewfRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQAR 326
Cdd:COG4913  372 GLPLPASA------------EEFAALRAEA---------------AALLEALEEELEALEEALAEAEAALRDLRRELREL 424

                        250       260
                 ....*....|....*....|....*..
gi 94730399  327 TTELEALKSTK----ESLERQRSELED 349
Cdd:COG4913  425 EAEIASLERRKsnipARLLALRDALAE 451

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

556-641

1.86e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 49.12 E-value: 1.86e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   556 EAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEA 635
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113


                  ....*.
gi 94730399   636 KSPATV 641
Cdd:PRK12270  114 EDEVTP 119

PRK12323

DNA polymerase III subunit gamma/tau;

704-899

1.96e-05

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 48.72 E-value: 1.96e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   704 PAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAeAKSPAEAKSPIEVKSPEKAKTPVKEGAKS 783
Cdd:PRK12323  375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA-RRSPAPEALAAARQASARGPGGAPAPAPA 453

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   784 PAEAKSPeKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPvqeeAKHPTDIRPPEQVKSPAKE 863
Cdd:PRK12323  454 PAAAPAA-AARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASP----APAQPDAAPAGWVAESIPD 528

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 94730399   864 KAKSPEKEEAKTS--EKVAPKKEEVKSPVKEEVKAKEP 899
Cdd:PRK12323  529 PATADPDDAFETLapAPAAAPAPRAAAATEPVVAPRPP 566

COG4995

Uncharacterized conserved protein, contains CHAT domain [Function unknown];

88-373

2.07e-05

Uncharacterized conserved protein, contains CHAT domain [Function unknown];

Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 48.81 E-value: 2.07e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   88 AAVAARSEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVREMRGAVLRLGAARGQLRL 167
Cdd:COG4995  176 ALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAALAAAAA 255

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  168 EQEHLLEDIAHVRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLGQIQGCG 247
Cdd:COG4995  256 ALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLLAALALLAL 335

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  248 AAQAQAQAEARDALKCDVTSALREIRAQLEGHAVQSTLQSEEWFRVR-LDRLSEAAKVNTDAMRSAQEEITEYRRQLQAR 326
Cdd:COG4995  336 LLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALlLLLLALLAALLLLAAALLALAAAQLLRLLLAA 415

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 94730399  327 TTELEALKSTKESLERQRSELE-----DRHQADIASYQDAIQQLDSELRNTK 373
Cdd:COG4995  416 LALLLALAAYAAARLALLALIEyiilpDRLYAFVQLYQLLIAPIEAELPGIK 467

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

605-684

2.24e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 48.73 E-value: 2.24e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   605 AKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAK 684
Cdd:PRK12270   39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118

PRK12323

DNA polymerase III subunit gamma/tau;

694-881

2.28e-05

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 48.72 E-value: 2.28e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   694 EAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGeAKSPAEAKSPAEAKSPIEVKSPEKA 773
Cdd:PRK12323  371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA-RRSPAPEALAAARQASARGPGGAPA 449

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   774 KTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAkSPEKAKSPVKEGAKPPEKAKP-LDVKSPEAQTP-----VQEEAKH 847
Cdd:PRK12323  450 PAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARA-APAAAPAPADDDPPPWEELPPeFASPAPAQPDAapagwVAESIPD 528

                         170       180       190
                  ....*....|....*....|....*....|....
gi 94730399   848 PTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAP 881
Cdd:PRK12323  529 PATADPDDAFETLAPAPAAAPAPRAAAATEPVVA 562

KREPA2

cd23959

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...

593-746

2.30e-05

Pssm-ID: 467780 [Multi-domain] Cd Length: 424 Bit Score: 48.33 E-value: 2.30e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  593 AKSPSEAKSPAeakSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPaeaksPAEAK 672
Cdd:cd23959  100 AMAPDESLGPF---RAARVPNPFSASSSTQRETHKTAQVAPPKAEPQTAPVTPFGQLPMFGQHPPPAKPL-----PAAAA 171

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 94730399  673 SPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVkSPAEAKSPAAVKSPGEAKSP 746
Cdd:cd23959  172 AQQSSASPGEVASPFASGTVSASPFATATDTAPSSGAPDGFPAEASAPSPFAA-PASAASFPAAPVANGEAATP 244

PRK05035

electron transport complex protein RnfC; Provisional

551-762

2.32e-05

electron transport complex protein RnfC; Provisional

Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 48.41 E-value: 2.32e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   551 AKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAK 630
Cdd:PRK05035  473 HKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAVAA 552

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   631 SPAEAKSPATVKSPGEAKSPSEA--KSPAEAKSPAEAKSPAEAKSPAEVkSPGEAKSPAEPKSPAEAKSPAEVKSPAEAK 708
Cdd:PRK05035  553 AIARAKAKKAAQQAANAEAEEEVdpKKAAVAAAIARAKAKKAAQQAASA-EPEEQVAEVDPKKAAVAAAIARAKAKKAEQ 631

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 94730399   709 SPAEVKSPGEAKSPAAVK---SPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAK 762
Cdd:PRK05035  632 QANAEPEEPVDPRKAAVAaaiARAKARKAAQQQANAEPEEAEDPKKAAVAAAIARAK 688

tolA

cell envelope integrity inner membrane protein TolA; Provisional

593-708

2.36e-05

cell envelope integrity inner membrane protein TolA; Provisional

Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 47.88 E-value: 2.36e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   593 AKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAK 672
Cdd:PRK09510  139 AKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 94730399   673 SPAEVKSpGEAKSPAEPKSPAEAKSPAEVKSPAEAK 708
Cdd:PRK09510  219 AAAEAKA-AAAKAAAEAKAAAEKAAAAKAAEKAAAA 253

PRK07735

NADH-quinone oxidoreductase subunit C;

604-893

2.37e-05

NADH-quinone oxidoreductase subunit C;

Pssm-ID: 236081 [Multi-domain] Cd Length: 430 Bit Score: 48.05 E-value: 2.37e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   604 EAKSPAEAKSPAEAKSPAEAKSPAEAKSPAE-AKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGE 682
Cdd:PRK07735    3 PEKDLEDLKKEAARRAKEEARKRLVAKHGAEiSKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKAKAAALAKQKREGT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   683 AKSPAEPKSPAEAKSPAEvkspAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSpgeakspgEAKSPAEAKSPAEAK 762
Cdd:PRK07735   83 EEVTEEEKAKAKAKAAAA----AKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAA--------KAKAAALAKQKREGT 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   763 SPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLdvkspeAQTPVQ 842
Cdd:PRK07735  151 EEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAKAAAAAKAKAAAL------AKQKAS 224

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 94730399   843 EEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEE 893
Cdd:PRK07735  225 QGNGDSGDEDAKAKAIAAAKAKAAAAARAKTKGAEGKKEEEPKQEEPSVNQ 275

PHA03307

transcriptional regulator ICP4; Provisional

531-686

2.50e-05

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 48.63 E-value: 2.50e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   531 GEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAE 610
Cdd:PHA03307  769 AEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPA 848

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 94730399   611 AKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAeAKSPAEAKSPAEAKSPAEVKSPGEAKSP 686
Cdd:PHA03307  849 RSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAA-PPAGAPAPRPRPAPRVKLGPMPPGGPDP 923

dnaA

PRK14086

chromosomal replication initiator protein DnaA;

501-710

2.55e-05

chromosomal replication initiator protein DnaA;

Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 48.28 E-value: 2.55e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   501 PPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKS----PGEAKSPAEPKSPAEPKSPAEAK 576
Cdd:PRK14086   90 PSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTArpayPAYQQRPEPGAWPRAADDYGWQQ 169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   577 SPAEPKSPATVKSPGEAKSPSE--AKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAK 654
Cdd:PRK14086  170 QRLGFPPRAPYASPASYAPEQErdREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERD 249

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 94730399   655 SPAEAKSPAEAKSPaEAKSPAEVKSPGEAKSPAEPKSP------------AEAKSPAEVKSPAEAKSP 710
Cdd:PRK14086  250 DAPVVPIRPSAPGP-LAAQPAPAPGPGEPTARLNPKYTfdtfvigasnrfAHAAAVAVAEAPAKAYNP 316

PLN03237

DNA topoisomerase 2; Provisional

615-877

2.68e-05

DNA topoisomerase 2; Provisional

Pssm-ID: 215641 [Multi-domain] Cd Length: 1465 Bit Score: 48.71 E-value: 2.68e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   615 AEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPgEAKSPAEPKSPAE 694
Cdd:PLN03237 1175 AEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKP-KGRAGAKKKAPAA 1253

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   695 AKSPAEVKSPAEAKSPAEVKSPGEAKSPAAvKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPE--- 771
Cdd:PLN03237 1254 AKEKEEEDEILDLKDRLAAYNLDSAPAQSA-KMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERlkk 1332

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   772 ----KAKTPVKEGAKSPAEAKSPEKAKSPVKED----IKPPAEAKSPEKAKSPVKEGAKPPEK---------AKPLDVKS 834
Cdd:PLN03237 1333 kggrKPAAANKKAAKPPAAAKKRGPATVQSGQKllteMLKPAEAIGISPEKKVRKMRASPFNKksgsvlgraATNKETES 1412

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 94730399   835 PEAQTPVQEEAKHPTDI----RPPEQVKSPAKEKAKSPEKEEAKTSE 877
Cdd:PLN03237 1413 SENVSGSSSSEKDEIDVsakpRPQRANRKQTTYVLSDSESESADDSD 1459

tolA

cell envelope integrity inner membrane protein TolA; Provisional

592-736

3.31e-05

cell envelope integrity inner membrane protein TolA; Provisional

Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 47.49 E-value: 3.31e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   592 EAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEA 671
Cdd:PRK09510  116 QKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKA 195

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 94730399   672 KSPAEVKSPGEAKSPAepKSPAEAKSPAEVKSPAeAKSPAEVKSPGEAKSPAAVKSPAEAKSPAA 736
Cdd:PRK09510  196 AAEAKKKAEAEAKKKA--AAEAKKKAAAEAKAAA-AKAAAEAKAAAEKAAAAKAAEKAAAAKAAA 257

PLN03237

DNA topoisomerase 2; Provisional

499-678

3.39e-05

DNA topoisomerase 2; Provisional

Pssm-ID: 215641 [Multi-domain] Cd Length: 1465 Bit Score: 48.32 E-value: 3.39e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   499 TSPPAEEAASPEKETKSRVKEEAKSPgeakspgeakSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSP 578
Cdd:PLN03237 1276 DSAPAQSAKMEETVKAVPARRAAARK----------KPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGRKPAAANKKA 1345

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   579 AEPksPATVKSPGEAKSPSEAKSPAEAKSPAEAK-SPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPG--EAKSPSEAKS 655
Cdd:PLN03237 1346 AKP--PAAAKKRGPATVQSGQKLLTEMLKPAEAIgISPEKKVRKMRASPFNKKSGSVLGRAATNKETEssENVSGSSSSE 1423

                         170       180
                  ....*....|....*....|...
gi 94730399   656 PAEAKSPAEAKSPAEAKSPAEVK 678
Cdd:PLN03237 1424 KDEIDVSAKPRPQRANRKQTTYV 1446

PRK05035

electron transport complex protein RnfC; Provisional

592-814

3.41e-05

electron transport complex protein RnfC; Provisional

Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 48.02 E-value: 3.41e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   592 EAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSP--AEAKSPA 669
Cdd:PRK05035  478 EARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAavAAAIARA 557

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   670 EAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVkspgEAKSPAAVKSPAEAKSPAAVKSPGEAKspgea 749
Cdd:PRK05035  558 KAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAASA----EPEEQVAEVDPKKAAVAAAIARAKAKK----- 628

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 94730399   750 kspAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAK 814
Cdd:PRK05035  629 ---AEQQANAEPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPEEAEDPKKAAVAAAIARAKAK 690

PHA03378

EBNA-3B; Provisional

556-944

3.41e-05

EBNA-3B; Provisional

Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 48.14 E-value: 3.41e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   556 EAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKS-PSEAKSPAEAKSPAEAKSPaeaksPAEAKSPAEAKSPAE 634
Cdd:PHA03378  549 ESDEPASTEPVHDQLLPAPGLGPLQIQPLTSPTTSQLASSaPSYAQTPWPVPHPSQTPEP-----PTTQSHIPETSAPRQ 623

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   635 AKSPATVKSPGEAKSPSEAKSPAEAKSPAEakSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAevK 714
Cdd:PHA03378  624 WPMPLRPIPMRPLRMQPITFNVLVFPTPHQ--PPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPP--R 699

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   715 SPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAE--AKSPIEVKSPEKAKTPVKEGAKSPAeakspek 792
Cdd:PHA03378  700 APTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARppAAAPGRARPPAAAPGRARPPAAAPG------- 772

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   793 AKSPVKEDIKPPAEAKSPEKAKSPvkegaKPPEKAKPLDVK-SPEAQTPVQEEAKHPTDIRPPEQVKS--PAKEKAKSPE 869
Cdd:PHA03378  773 APTPQPPPQAPPAPQQRPRGAPTP-----QPPPQAGPTSMQlMPRAAPGQQGPTKQILRQLLTGGVKRgrPSLKKPAALE 847

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   870 KEEA---KTSEKVAPKKEEVKSPV--KEEVKAKEPPKKVEEEKTL--------PTPKTEAKESKKDEAPKEAPKPKVEEK 936
Cdd:PHA03378  848 RQAAagpTPSPGSGTSDKIVQAPVfyPPVLQPIQVMRQLGSVRAAaastvtqaPTEYTGERRGVGPMHPTDIPPSKRAKT 927


                  ....*...
gi 94730399   937 KETPTEKP 944
Cdd:PHA03378  928 DAYVESQP 935

tolA

cell envelope integrity inner membrane protein TolA; Provisional

598-738

3.74e-05

cell envelope integrity inner membrane protein TolA; Provisional

Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 47.49 E-value: 3.74e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   598 EAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKspAEV 677
Cdd:PRK09510  116 QKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAE--AAA 193

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 94730399   678 KSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEvKSPGEAKSPAAVKSPAEAKSPAAVK 738
Cdd:PRK09510  194 KAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAA-KAAAEAKAAAEKAAAAKAAEKAAAA 253

PLN03209

translocon at the inner envelope of chloroplast subunit 62; Provisional

556-829

3.76e-05

translocon at the inner envelope of chloroplast subunit 62; Provisional

Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 47.61 E-value: 3.76e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   556 EAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKspAEAKSPAEAKSPAEAKSPAEA 635
Cdd:PLN03209  308 ETTAPLTPMEELLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPK--AVVPRPLSPYTAYEDLKPPTS 385

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   636 KSPATVKSPGEAKSPSEAKS-PAEAKSPAeakSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKspAEVKSPAEAKSPAEVK 714
Cdd:PLN03209  386 PIPTPPSSSPASSKSVDAVAkPAEPDVVP---SPGSASNVPEVEPAQVEAKKTRPLSPYARY--EDLKPPTSPSPTAPTG 460

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   715 SPGEAKSPAAVKSPAEAKSPAAVkspGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAK 794
Cdd:PLN03209  461 VSPSVSSTSSVPAVPDTAPATAA---TDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAP 537

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 94730399   795 SPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKP 829
Cdd:PLN03209  538 PTALADEQHHAQPKPRPLSPYTMYEDLKPPTSPTP 572

tolA

cell envelope integrity inner membrane protein TolA; Provisional

647-762

3.78e-05

cell envelope integrity inner membrane protein TolA; Provisional

Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 47.49 E-value: 3.78e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   647 AKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVK 726
Cdd:PRK09510  139 AKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 94730399   727 SPAEAKSPAAvKSPGEAKSPGEAKSPAEAKSPAEAK 762
Cdd:PRK09510  219 AAAEAKAAAA-KAAAEAKAAAEKAAAAKAAEKAAAA 253

PRK12323

DNA polymerase III subunit gamma/tau;

706-903

4.21e-05

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 47.56 E-value: 4.21e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   706 EAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAeAKSPIEVKSPEKAKTPVKEGAKSPA 785
Cdd:PRK12323  371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA-RRSPAPEALAAARQASARGPGGAPA 449

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   786 EAKSPekAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPeaqtPVQEEAKHPTDIRPPEQVKSPAKEKA 865
Cdd:PRK12323  450 PAPAP--AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPP----PWEELPPEFASPAPAQPDAAPAGWVA 523

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 94730399   866 KSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKV 903
Cdd:PRK12323  524 ESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVV 561

PRK10263

DNA translocase FtsK; Provisional

723-1089

4.85e-05

DNA translocase FtsK; Provisional

Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 47.77 E-value: 4.85e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   723 AAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEG-AKSPAEAKSPEKAKSPVKEDI 801
Cdd:PRK10263  322 VAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGyPQQSQYAQPAVQYNEPLQQPV 401

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   802 KPPAEAKSPEKAKSP-VKEGAKPPEKAKPLDVKSPEAQTPVQEEAKHPtdiRPPEQVKSPakekaKSPEKEEAKTSEKVA 880
Cdd:PRK10263  402 QPQQPYYAPAAEQPAqQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQA---EEQQSTFAP-----QSTYQTEQTYQQPAA 473

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   881 PKKEEVKSPVKEEVKAKEPPKKVEEEKTLPTP-----KTEAKESKKDEAPKEAPKPKVEEKKETPTEKPKDSTAEAKKEE 955
Cdd:PRK10263  474 QEPLYQQPQPVEQQPVVEPEPVVEETKPARPPlyyfeEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVP 553

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   956 AGEKKKAVAseeetPAKLGVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETE-------KPKKEEMPAAPE--------- 1019
Cdd:PRK10263  554 PVEAAAAVS-----PLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEgigpqlpRPKRIRVPTRRElasygiklp 628

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  1020 KKDTKEEKTTESRKPEEKPKMEAKVKEDDKSLSKEPSKPKTEKAEKSSSTDQKESQPPEKTTEDKATKGE 1089
Cdd:PRK10263  629 SQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAE 698

PRK13108

prolipoprotein diacylglyceryl transferase; Reviewed

575-745

4.96e-05

prolipoprotein diacylglyceryl transferase; Reviewed

Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 47.28 E-value: 4.96e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   575 AKSPAEPKsPATVKSPGEAKSPSEAkSPAEAKSPAEAKSPAE-AKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEA 653
Cdd:PRK13108  292 VDEALERE-PAELAAAAVASAASAV-GPVGPGEPNQPDDVAEaVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEA 369

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   654 KSPAEAKSPAEAKSPAEAKSPAEvkspGEAKSPAEPKS-PAEAKSPAEvksPAEAKSPAEVKSPGEAKSPAAVKSPAEAK 732
Cdd:PRK13108  370 DIEREQPGDLAGQAPAAHQVDAE----AASAAPEEPAAlASEAHDETE---PEVPEKAAPIPDPAKPDELAVAGPGDDPA 442

                         170
                  ....*....|...
gi 94730399   733 SPAAVKSPGEAKS 745
Cdd:PRK13108  443 EPDGIRRQDDFSS 455

PHA03307

transcriptional regulator ICP4; Provisional

655-1018

5.04e-05

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 47.47 E-value: 5.04e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   655 SPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSP 734
Cdd:PHA03307   21 FPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASP 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   735 AAVKSPGEAKSPGEAKSPAEAkSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEkak 814
Cdd:PHA03307  101 AREGSPTPPGPSSPDPPPPTP-PPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPL--- 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   815 spvkegAKPPEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEV 894
Cdd:PHA03307  177 ------SSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWG 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   895 KAKEPPKKVEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKLG 974
Cdd:PHA03307  251 PENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTS 330

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 94730399   975 VKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAAP 1018
Cdd:PHA03307  331 SSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRA 374

PTZ00372

endonuclease 4-like protein; Provisional

1001-1083

5.23e-05

endonuclease 4-like protein; Provisional

Pssm-ID: 240388 Cd Length: 413 Bit Score: 47.02 E-value: 5.23e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  1001 SKPTETEKPKKEEMPAAPE--KKDTKEEKTTESRKPEEKPKMEAKVKEDDKSLSKEPSKPKTEKAEKssstDQKESQPPE 1078
Cdd:PTZ00372   34 LSKEILSTFSEEENKVATTstKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSK----KTKKKPPKP 109


                  ....*
gi 94730399  1079 KTTED 1083
Cdd:PTZ00372  110 KPNED 114

COG4913

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];

96-388

5.27e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];

Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 5.27e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   96 KEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVrEMRGAVLRLGAARGQL-RLEQEHllE 174
Cdd:COG4913  609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEI-DVASAEREIAELEAELeRLDASS--D 685

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  175 DIAHVRQRLDeearqreeaeaaaralarfaqEAEAARVELQKKAQALQEECGYLrrhhQEEVGELLGQIQGCGAAQAQAQ 254
Cdd:COG4913  686 DLAALEEQLE---------------------ELEAELEELEEELDELKGEIGRL----EKELEQAEEELDELQDRLEAAE 740

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  255 AEARDALkcdvTSALREIRAQLEGHAVQSTLQseEWFRVRLDRLSEAAKVNTDAMRSAQ------------------EEI 316
Cdd:COG4913  741 DLARLEL----RALLEERFAAALGDAVERELR--ENLEERIDALRARLNRAEEELERAMrafnrewpaetadldadlESL 814

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  317 TEYRRQLQA-RTTELEALkstKESLERQRSELEDRHQADIASY--------QDAIQQLDSELRNT------------KWE 375
Cdd:COG4913  815 PEYLALLDRlEEDGLPEY---EERFKELLNENSIEFVADLLSKlrraireiKERIDPLNDSLKRIpfgpgrylrleaRPR 891

                        330
                 ....*....|...
gi 94730399  376 MAAQLREYQDLLN 388
Cdd:COG4913  892 PDPEVREFRQELR 904

PHA03307

transcriptional regulator ICP4; Provisional

573-764

5.39e-05

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 47.47 E-value: 5.39e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   573 AEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSP--AEAKSPATVKSPGEAKSP 650
Cdd:PHA03307  730 ARTVAPLVRYSPRRARARASAWDITDALFSNPSLVPAKLAEALALLEPAEPQRGAGSSPPvrAEAAFRRPGRLRRSGPAA 809

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   651 SEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKS-PAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPA 729
Cdd:PHA03307  810 DAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPARSsESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPP 889

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 94730399   730 EAKSPAAvKSPGEAKSPGEAKSPAEAKSPAEAKSP 764
Cdd:PHA03307  890 KAAAAAP-PAGAPAPRPRPAPRVKLGPMPPGGPDP 923

PHA03269

envelope glycoprotein C; Provisional

707-827

5.42e-05

envelope glycoprotein C; Provisional

Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 47.03 E-value: 5.42e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   707 AKSPAEVKSPGEAKSPAAVKS-PAEAKSPAAVKSPGEAKSPGEAKSpaEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPA 785
Cdd:PHA03269   20 ANLNTNIPIPELHTSAATQKPdPAPAPHQAASRAPDPAVAPTSAAS--RKPDLAQAPTPAASEKFDPAPAPHQAASRAPD 97

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 94730399   786 EAKSPEKAKSPVKEDIKPPAEA--KSPEKAKSPVKEGAKPPEKA 827
Cdd:PHA03269   98 PAVAPQLAAAPKPDAAEAFTSAaqAHEAPADAGTSAASKKPDPA 141

PRK12323

DNA polymerase III subunit gamma/tau;

458-657

5.58e-05

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 47.18 E-value: 5.58e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   458 QTEEIRVTEGVTEEEDKEAQGQEGEEAEEGEEKEEEEGAAATSPPAEEAASPEKETKSRVKEEAKSPGEAKSPgeakSPA 537
Cdd:PRK12323  384 QPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAA----APA 459

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   538 EAKSPGEAKSPGEAKSPGEAKSPAEPksPAEPKSPAEAKSPAEpKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEA 617
Cdd:PRK12323  460 AAARPAAAGPRPVAAAAAAAPARAAP--AAAPAPADDDPPPWE-ELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDD 536

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 94730399   618 KSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPA 657
Cdd:PRK12323  537 AFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDM 576

PRK13108

prolipoprotein diacylglyceryl transferase; Reviewed

557-727

5.64e-05

prolipoprotein diacylglyceryl transferase; Reviewed

Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 46.90 E-value: 5.64e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   557 AKSPAEPKsPAEPKSPAEAkSPAEPKSPAtvkSPGEAKSPSE-AKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEA 635
Cdd:PRK13108  292 VDEALERE-PAELAAAAVA-SAASAVGPV---GPGEPNQPDDvAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEET 366

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   636 KSPATVKspgEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKS 715
Cdd:PRK13108  367 SEADIER---EQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPAE 443

                         170
                  ....*....|..
gi 94730399   716 PGEAKSPAAVKS 727
Cdd:PRK13108  444 PDGIRRQDDFSS 455

PHA03307

transcriptional regulator ICP4; Provisional

543-698

5.77e-05

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 47.47 E-value: 5.77e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   543 GEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAE 622
Cdd:PHA03307  769 AEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPA 848

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 94730399   623 AKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAeAKSPAEVKSPGEAKSPAEPKSPAEAKSP 698
Cdd:PHA03307  849 RSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAA-PPAGAPAPRPRPAPRVKLGPMPPGGPDP 923

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

671-750

5.92e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 47.19 E-value: 5.92e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   671 AKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAK 750
Cdd:PRK12270   39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118

pylS

pyrrolysine--tRNA(Pyl) ligase;

512-601

5.95e-05

pyrrolysine--tRNA(Pyl) ligase;

Pssm-ID: 236555 [Multi-domain] Cd Length: 417 Bit Score: 46.76 E-value: 5.95e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   512 ETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPG 591
Cdd:PRK09537   88 EDKTQVKVKVVSAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETLLSPK 167

                          90
                  ....*....|
gi 94730399   592 EAKSPSEAKS 601
Cdd:PRK09537  168 DKISLNSEKP 177

PHA03378

EBNA-3B; Provisional

548-824

6.28e-05

EBNA-3B; Provisional

Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 47.37 E-value: 6.28e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   548 PGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPA 627
Cdd:PHA03378  673 PYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPG 752

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   628 EAKSPAEAKSPAtvkSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAevKSPAEA 707
Cdd:PHA03378  753 RARPPAAAPGRA---RPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPT--KQILRQ 827

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   708 KSPAEVKSpgeaKSPAAVKSPAEAKSPAAVKSPgeakSPGEAKSPAEAKSPA---EAKSPIEVKSPEKAKTPVKEGA--K 782
Cdd:PHA03378  828 LLTGGVKR----GRPSLKKPAALERQAAAGPTP----SPGSGTSDKIVQAPVfypPVLQPIQVMRQLGSVRAAAASTvtQ 899

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 94730399   783 SPAEAKSPEKAKSPVK-EDIKPPAEAKSPEKAKSPVKEGAKPP 824
Cdd:PHA03378  900 APTEYTGERRGVGPMHpTDIPPSKRAKTDAYVESQPPHGGQSH 942

tolA

cell envelope integrity inner membrane protein TolA; Provisional

567-684

6.30e-05

cell envelope integrity inner membrane protein TolA; Provisional

Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 46.72 E-value: 6.30e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   567 AEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGE 646
Cdd:PRK09510  137 AAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAK 216

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 94730399   647 AKSPSEAKSPAeAKSPAEAKSPAEAKSPAEVKSPGEAK 684
Cdd:PRK09510  217 KKAAAEAKAAA-AKAAAEAKAAAEKAAAAKAAEKAAAA 253

SMC_prok_B

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...

87-381

6.53e-05

Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 6.53e-05

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399     87 VAAVAARSEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRqqqagrAAMGELyEREVREMRGAVLRLGAargqlr 166
Cdd:TIGR02168  229 LLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELR------LEVSEL-EEEIEELQKELYALAN------ 295

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    167 lEQEHLLEDIAHVRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLGQiqgc 246
Cdd:TIGR02168  296 -EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL---- 370

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    247 gAAQAQAQAEARDALKCDVTSALREIRA------QLEGHAVQSTLQSEEWFRVRLDRLSEAAKVNTDAMRSAQEEITEYR 320
Cdd:TIGR02168  371 -ESRLEELEEQLETLRSKVAQLELQIASlnneieRLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEEL 449

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 94730399    321 RQLQARTTELEA-LKSTKESLERQRSEL------EDRHQADIASYQDAIQQLDSELRNTKWEMAAQLR 381
Cdd:TIGR02168  450 EELQEELERLEEaLEELREELEEAEQALdaaereLAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517

PRK14954

DNA polymerase III subunits gamma and tau; Provisional

584-698

6.86e-05

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 46.86 E-value: 6.86e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   584 PATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAksPATVKSPGEAKSPSEAKSPAEAKSPA 663
Cdd:PRK14954  382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQ--PPVARSAPLPPSPQASAPRNVASGKP 459

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 94730399   664 EAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSP 698
Cdd:PRK14954  460 GVDLGSWQGKFMNFTRNGSRKQPVQASSSDAAQTG 494

PHA03247

large tegument protein UL36; Provisional

500-734

7.28e-05

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 47.24 E-value: 7.28e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   500 SPPAEEAASPEKE-TKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAkspgeakSPAEPKSPaePKSPAEAKSP 578
Cdd:PHA03247 2770 APPAAPAAGPPRRlTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA-------SPAGPLPP--PTSAQPTAPP 2840

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   579 AEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKS-PAEAKSPAEAKSPatvksPGEAKSPSEAKSPA 657
Cdd:PHA03247 2841 PPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLArPAVSRSTESFALP-----PDQPERPPQPQAPP 2915

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   658 EAKSPAEAKSPAEAKSPAEvkSPGEAKSPAEPKSPAEAKSPAEVKSPAE---AKSPAEVKSPGEAKSPAAVKSPAEAKSP 734
Cdd:PHA03247 2916 PPQPQPQPPPPPQPQPPPP--PPPRPQPPLAPTTDPAGAGEPSGAVPQPwlgALVPGRVAVPRFRVPQPAPSREAPASST 2993

PTZ00108

DNA topoisomerase 2-like protein; Provisional

760-1013

7.29e-05

DNA topoisomerase 2-like protein; Provisional

Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 46.96 E-value: 7.29e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   760 EAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQT 839
Cdd:PTZ00108 1149 EKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDD 1228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   840 PVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKvAPKKEEVKSPVKEEVKAKEPPKKVEEEKTLPTPKTEAKES 919
Cdd:PTZ00108 1229 EEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSK-EGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTK 1307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   920 KKDEAPKEaPKPKVEEKKETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKLGVKEEakpkektettkteaEDTKAKE 999
Cdd:PTZ00108 1308 KKVKKRLE-GSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSS--------------EDDDDSE 1372

                         250
                  ....*....|....
gi 94730399  1000 PSKPTETEKPKKEE 1013
Cdd:PTZ00108 1373 VDDSEDEDDEDDED 1386

pylS

pyrrolysine--tRNA(Pyl) ligase;

559-637

9.09e-05

pyrrolysine--tRNA(Pyl) ligase;

Pssm-ID: 236555 [Multi-domain] Cd Length: 417 Bit Score: 46.37 E-value: 9.09e-05

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 94730399   559 SPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKS 637
Cdd:PRK09537   99 SAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETLLSPKDKISLNSEKP 177

SMC_prok_B

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...

93-371

9.16e-05

Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 9.16e-05

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399     93 RSEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVREMRGAVLRLGAARGQLRLEQEHL 172
Cdd:TIGR02168  750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL 829

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    173 LEDIAHVRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEEcgylRRHHQEEVGELLGQIQgcgaaqaQ 252
Cdd:TIGR02168  830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE----RASLEEALALLRSELE-------E 898

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    253 AQAEARDALKcdVTSALREIRAQLEGHAVQSTLQSEEwFRVRLD----RLSEAAKVNTDAMRSAQEEITEYRRQLQARTT 328
Cdd:TIGR02168  899 LSEELRELES--KRSELRRELEELREKLAQLELRLEG-LEVRIDnlqeRLSEEYSLTLEEAEALENKIEDDEEEARRRLK 975

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 94730399    329 EL---------------EALKSTKESLERQRSELEDRHQAdIASYQDAIQQLDSELRN 371
Cdd:TIGR02168  976 RLenkikelgpvnlaaiEEYEELKERYDFLTAQKEDLTEA-KETLEEAIEEIDREARE 1032

PRK05035

electron transport complex protein RnfC; Provisional

502-709

1.02e-04

electron transport complex protein RnfC; Provisional

Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 46.48 E-value: 1.02e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   502 PAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSpgEAKSPAEPKSPAEPKSP--------A 573
Cdd:PRK05035  480 RAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQAR--ARQAEKQAAAAADPKKAavaaaiarA 557

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   574 EAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAkSPAEAKSPAEAKSPAEAKSPATVKSPGEAKS-PSE 652
Cdd:PRK05035  558 KAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAASA-EPEEQVAEVDPKKAAVAAAIARAKAKKAEQQaNAE 636

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 94730399   653 AKSPAEAKSPAEAK--SPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKS 709
Cdd:PRK05035  637 PEEPVDPRKAAVAAaiARAKARKAAQQQANAEPEEAEDPKKAAVAAAIARAKAKKAAQQ 695

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

579-672

1.07e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 46.42 E-value: 1.07e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   579 AEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKsPAEAKSPATvkspgeakSPSEAKSPAE 658
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPK-PAAAAAAAA--------APAAPPAAAA 104

                          90
                  ....*....|....
gi 94730399   659 AKSPAEAKSPAEAK 672
Cdd:PRK12270  105 AAAPAAAAVEDEVT 118

PTZ00108

DNA topoisomerase 2-like protein; Provisional

664-907

1.16e-04

DNA topoisomerase 2-like protein; Provisional

Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 46.58 E-value: 1.16e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   664 EAKSPAEAKSPaEVKSPGEAKSPAEPKSPAEAKSpaEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEA 743
Cdd:PTZ00108 1148 EEKEIAKEQRL-KSKTKGKASKLRKPKLKKKEKK--KKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSD 1224

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   744 KSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKP 823
Cdd:PTZ00108 1225 QEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSS 1304

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   824 PEKAKpldVKSPEAQTPVQEEAKHPTDIRPPEQVKSpaKEKAKSPEKEEAkTSEKVAPKKEEVKSPVKEEvKAKEPPKKV 903
Cdd:PTZ00108 1305 PTKKK---VKKRLEGSLAALKKKKKSEKKTARKKKS--KTRVKQASASQS-SRLLRRPRKKKSDSSSEDD-DDSEVDDSE 1377


                  ....
gi 94730399   904 EEEK 907
Cdd:PTZ00108 1378 DEDD 1381

PHA03307

transcriptional regulator ICP4; Provisional

525-680

1.16e-04

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 46.32 E-value: 1.16e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   525 GEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAE 604
Cdd:PHA03307  769 AEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPA 848

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 94730399   605 AKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPsEAKSPAEAKSPAEAKSPAEAKSPAEVKSP 680
Cdd:PHA03307  849 RSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAA-APPAGAPAPRPRPAPRVKLGPMPPGGPDP 923

PHA03247

large tegument protein UL36; Provisional

583-825

1.18e-04

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 46.47 E-value: 1.18e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   583 SPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPaeaksPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAksp 662
Cdd:PHA03247  256 APPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAP-----PDGVWGAALAGAPLALPAPPDPPPPAPAGDAEEE--- 327

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   663 AEAKSPAEAKSPaeVKSPGEAKSPAEPKSPAEAKSPAevkSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGE 742
Cdd:PHA03247  328 DDEDGAMEVVSP--LPRPRQHYPLGFPKRRRPTWTPP---SSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGD 402

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   743 AKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEgAK 822
Cdd:PHA03247  403 DQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRE-RR 481


                  ...
gi 94730399   823 PPE 825
Cdd:PHA03247  482 PPE 484

EnvC

COG4942

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...

159-402

1.22e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.22e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  159 GAARGQLRLEQEHLLEDIahvRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEEcgylRRHHQEEVGE 238
Cdd:COG4942   15 AAAQADAAAEAEAELEQL---QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQE----LAALEAELAE 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  239 LLGQIQgcgaaqaqAQAEARDALKCDVTSALREIRAQLEGHAVQSTLQSEEWFRvrLDRLSEAAKVNTDAMRSAQEEITE 318
Cdd:COG4942   88 LEKEIA--------ELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLD--AVRRLQYLKYLAPARREQAEELRA 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  319 YRRQLQARTTELEALKSTKESLERQRSELEDRHQADIASYQDAIQQLDSELRNTKWEMAAQLREYQDLLNVKMALDIEIA 398
Cdd:COG4942  158 DLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237


                 ....
gi 94730399  399 AYRK 402
Cdd:COG4942  238 AAAE 241

PRK07994

DNA polymerase III subunits gamma and tau; Validated

535-697

1.22e-04

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 46.01 E-value: 1.22e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   535 SPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPatvksPGEAKSPSEAKSPAEAKSPAEAKSP 614
Cdd:PRK07994  365 LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVP-----LPETTSQLLAARQQLQRAQGATKAK 439

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   615 AEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAkSPAEAKSPAEAKSPAEAKsPAEVKSPGEAKSPAEPKSPAE 694
Cdd:PRK07994  440 KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEA-YRWKATNPVEVKKEPVAT-PKALKKALEHEKTPELAAKLA 517


                  ...
gi 94730399   695 AKS 697
Cdd:PRK07994  518 AEA 520

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

534-618

1.26e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 46.42 E-value: 1.26e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   534 KSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAeakSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKS 613
Cdd:PRK12270   37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPA---AAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113


                  ....*
gi 94730399   614 PAEAK 618
Cdd:PRK12270  114 EDEVT 118

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

659-738

1.26e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 46.42 E-value: 1.26e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   659 AKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVK 738
Cdd:PRK12270   39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118

PHA03247

large tegument protein UL36; Provisional

539-745

1.27e-04

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 46.47 E-value: 1.27e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   539 AKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPaepksPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAK 618
Cdd:PHA03247  254 APAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAP-----PDGVWGAALAGAPLALPAPPDPPPPAPAGDAEEED 328

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   619 SPAEAKSPAEAKSPAEAKSPATVK----------------SPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGE 682
Cdd:PHA03247  329 DEDGAMEVVSPLPRPRQHYPLGFPkrrrptwtppssledlSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPA 408

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 94730399   683 AKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKS 745
Cdd:PHA03247  409 APVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATR 471

PRK14949

DNA polymerase III subunits gamma and tau; Provisional

562-729

1.33e-04

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 46.26 E-value: 1.33e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   562 EPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSP-SEAKSPAEAKSPAEAKSPAEAKSPAeakSPAEAKSPAEAKSPAT 640
Cdd:PRK14949  630 SPKEGDGKKSSADRKPKTPPSRAPPASLSKPASSPdASQTSASFDLDPDFELATHQSVPEA---ALASGSAPAPPPVPDP 706

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   641 VKSPgeaksPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAK 720
Cdd:PRK14949  707 YDRP-----PWEEAPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSPASTTALTQTSSEVQDT 781


                  ....*....
gi 94730399   721 SPAAVKSPA 729
Cdd:PRK14949  782 ELNLVLLSS 790

PRK10263

DNA translocase FtsK; Provisional

500-947

1.34e-04

DNA translocase FtsK; Provisional

Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 46.23 E-value: 1.34e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   500 SPPAEEAASPEKETKSRVKE-EAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSP 578
Cdd:PRK10263  394 NEPLQQPVQPQQPYYAPAAEqPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAA 473

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   579 AEP--KSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAeaksPATVKSPGEAKSPSEAKSP 656
Cdd:PRK10263  474 QEPlyQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPI----PEPVKEPEPIKSSLKAPSV 549

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   657 AEAkSPAEAkSPAEAKSPAEVKSPGEAKSpaepkspAEAKSPAEVKSPAEAKSPAEVKSPG---EAKSPAAVKSPAEAK- 732
Cdd:PRK10263  550 AAV-PPVEA-AAAVSPLASGVKKATLATG-------AAATVAAPVFSLANSGGPRPQVKEGigpQLPRPKRIRVPTRREl 620

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   733 SPAAVKSP----GEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAK 808
Cdd:PRK10263  621 ASYGIKLPsqraAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELA 700

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   809 SPEKAKSPVKEGAKPPEKAKPL---DVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEE 885
Cdd:PRK10263  701 RQFAQTQQQRYSGEQPAGANPFsldDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQ 780

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 94730399   886 VKSPVKEEVKAKEPPKKVEEEKTLPTPKTEAKESKKDEAPKE--APKPKVEEKKETPTEKPKDS 947
Cdd:PRK10263  781 PQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQpvAPQPQYQQPQQPVAPQPQDT 844

PRK07994

DNA polymerase III subunits gamma and tau; Validated

595-760

1.47e-04

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 46.01 E-value: 1.47e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   595 SPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAkSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSP 674
Cdd:PRK07994  365 LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPAS-APQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEP 443

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   675 AEVKSPGEAKSPAEPKSpaeakSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKsPAAVKSPGEAKSPGE--AKSP 752
Cdd:PRK07994  444 AAASRARPVNSALERLA-----SVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVAT-PKALKKALEHEKTPElaAKLA 517


                  ....*...
gi 94730399   753 AEAKSPAE 760
Cdd:PRK07994  518 AEAIERDP 525

Smc

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...

111-408

1.58e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 1.58e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  111 DKVRQLEAHNRSLEGEAAALRQQQAGRAamgelyEREVREMRGAVLRLGAARGQLRLEQEhLLEDIAHVRQRLDEEarqr 190
Cdd:COG1196  193 DILGELERQLEPLERQAEKAERYRELKE------ELKELEAELLLLKLRELEAELEELEA-ELEELEAELEELEAE---- 261

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  191 eeaeaaARALARFAQEAEAARVELQKKAQALQEEcgylRRHHQEEVGELLGQIQgcgaAQAQAQAEARDALKcDVTSALR 270
Cdd:COG1196  262 ------LAELEAELEELRLELEELELELEEAQAE----EYELLAELARLEQDIA----RLEERRRELEERLE-ELEEELA 326

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  271 EIRAQLEGHAVQSTLQSEEW---------FRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEALKSTKESLE 341
Cdd:COG1196  327 ELEEELEELEEELEELEEELeeaeeeleeAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  342 RQRSELEDR---HQADIASYQDAIQQLDSELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEE 408
Cdd:COG1196  407 EAEEALLERlerLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476

PRK05035

electron transport complex protein RnfC; Provisional

615-819

1.62e-04

electron transport complex protein RnfC; Provisional

Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 45.71 E-value: 1.62e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   615 AEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAE 694
Cdd:PRK05035  471 ARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAV 550

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   695 AKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAK 774
Cdd:PRK05035  551 AAAIARAKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAE 630

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 94730399   775 TPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKE 819
Cdd:PRK05035  631 QQANAEPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPEEAEDP 675

PRK11281

mechanosensitive channel MscK;

264-406

1.65e-04

mechanosensitive channel MscK;

Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.06 E-value: 1.65e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   264 DVTSALREIRAQLEGhAVQSTLQSEEwfrvRLDRLSEAAkVNTDAMRSAQEEITEYRRQLQARTTEL----EALKSTKES 339
Cdd:PRK11281   77 RQKEETEQLKQQLAQ-APAKLRQAQA----ELEALKDDN-DEETRETLSTLSLRQLESRLAQTLDQLqnaqNDLAEYNSQ 150

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 94730399   340 LERQRSELEdRHQADIASYQDAIQQLDSELRNTKWEMAAQLREYQDLLNVKMA-LDIEIAAYRKLLEG 406
Cdd:PRK11281  151 LVSLQTQPE-RAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQAlLNAQNDLQRKSLEG 217

pylS

pyrrolysine--tRNA(Pyl) ligase;

649-718

1.86e-04

pyrrolysine--tRNA(Pyl) ligase;

Pssm-ID: 236555 [Multi-domain] Cd Length: 417 Bit Score: 45.22 E-value: 1.86e-04

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   649 SPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGE 718
Cdd:PRK09537   99 SAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETLLSPKD 168

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

657-744

1.87e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 45.65 E-value: 1.87e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   657 AEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAevkSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAA 736
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPA---AAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAA 110


                  ....*...
gi 94730399   737 VKSPGEAK 744
Cdd:PRK12270  111 AAVEDEVT 118

Atrophin-1

pfam03154

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...

520-913

1.88e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.

Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 45.53 E-value: 1.88e-04

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    520 EAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAkspaepkSPATVKSPGEAKSPSea 599
Cdd:pfam03154  155 ESDSDSSAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQG-------SPATSQPPNQTQSTA-- 225

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    600 kSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAkSPAEAKSPAEAKSPAEVKS 679
Cdd:pfam03154  226 -APHTLIQQTPTLHPQRLPSPHPPLQPMTQPPPPSQVSPQPLPQPSLHGQMPPMPHSLQT-GPSHMQHPVPPQPFPLTPQ 303

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    680 PGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPgEAKSPGEAKSPAEAKSPA 759
Cdd:pfam03154  304 SSQSQVPPGPSPAAPGQSQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTPIP-QLPNPQSHKHPPHLSGPS 382

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    760 EAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAK---SPEKAKSPVKEGAKPPEKAKPLDVKSPE 836
Cdd:pfam03154  383 PFQMNSNLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQQLPPPPAQPpvlTQSQSLPPPAASHPPTSGLHQVPSQSPF 462

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 94730399    837 AQTPVQEEAkhPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKAKEPPKKVEEEKTLPTPK 913
Cdd:pfam03154  463 PQHPFVPGG--PPPITPPSGPPTSTSSAMPGIQPPSSASVSSSGPVPAAVSCPLPPVQIKEEALDEAEEPESPPPPP 537

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

610-702

2.06e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 45.65 E-value: 2.06e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   610 EAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPaevkspgeAKSPAEP 689
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA--------PPAAAAA 105

                          90
                  ....*....|...
gi 94730399   690 KSPAEAKSPAEVK 702
Cdd:PRK12270  106 AAPAAAAVEDEVT 118

pylS

pyrrolysine--tRNA(Pyl) ligase;

613-682

2.31e-04

pyrrolysine--tRNA(Pyl) ligase;

Pssm-ID: 236555 [Multi-domain] Cd Length: 417 Bit Score: 44.83 E-value: 2.31e-04

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   613 SPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGE 682
Cdd:PRK09537   99 SAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETLLSPKD 168

PRK07994

DNA polymerase III subunits gamma and tau; Validated

683-850

2.48e-04

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 45.24 E-value: 2.48e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   683 AKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAK 762
Cdd:PRK07994  362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKS 441

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   763 SPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAksPVKEDikpPAEAKSPEKAKSPVKEGAKPPE-KAKPLDVKSPEAQTPV 841
Cdd:PRK07994  442 EPAAASRARPVNSALERLASVRPAPSALEKA--PAKKE---AYRWKATNPVEVKKEPVATPKAlKKALEHEKTPELAAKL 516


                  ....*....
gi 94730399   842 QEEAKHPTD 850
Cdd:PRK07994  517 AAEAIERDP 525

PRK13108

prolipoprotein diacylglyceryl transferase; Reviewed

577-757

2.54e-04

prolipoprotein diacylglyceryl transferase; Reviewed

Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 44.97 E-value: 2.54e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   577 SPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAkSPAEAKSPAEAKSPAEAKSPAEAkSPATVKSPGEAKSPSEAKSP 656
Cdd:PRK13108  275 APKGREAPGALRGSEYVVDEALEREPAELAAAAVA-SAASAVGPVGPGEPNQPDDVAEA-VKAEVAEVTDEVAAESVVQV 352

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   657 AEAKSPAEAKSPAEAKSPAEVKSPGE--AKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSP 734
Cdd:PRK13108  353 ADRDGESTPAVEETSEADIEREQPGDlaGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDEL 432

                         170       180
                  ....*....|....*....|...
gi 94730399   735 AAVKSPGEAKSPGEAKSPAEAKS 757
Cdd:PRK13108  433 AVAGPGDDPAEPDGIRRQDDFSS 455

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

753-877

2.94e-04

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 44.71 E-value: 2.94e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   753 AEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVkediKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDV 832
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAP----AAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 94730399   833 KSPEAQTPV--QEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSE 877
Cdd:PRK14951  446 ALAPAPPAQaaPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492

PRK07994

DNA polymerase III subunits gamma and tau; Validated

532-685

2.96e-04

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 44.86 E-value: 2.96e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   532 EAKSPAEAKSPgeAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAK--SPA 609
Cdd:PRK07994  367 EPEVPPQSAAP--AASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKksEPA 444

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 94730399   610 EAKSPAEAKSPAEA-KSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKsPAEAKSPAEAKSPAEVKSPGEAKS 685
Cdd:PRK07994  445 AASRARPVNSALERlASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVAT-PKALKKALEHEKTPELAAKLAAEA 520

PHA03307

transcriptional regulator ICP4; Provisional

521-704

2.98e-04

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 45.16 E-value: 2.98e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   521 AKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSP---S 597
Cdd:PHA03307  738 RYSPRRARARASAWDITDALFSNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASrtaS 817

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   598 EAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEv 677
Cdd:PHA03307  818 KRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAP- 896

                         170       180
                  ....*....|....*....|....*..
gi 94730399   678 KSPGEAKSPAEPKSPAEAKSPAEVKSP 704
Cdd:PHA03307  897 PAGAPAPRPRPAPRVKLGPMPPGGPDP 923

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

683-762

2.98e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 45.27 E-value: 2.98e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   683 AKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAK 762
Cdd:PRK12270   39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118

PRK14954

DNA polymerase III subunits gamma and tau; Provisional

538-662

3.06e-04

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 44.93 E-value: 3.06e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   538 EAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAksPAEAKSPAEAKSPAEA 617
Cdd:PRK14954  372 ELVRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQ--PPVARSAPLPPSPQAS 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 94730399   618 KSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSP 662
Cdd:PRK14954  450 APRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQASSSDAAQTG 494

PRK05901

RNA polymerase sigma factor; Provisional

806-1033

3.38e-04

RNA polymerase sigma factor; Provisional

Pssm-ID: 235640 [Multi-domain] Cd Length: 509 Bit Score: 44.60 E-value: 3.38e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   806 EAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPvqeeakhpTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEE 885
Cdd:PRK05901    1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFITK--------EEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATES 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   886 VKSPVKEEVKAKEPPKKVEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKETPTEKPKDsTAEAKKEEAGEKKKAVAS 965
Cdd:PRK05901   73 DIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDD-DDDDDDDDLDDDDIDDDD 151

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 94730399   966 EEETpaklgVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAAPEKKDTKEEKTTESRK 1033
Cdd:PRK05901  152 DDED-----DDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKLTATADPVK 214

valS

PRK14900

valyl-tRNA synthetase; Provisional

694-821

3.53e-04

valyl-tRNA synthetase; Provisional

Pssm-ID: 237855 [Multi-domain] Cd Length: 1052 Bit Score: 44.98 E-value: 3.53e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   694 EAKSPAEVKSPAEAKSPAEVKSPGEAKSP-AAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEK 772
Cdd:PRK14900  920 NEQKPTQDGPAAEAQPAQENTVVESAEKAvAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKK 999

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 94730399   773 A---KTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSpekAKSPVKEGA 821
Cdd:PRK14900 1000 ApakKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKA---AKKPARKAA 1048

PRK07994

DNA polymerase III subunits gamma and tau; Validated

659-816

3.64e-04

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 44.47 E-value: 3.64e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   659 AKSPAEAkSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEV-KSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAV 737
Cdd:PRK07994  358 AFHPAAP-LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVpPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGAT 436

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 94730399   738 KSPgeAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVkedIKPPAEAKSPEKAKSP 816
Cdd:PRK07994  437 KAK--KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPV---ATPKALKKALEHEKTP 510

RecN

COG0497

DNA repair ATPase RecN [Replication, recombination and repair];

94-370

3.83e-04

DNA repair ATPase RecN [Replication, recombination and repair];

Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 44.30 E-value: 3.83e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   94 SEKEQLQALnDRFAGYIDKVRQL-EAHN--RSLEGEAAALRQQQAGRAAMGELYEREVREMRGAVLRLGAargQLRLEQE 170
Cdd:COG0497  139 DPDAQRELL-DAFAGLEELLEEYrEAYRawRALKKELEELRADEAERARELDLLRFQLEELEAAALQPGE---EEELEEE 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  171 H--------LLEDIAHVRQRLDeearqreeaeaaaralarfaQEAEAARVELQKKAQALQEecgylRRHHQEEVGELLGQ 242
Cdd:COG0497  215 RrrlsnaekLREALQEALEALS--------------------GGEGGALDLLGQALRALER-----LAEYDPSLAELAER 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  243 IQgcgaaqaqaqaeardalkcDVTSALREIRAQLEGHAVQSTLQSEEWFRV--RLDRLSEAA-KVNTDAmrsaqEEITEY 319
Cdd:COG0497  270 LE-------------------SALIELEEAASELRRYLDSLEFDPERLEEVeeRLALLRRLArKYGVTV-----EELLAY 325

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 94730399  320 RRQLQARTTELEALKSTKESLERQRSELEDRhqadiasYQDAIQQLdSELR 370
Cdd:COG0497  326 AEELRAELAELENSDERLEELEAELAEAEAE-------LLEAAEKL-SAAR 368

PHA03269

envelope glycoprotein C; Provisional

719-849

3.85e-04

envelope glycoprotein C; Provisional

Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 44.33 E-value: 3.85e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   719 AKSPAAVKSPaEAKSPAAVKSPGEAKSPGEAKSpaEAKSPAEAKSPIEVKSPEKAKTPvkegakSPAEAKSPEKAKSPVK 798
Cdd:PHA03269   20 ANLNTNIPIP-ELHTSAATQKPDPAPAPHQAAS--RAPDPAVAPTSAASRKPDLAQAP------TPAASEKFDPAPAPHQ 90

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 94730399   799 EDIKPPAEAKSPEKAKSPVKEGAKPPEKAKplDVKSPEAQTPVQEEAKHPT 849
Cdd:PHA03269   91 AASRAPDPAVAPQLAAAPKPDAAEAFTSAA--QAHEAPADAGTSAASKKPD 139

PHA03269

envelope glycoprotein C; Provisional

671-796

4.97e-04

envelope glycoprotein C; Provisional

Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 43.95 E-value: 4.97e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   671 AKSPAEVKSPGEAKSPAEPKS-PAEAKSPAEVKSPAEAKSPAEVKS----PGEAKSPAAVKS--PAEAKSPAAVKSPGEA 743
Cdd:PHA03269   20 ANLNTNIPIPELHTSAATQKPdPAPAPHQAASRAPDPAVAPTSAASrkpdLAQAPTPAASEKfdPAPAPHQAASRAPDPA 99

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 94730399   744 KSPGEAKSPaeAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSP 796
Cdd:PHA03269  100 VAPQLAAAP--KPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPP 150

dnaA

PRK14086

chromosomal replication initiator protein DnaA;

560-760

5.03e-04

chromosomal replication initiator protein DnaA;

Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 44.05 E-value: 5.03e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   560 PAEPKSPAEPKSPAEAKSPAEPKSPatvkSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAksPAEAKSPAEAKSPA 639
Cdd:PRK14086   87 TVDPSAGEPAPPPPHARRTSEPELP----RPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAY--PAYQQRPEPGAWPR 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   640 TVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPaevkSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEA 719
Cdd:PRK14086  161 AADDYGWQQQRLGFPPRAPYASPASYAPEQERDRE----PYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAG 236

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 94730399   720 KSPAAVKSPAEAKSPAAVKSPGEAKSPgEAKSPAEAKSPAE 760
Cdd:PRK14086  237 HVHRGGPGPPERDDAPVVPIRPSAPGP-LAAQPAPAPGPGE 276

2A1904

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...

561-772

5.11e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]

Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 44.22 E-value: 5.11e-04

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    561 AEPKSPAEpKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKS----PAEAKSPAEAKSPAEAKSPAEAKSPAEAK 636
Cdd:TIGR00927  636 AEAEHTGE-RTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESegeiPAERKGEQEGEGEIEAKEADHKGETEAEE 714

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    637 SPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSP 716
Cdd:TIGR00927  715 VEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGD 794

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 94730399    717 GEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEK 772
Cdd:TIGR00927  795 EGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEK 850

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

689-768

5.17e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 44.11 E-value: 5.17e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   689 PKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVK 768
Cdd:PRK12270   39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118

PRK07994

DNA polymerase III subunits gamma and tau; Validated

635-805

5.57e-04

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 44.09 E-value: 5.57e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   635 AKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVK 714
Cdd:PRK07994  358 AFHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   715 SPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAkSPAEAKSPIEVKSPEKAkTPvKEGAKSPAEAKSPEKAK 794
Cdd:PRK07994  438 AKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEA-YRWKATNPVEVKKEPVA-TP-KALKKALEHEKTPELAA 514

                         170
                  ....*....|.
gi 94730399   795 SPVKEDIKPPA 805
Cdd:PRK07994  515 KLAAEAIERDP 525

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

741-861

5.62e-04

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 43.93 E-value: 5.62e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   741 GEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVkedIKPPAEAKSPEKAKSPVkeg 820
Cdd:PRK14951  370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPV---AAPAAAAPAAAPAAAPA--- 443

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 94730399   821 AKPPEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPA 861
Cdd:PRK14951  444 AVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPA 484

KREPA2

cd23959

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...

503-686

5.73e-04

Pssm-ID: 467780 [Multi-domain] Cd Length: 424 Bit Score: 43.70 E-value: 5.73e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  503 AEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAeakSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPK 582
Cdd:cd23959   76 TASTVSDCYVGNANFYEVDMSDAFAMAPDESLGPF---RAARVPNPFSASSSTQRETHKTAQVAPPKAEPQTAPVTPFGQ 152

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  583 SPatvkSPGEAKSPSEAkspaeakSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSP 662
Cdd:cd23959  153 LP----MFGQHPPPAKP-------LPAAAAAQQSSASPGEVASPFASGTVSASPFATATDTAPSSGAPDGFPAEASAPSP 221

                        170       180
                 ....*....|....*....|....
gi 94730399  663 AeAKSPAEAKSPAEVKSPGEAKSP 686
Cdd:cd23959  222 F-AAPASAASFPAAPVANGEAATP 244

pylS

pyrrolysine--tRNA(Pyl) ligase;

577-655

6.09e-04

pyrrolysine--tRNA(Pyl) ligase;

Pssm-ID: 236555 [Multi-domain] Cd Length: 417 Bit Score: 43.68 E-value: 6.09e-04

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 94730399   577 SPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKS 655
Cdd:PRK09537   99 SAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETLLSPKDKISLNSEKP 177

COG4913

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];

146-371

6.10e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];

Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 6.10e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  146 REVREMRGAVLRlgaARgqlrlEQEHLLEDI-----AHVRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQA 220
Cdd:COG4913  235 DDLERAHEALED---AR-----EQIELLEPIrelaeRYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELAR 306

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  221 LQEECGYLRRHH---QEEVGELLGQIQGCGaaqaqaqaeardalkcdvTSALREIRAQLEGHAVQSTLQSEEwfRVRLDR 297
Cdd:COG4913  307 LEAELERLEARLdalREELDELEAQIRGNG------------------GDRLEQLEREIERLERELEERERR--RARLEA 366

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 94730399  298 LSEAAKVNTDAMRsaqEEITEYRRQLQARtteLEALKSTKESLERQRSELEDRHQADiasyQDAIQQLDSELRN 371
Cdd:COG4913  367 LLAALGLPLPASA---EEFAALRAEAAAL---LEALEEELEALEEALAEAEAALRDL----RRELRELEAEIAS 430

PHA03269

envelope glycoprotein C; Provisional

584-709

6.37e-04

envelope glycoprotein C; Provisional

Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 43.56 E-value: 6.37e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   584 PATVKSPGEAKSPSEAKS-PAEAKSPAEAKSPAEAKSPAEAKSpaEAKSPAEAKSPATVKSPGEAKSPSEAKSpaEAKSP 662
Cdd:PHA03269   23 NTNIPIPELHTSAATQKPdPAPAPHQAASRAPDPAVAPTSAAS--RKPDLAQAPTPAASEKFDPAPAPHQAAS--RAPDP 98

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 94730399   663 AEAKSPAEAKSPaevkspgeakSPAEPKSPAEAKSPAEVKSPAEAKS 709
Cdd:PHA03269   99 AVAPQLAAAPKP----------DAAEAFTSAAQAHEAPADAGTSAAS 135

PRK12323

DNA polymerase III subunit gamma/tau;

741-943

6.72e-04

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 43.71 E-value: 6.72e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   741 GEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVkediKPPAEAKSPEKAKSPVKEG 820
Cdd:PRK12323  370 GGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARR----SPAPEALAAARQASARGPG 445

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   821 AKPPEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKeeaktsekvAPKKEEVKSPVKEEVKAKEPP 900
Cdd:PRK12323  446 GAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDD---------PPPWEELPPEFASPAPAQPDA 516

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 94730399   901 KKVEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKETPTEK 943
Cdd:PRK12323  517 APAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEP 559

PRK07994

DNA polymerase III subunits gamma and tau; Validated

623-791

6.78e-04

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 43.70 E-value: 6.78e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   623 AKSPAEAkSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAkSPAEVKSPGEAKSPAEPKSPAEAKSPAEVK 702
Cdd:PRK07994  358 AFHPAAP-LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPAS-APQQAPAVPLPETTSQLLAARQQLQRAQGA 435

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   703 SPAEAKSPAevkSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPG----EAKSPAEAKSPAEAKSPIEVKSPEKAKTPvK 778
Cdd:PRK07994  436 TKAKKSEPA---AASRARPVNSALERLASVRPAPSALEKAPAKKEayrwKATNPVEVKKEPVATPKALKKALEHEKTP-E 511

                         170
                  ....*....|...
gi 94730399   779 EGAKSPAEAKSPE 791
Cdd:PRK07994  512 LAAKLAAEAIERD 524

PRK07764

DNA polymerase III subunits gamma and tau; Validated

592-725

6.88e-04

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.82 E-value: 6.88e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   592 EAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAkspAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAkSPAEA 671
Cdd:PRK07764  382 ERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAA---AAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGG-APSPP 457

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 94730399   672 KSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAV 725
Cdd:PRK07764  458 PAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511

PHA03381

tegument protein VP22; Provisional

502-662

7.26e-04

tegument protein VP22; Provisional

Pssm-ID: 177618 [Multi-domain] Cd Length: 290 Bit Score: 42.69 E-value: 7.26e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   502 PAEEAASPEKETKSRVKEEAKSP-GEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAE 580
Cdd:PHA03381   25 FISPDASPARVSFEEPADRARRGaGQARGRSQAERRFHHYDEARADYPYYTGSSSEDERPADPRPSRRPHAQPEASGPGP 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   581 PKSPATVKSPGEAKSPSEAKSPAEAKSPAEAkSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAK 660
Cdd:PHA03381  105 ARGARGPAGSRGRGRRAESPSPRDPPNPKGA-SAPRGRKSACADSAALLDAPAPAAPKRQKTPAGLARKLHFSTAPTSPT 183


                  ..
gi 94730399   661 SP 662
Cdd:PHA03381  184 AP 185

rne

ribonuclease E; Reviewed

554-737

7.50e-04

ribonuclease E; Reviewed

Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 43.87 E-value: 7.50e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   554 PGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPA-EAKSPAEAKSPAEAKSPAEAKSPAEAKSP 632
Cdd:PRK10811  850 PQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVvVAEPQPEEVVVVETTHPEVIAAPVTEQPQ 929

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   633 --AEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSP 710
Cdd:PRK10811  930 viTESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEA 1009

                         170       180
                  ....*....|....*....|....*..
gi 94730399   711 AEVKSpgEAKSPAAvKSPAEAKSPAAV 737
Cdd:PRK10811 1010 TVEHN--HATAPMT-RAPAPEYVPEAP 1033

PRK13808

adenylate kinase; Provisional

555-684

7.55e-04

adenylate kinase; Provisional

Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 42.95 E-value: 7.55e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   555 GEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAE--AKSP 632
Cdd:PRK13808  195 GAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKkaAKKA 274

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 94730399   633 AEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAK 684
Cdd:PRK13808  275 AKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAK 326

PHA03269

envelope glycoprotein C; Provisional

583-685

8.74e-04

envelope glycoprotein C; Provisional

Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 43.18 E-value: 8.74e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   583 SPATVKSPGEAKSPSEAKSpaEAKSPAEAKSPAEAKSPAEAKSPAEAKS----PAEAKSPATVKSPGEAKSPSEAKSPae 658
Cdd:PHA03269   33 TSAATQKPDPAPAPHQAAS--RAPDPAVAPTSAASRKPDLAQAPTPAASekfdPAPAPHQAASRAPDPAVAPQLAAAP-- 108

                          90       100
                  ....*....|....*....|....*..
gi 94730399   659 AKSPAEAKSPAEAKSPAEVKSPGEAKS 685
Cdd:PHA03269  109 KPDAAEAFTSAAQAHEAPADAGTSAAS 135

PHA03307

transcriptional regulator ICP4; Provisional

502-650

8.79e-04

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 43.62 E-value: 8.79e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   502 PAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPkSPAEPKSPAEAKSPAEP 581
Cdd:PHA03307  777 PAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARP-PGAAARPPPARSSESSK 855

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 94730399   582 KSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAeAKSPAEAKSPAEAKSPATVKSPGEAKSP 650
Cdd:PHA03307  856 SKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAA-PPAGAPAPRPRPAPRVKLGPMPPGGPDP 923

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

669-756

8.81e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 43.73 E-value: 8.81e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   669 AEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAevkSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGE 748
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPA---AAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAA 110


                  ....*...
gi 94730399   749 AKSPAEAK 756
Cdd:PRK12270  111 AAVEDEVT 118

PHA03307

transcriptional regulator ICP4; Provisional

520-722

9.40e-04

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 43.62 E-value: 9.40e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   520 EAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSpatvKSPGEAKSPSEA 599
Cdd:PHA03307  731 RTVAPLVRYSPRRARARASAWDITDALFSNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEA----AFRRPGRLRRSG 806

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   600 KSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPaeaksPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKS 679
Cdd:PHA03307  807 PAADAASRTASKRKSRSHTPDGGSESSGPARPP-----GAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRA 881

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 94730399   680 PGEAKSPAePKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSP 722
Cdd:PHA03307  882 RPGAAAPP-KAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDP 923

tolA

cell envelope integrity inner membrane protein TolA; Provisional

646-794

9.44e-04

cell envelope integrity inner membrane protein TolA; Provisional

Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 42.87 E-value: 9.44e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   646 EAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKspAEVKSPAEAKSPAEVKSPGEAKSPAAV 725
Cdd:PRK09510  116 QKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAE--AKKKAEAEAAKKAAAEAKKKAEAEAAA 193

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 94730399   726 KSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAeakspievkspEKAKTPVKEGAKSPAEAKSPEKAK 794
Cdd:PRK09510  194 KAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAA-----------AKAAAEAKAAAEKAAAAKAAEKAA 251

rne

ribonuclease E; Reviewed

641-816

9.84e-04

ribonuclease E; Reviewed

Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 43.49 E-value: 9.84e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   641 VKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAK 720
Cdd:PRK10811  847 VVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTE 926

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   721 SPAAVkspAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKED 800
Cdd:PRK10811  927 QPQVI---TESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAP 1003

                         170
                  ....*....|....*.
gi 94730399   801 IKPPAEAKSPEKAKSP 816
Cdd:PRK10811 1004 AQVPEATVEHNHATAP 1019

PspC_subgroup_1

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...

511-776

1.11e-03

Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 43.08 E-value: 1.11e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   511 KETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPaePKSPAEPKSPAEakSPAEPKSPATVKSP 590
Cdd:NF033838  227 KTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKRGVLGEPATP--DKKENDAKSSDS--SVGEETLPSPSLKP 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   591 GEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAE---AKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKS 667
Cdd:NF033838  303 EKKVAEAEKKVEEAKKKAKDQKEEDRRNYPTNTYKTLEleiAESDVKVKEAELELVKEEAKEPRNEEKIKQAKAKVESKK 382

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   668 pAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEvkSPAEAKSPAevksPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPG 747
Cdd:NF033838  383 -AEATRLEKIKTDRKKAEEEAKRKAAEEDKVKE--KPAEQPQPA----PAPQPEKPAPKPEKPAEQPKAEKPADQQAEED 455

                         250       260
                  ....*....|....*....|....*....
gi 94730399   748 EAKSPAEAKSPAEAKSPIEVKSPEKAKTP 776
Cdd:NF033838  456 YARRSEEEYNRLTQQQPPKTEKPAQPSTP 484

PRK12472

hypothetical protein; Provisional

553-720

1.13e-03

hypothetical protein; Provisional

Pssm-ID: 237110 [Multi-domain] Cd Length: 508 Bit Score: 42.94 E-value: 1.13e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   553 SPGEAkSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAkspseAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSP 632
Cdd:PRK12472  163 SPNDA-APVDISHPALFVPKAEALAAAPARAETLAREAEDA-----ARAADEAKTAAAAAAREAAPLKASLRKLERAKAR 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   633 AEAKSPATVKSPGEAKSpSEAKSPAEAKSPAEAKSPAEAKSPAEVkspgeAKSPAEPKSPAEAKSPAEVKSpAEAKSPAE 712
Cdd:PRK12472  237 ADAELKRADKALAAAKT-DEAKARAEERQQKAAQQAAEAATQLDT-----AKADAEAKRAAAAATKEAAKA-AAAKKAET 309


                  ....*...
gi 94730399   713 VKSPGEAK 720
Cdd:PRK12472  310 AKAATDAK 317

PRK08691

DNA polymerase III subunits gamma and tau; Validated

550-766

1.16e-03

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 43.16 E-value: 1.16e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   550 EAKSPgEAKSPAEPKSPAEPKSPAEAKSPAEPkspatVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAeA 629
Cdd:PRK08691  376 ELQSP-SAQTAEKETAAKKPQPRPEAETAQTP-----VQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAA-G 448

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   630 KSPAEAKSPATVkspgeakspseakspAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKS 709
Cdd:PRK08691  449 TAQTSAKSIQTA---------------SEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPNDEAVETETFAHEAP 513

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 94730399   710 PAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIE 766
Cdd:PRK08691  514 AEPFYGYGFPDNDCPPEDGAEIPPPDWEHAAPADTAGGGADEEAEAGGIGGNNTPSA 570

PRK12373

NADH-quinone oxidoreductase subunit E;

531-648

1.17e-03

NADH-quinone oxidoreductase subunit E;

Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 42.48 E-value: 1.17e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   531 GEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSP--AEPKSPATVKSPGEAKSPSEAKSPAEAKSP 608
Cdd:PRK12373  202 GKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPksADAETNAALKTPATAPKAAAKNAKAPEAQP 281

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 94730399   609 AEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAK 648
Cdd:PRK12373  282 VSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARPGG 321

PRK12373

NADH-quinone oxidoreductase subunit E;

653-774

1.20e-03

NADH-quinone oxidoreductase subunit E;

Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 42.48 E-value: 1.20e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   653 AKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAevksPAEAKSPAEVKSPGEAKSPAAVKSPAEAK 732
Cdd:PRK12373  204 ARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPK----SADAETNAALKTPATAPKAAAKNAKAPEA 279

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 94730399   733 SPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAK 774
Cdd:PRK12373  280 QPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARPGG 321

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

519-600

1.23e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 42.96 E-value: 1.23e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   519 EEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPK---SPAEAKSPAEPKSPATVKSPGEAKS 595
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKpaaAAAAAAAPAAPPAAAAAAAPAAAAV 113


                  ....*
gi 94730399   596 PSEAK 600
Cdd:PRK12270  114 EDEVT 118

PLN03209

translocon at the inner envelope of chloroplast subunit 62; Provisional

508-737

1.26e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional

Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 42.61 E-value: 1.26e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   508 SPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAK----SPAEPKSPAEPKSPAEAKSPAEPKS 583
Cdd:PLN03209  314 TPMEELLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKavvpRPLSPYTAYEDLKPPTSPIPTPPSS 393

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   584 -PATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPgeakSPSEAKSPAEAKSP 662
Cdd:PLN03209  394 sPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSP----TAPTGVSPSVSSTS 469

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 94730399   663 AEAKSPAEAksPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAV 737
Cdd:PLN03209  470 SVPAVPDTA--PATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALA 542

PRK13808

adenylate kinase; Provisional

694-828

1.28e-03

adenylate kinase; Provisional

Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 42.18 E-value: 1.28e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   694 EAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKA 773
Cdd:PRK13808  196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAA 275

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 94730399   774 KTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAK 828
Cdd:PRK13808  276 KAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKKVTK 330

PRK14954

DNA polymerase III subunits gamma and tau; Provisional

610-734

1.29e-03

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 42.62 E-value: 1.29e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   610 EAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAksPAEVKSPGEAKSPAEP 689
Cdd:PRK14954  372 ELVRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQ--PPVARSAPLPPSPQAS 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 94730399   690 KSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSP 734
Cdd:PRK14954  450 APRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQASSSDAAQTG 494

tolA

cell envelope integrity inner membrane protein TolA; Provisional

470-653

1.46e-03

cell envelope integrity inner membrane protein TolA; Provisional

Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 42.10 E-value: 1.46e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   470 EEEDKEAQGQEGEEAEEGEEKEEEEGAAATSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPG 549
Cdd:PRK09510   84 KEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKA 163

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   550 EAKSPGEAKSPAEPKSPAEPKSPAEAKspaepkspATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAeAKSPAEA 629
Cdd:PRK09510  164 AAEAKKKAEAEAAKKAAAEAKKKAEAE--------AAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAA-AKAAAEA 234

                         170       180
                  ....*....|....*....|....
gi 94730399   630 KSPAEAKSPATVKSPGEAKSPSEA 653
Cdd:PRK09510  235 KAAAEKAAAAKAAEKAAAAKAAAE 258

PRK07735

NADH-quinone oxidoreductase subunit C;

470-689

1.58e-03

NADH-quinone oxidoreductase subunit C;

Pssm-ID: 236081 [Multi-domain] Cd Length: 430 Bit Score: 42.27 E-value: 1.58e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   470 EEEDKEAQGQEGEEAEEGEEKEEEEGAAATSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPG 549
Cdd:PRK07735   38 EEENREKEKALPKNDDMTIEEAKRRAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTE 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   550 EAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAK--------------SPA 615
Cdd:PRK07735  118 EVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALakqkaaeagegteeVTE 197

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 94730399   616 EAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEP 689
Cdd:PRK07735  198 EEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIAAAKAKAAAAARAKTKGAEGKKEEEPKQEEP 271

PTZ00441

sporozoite surface protein 2 (SSP2); Provisional

758-948

1.75e-03

sporozoite surface protein 2 (SSP2); Provisional

Pssm-ID: 240420 [Multi-domain] Cd Length: 576 Bit Score: 42.26 E-value: 1.75e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   758 PAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKakSPVkedikPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEA 837
Cdd:PTZ00441  323 PDNPQDPVPPPNEGKDGNPNEENLFPPGDDEVPDE--SNV-----PPNPPNVPGGSNSEFSSDVENPPNPPNPDIPEQEP 395

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   838 QTPVQEEAKHPTDIrpPEQVKSPAKEKAKSPEKEEAK---TSEKVAPKKEEVKSPVKEEVKAKEPPKKVEEEKTLPTPKT 914
Cdd:PTZ00441  396 NIPEDSNKEVPEDV--PMEPEDDRDNNFNEPKKPENKgdgQNEPVIPKPLDNERDQSNKNKQVNPGNRHNSEDRYTRPHG 473

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 94730399   915 EAKESK-KDEAPKEAPKPKVEEKKETPTEKPKDST 948
Cdd:PTZ00441  474 RNNENRnYNNKNSDIPKHPERSEHEQPEDKKKKSS 508

PRK10263

DNA translocase FtsK; Provisional

499-814

1.75e-03

DNA translocase FtsK; Provisional

Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 42.76 E-value: 1.75e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   499 TSPPAEEAASpeketkSRVKEEAKSPGEAKSPgeakSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSP 578
Cdd:PRK10263  317 TEPVAVAAAA------TTATQSWAAPVEPVTQ----TPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQY 386

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   579 AEPKSPAT------VKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSE 652
Cdd:PRK10263  387 AQPAVQYNeplqqpVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQ 466

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   653 AKSPAEAKSPAEAKSPAEAKSPAEVKSPG-EAKSPAEPK----SPAEAKSPAEVKS--------PAEAKSPAEVKSPGEA 719
Cdd:PRK10263  467 TYQQPAAQEPLYQQPQPVEQQPVVEPEPVvEETKPARPPlyyfEEVEEKRAREREQlaawyqpiPEPVKEPEPIKSSLKA 546

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   720 KSPAAVkSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEkaktpVKEGAKspAEAKSPEKAKSPVKE 799
Cdd:PRK10263  547 PSVAAV-PPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQ-----VKEGIG--PQLPRPKRIRVPTRR 618

                         330       340
                  ....*....|....*....|
gi 94730399   800 D-----IKPPAEAKSPEKAK 814
Cdd:PRK10263  619 ElasygIKLPSQRAAEEKAR 638

PRK12472

hypothetical protein; Provisional

571-736

1.77e-03

hypothetical protein; Provisional

Pssm-ID: 237110 [Multi-domain] Cd Length: 508 Bit Score: 42.17 E-value: 1.77e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   571 SPAEAkSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEakspaEAKSPAEAKSPAEAKSPATVKSPGEAKSP 650
Cdd:PRK12472  163 SPNDA-APVDISHPALFVPKAEALAAAPARAETLAREAEDAARAAD-----EAKTAAAAAAREAAPLKASLRKLERAKAR 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   651 SEAKSPAEAKSPAEAKSPaEAKSPAEvkspgEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAE 730
Cdd:PRK12472  237 ADAELKRADKALAAAKTD-EAKARAE-----ERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAKAAAAKKAETA 310


                  ....*.
gi 94730399   731 AKSPAA 736
Cdd:PRK12472  311 KAATDA 316

PRK13808

adenylate kinase; Provisional

591-716

1.78e-03

adenylate kinase; Provisional

Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 41.80 E-value: 1.78e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   591 GEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSpAEAKSPAE 670
Cdd:PRK13808  195 GAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAK-AVKKAAKK 273

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 94730399   671 AKSPAEVKSPGEAKSPaepKSPAEAKSPAEVKSPAEAKSPAEVKSP 716
Cdd:PRK13808  274 AAKAAAKAAKGAAKAT---KGKAKAKKKAGKKAAAGSKAKATAKAP 316

PHA03307

transcriptional regulator ICP4; Provisional

608-825

1.88e-03

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 42.47 E-value: 1.88e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   608 PAEAKSPAEAKSPAEAKS-PAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSP 686
Cdd:PHA03307  710 LPVAGGREERVAAVRAVSlVARTVAPLVRYSPRRARARASAWDITDALFSNPSLVPAKLAEALALLEPAEPQRGAGSSPP 789

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   687 AEPKSPAEAKSPAEVKSPAE--AKSPAEVKSPGEAKSPAAVKSPAEAKSP-AAVKSPGEAKSPGEAKSPAEAKSPAEAKS 763
Cdd:PHA03307  790 VRAEAAFRRPGRLRRSGPAAdaASRTASKRKSRSHTPDGGSESSGPARPPgAAARPPPARSSESSKSKPAAAGGRARGKN 869

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 94730399   764 PIEVKSPEkaktpvkEGAKSPAEAKSPEKAKSPvkediKPPAEAKSPEKAKSPVKEGAKPPE 825
Cdd:PHA03307  870 GRRRPRPP-------EPRARPGAAAPPKAAAAA-----PPAGAPAPRPRPAPRVKLGPMPPG 919

Atrophin-1

pfam03154

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...

504-881

1.93e-03

Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 42.45 E-value: 1.93e-03

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    504 EEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSpaEPKSPAEAKSPAEPKS 583
Cdd:pfam03154   71 EEAPSPLKSAKRQREKGASDTEEPERATAKKSKTQEISRPNSPSEGEGESSDGRSVNDEGSS--DPKDIDQDNRSTSPSI 148

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    584 PAtvKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAkSPSEAKSPAEAKSPA 663
Cdd:pfam03154  149 PS--PQDNESDSDSSAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQG-SPATSQPPNQTQSTA 225

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    664 EAKSPAEAKS---PAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAkSPAAVKSPAEAKSPAAVKSP 740
Cdd:pfam03154  226 APHTLIQQTPtlhPQRLPSPHPPLQPMTQPPPPSQVSPQPLPQPSLHGQMPPMPHSLQT-GPSHMQHPVPPQPFPLTPQS 304

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    741 GEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPvKEGAKSPAEAKSPEKAKSPVkediKPPAEAKSPEKAKSPVKEG 820
Cdd:pfam03154  305 SQSQVPPGPSPAAPGQSQQRIHTPPSQSQLQSQQPP-REQPLPPAPLSMPHIKPPPT----TPIPQLPNPQSHKHPPHLS 379

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 94730399    821 AKPPEKAkPLDVKSPEAQTPVQEEAKH--PTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAP 881
Cdd:pfam03154  380 GPSPFQM-NSNLPPPPALKPLSSLSTHhpPSAHPPPLQLMPQSQQLPPPPAQPPVLTQSQSLP 441

PspC_subgroup_2

NF033839

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...

824-1076

1.94e-03

Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 42.06 E-value: 1.94e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   824 PEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKtsekVAPKKEEVKSPVKEEVKAKEPPKKV 903
Cdd:NF033839  281 QDTPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPE----VKPQPEKPKPEVKPQLETPKPEVKP 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   904 EEEKTLPTPKTEAkESKKDEAPKEAPKPKVEEKKETPTEKPKDSTAEAKKEEAGEKKKAVASEEETPAKLGVKEEAKPKE 983
Cdd:NF033839  357 QPEKPKPEVKPQP-EKPKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQP 435

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   984 KTETTKTEAEDTKAKePSKPTETEKPKKEEMPAAPEKKDTKEEKTTESRKPEEKPKMEAKVKEDDKSLSKEPSKPKTEKA 1063
Cdd:NF033839  436 EKPKPEVKPQPEKPK-PEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPDNSKPQADDKKPSTPNNLSKDKQPSNQAST 514

                         250
                  ....*....|...
gi 94730399  1064 EKSSSTDQKESQP 1076
Cdd:NF033839  515 NEKATNKPKKSLP 527

PTZ00449

104 kDa microneme/rhoptry antigen; Provisional

509-711

2.00e-03

104 kDa microneme/rhoptry antigen; Provisional

Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 42.37 E-value: 2.00e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   509 PEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVK 588
Cdd:PTZ00449  579 PEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPK 658

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   589 SPGEAKSPSEAK------------------------------------------SPAEAKSPAEAKSPAEAKSP------ 620
Cdd:PTZ00449  659 PPKSPKPPFDPKfkekfyddyldaaaksketkttvvldesfesilketlpetpgTPFTTPRPLPPKLPRDEEFPfepigd 738

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   621 --AEAKSPAEAKSPAEAKS------PATVKSPG----EAKSP---SEAKSPAEA----KSPAE----------------- 664
Cdd:PTZ00449  739 pdAEQPDDIEFFTPPEEERtffhetPADTPLPDilaeEFKEEdihAETGEPDEAmkrpDSPSEhedkppgdhpslpkkrh 818

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   665 --------------------------------AKS-----------------------------------PAEAKSPAEV 677
Cdd:PTZ00449  819 rldglalsttdlesdagriakdasgkivklkrSKSfddlttveeaeemgaearkivvdddgteaddedthPPEEKHKSEV 898

                         330       340       350
                  ....*....|....*....|....*....|....
gi 94730399   678 KSPGEAKSPAEPKSPAEAKSPaevKSPAEAKSPA 711
Cdd:PTZ00449  899 RRRRPPKKPSKPKKPSKPKKP---KKPDSAFIPS 929

PLN03237

DNA topoisomerase 2; Provisional

730-1048

2.03e-03

DNA topoisomerase 2; Provisional

Pssm-ID: 215641 [Multi-domain] Cd Length: 1465 Bit Score: 42.54 E-value: 2.03e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   730 EAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEaKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKS 809
Cdd:PLN03237 1172 DAKAEEAREKLQRAAARGESGAAKKVSRQAP-KKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKGRAGAKKKA 1250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   810 PEKAKspvkegaKPPEKAKPLDVKSPEAQTPVQeeakhptdirppeqvKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSP 889
Cdd:PLN03237 1251 PAAAK-------EKEEEDEILDLKDRLAAYNLD---------------SAPAQSAKMEETVKAVPARRAAARKKPLASVS 1308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   890 VKEEVKAKEPPKKVEEEktlPTPKTEAKESKKDEA--PKEAPKPKVEEKKETPTEKPkdsTAEAKKEEAGEKKKAVASEE 967
Cdd:PLN03237 1309 VISDSDDDDDDFAVEVS---LAERLKKKGGRKPAAanKKAAKPPAAAKKRGPATVQS---GQKLLTEMLKPAEAIGISPE 1382

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   968 ETPAKLGVKEEAKPKEKTETTKTEAEDTKAKEPSKPTETEKPKKEEMPAAPEKKDTKEEKTTESRKPEEKPKMEAKVKED 1047
Cdd:PLN03237 1383 KKVRKMRASPFNKKSGSVLGRAATNKETESSENVSGSSSSEKDEIDVSAKPRPQRANRKQTTYVLSDSESESADDSDFDD 1462


                  .
gi 94730399  1048 D 1048
Cdd:PLN03237 1463 D 1463

PHA03378

EBNA-3B; Provisional

500-769

2.07e-03

EBNA-3B; Provisional

Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 42.36 E-value: 2.07e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   500 SPPAEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPksPAEAKSPA 579
Cdd:PHA03378  677 SPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARP--PAAAPGRA 754

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   580 EPKSPAtvksPGEAKSPSEAKSPAEAKSPAEAkSPAEAKSPAEAksPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEA 659
Cdd:PHA03378  755 RPPAAA----PGRARPPAAAPGAPTPQPPPQA-PPAPQQRPRGA--PTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQ 827

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   660 KSPAEAKSpaeAKSPAEVKSPGEAKSPAEPK-SPAEAKSPAEVKSPA---EAKSPAEVksPGEAKSPAAVKSPAEAKSPA 735
Cdd:PHA03378  828 LLTGGVKR---GRPSLKKPAALERQAAAGPTpSPGSGTSDKIVQAPVfypPVLQPIQV--MRQLGSVRAAAASTVTQAPT 902

                         250       260       270
                  ....*....|....*....|....*....|....
gi 94730399   736 avKSPGEAKSPGEAkSPAEAKSPAEAKSPIEVKS 769
Cdd:PHA03378  903 --EYTGERRGVGPM-HPTDIPPSKRAKTDAYVES 933

PRK12373

NADH-quinone oxidoreductase subunit E;

567-684

2.09e-03

NADH-quinone oxidoreductase subunit E;

Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 41.71 E-value: 2.09e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   567 AEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAK--SPAEAKSP--AEAKSPAEAKSPAEAKSPAEAKSPATVK 642
Cdd:PRK12373  200 EAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAApvPPSEAARPksADAETNAALKTPATAPKAAAKNAKAPEA 279

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 94730399   643 SPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAK 684
Cdd:PRK12373  280 QPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARPGG 321

pylS

pyrrolysine--tRNA(Pyl) ligase;

655-723

2.18e-03

pyrrolysine--tRNA(Pyl) ligase;

Pssm-ID: 236555 [Multi-domain] Cd Length: 417 Bit Score: 41.75 E-value: 2.18e-03

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 94730399   655 SPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPA 723
Cdd:PRK09537   99 SAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETLLSPK 167

PHA03247

large tegument protein UL36; Provisional

521-746

2.19e-03

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 42.23 E-value: 2.19e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   521 AKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSP-----GEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKS 595
Cdd:PHA03247  260 VVGEGADRAPETARGATGPPPPPEAAAPNGAAAPpdgvwGAALAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSP 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   596 PSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPaeAKSPA 675
Cdd:PHA03247  340 LPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVP--ASVPT 417

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 94730399   676 EVKSPGEAKSPAEPKSPAEAKSPAEVKSPAeaksPAEVKSPGEAKSPAAVKSPAEAkSPAAVKSPGEAKSP 746
Cdd:PHA03247  418 PAPTPVPASAPPPPATPLPSAEPGSDDGPA----PPPERQPPAPATEPAPDDPDDA-TRKALDALRERRPP 483

rne

ribonuclease E; Reviewed

548-711

2.20e-03

ribonuclease E; Reviewed

Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 42.33 E-value: 2.20e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   548 PGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPS-EAKSPAEAKSPAEAKSPAEAKSPAEAKSP 626
Cdd:PRK10811  850 PQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVvVAEPQPEEVVVVETTHPEVIAAPVTEQPQ 929

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   627 --AEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSP 704
Cdd:PRK10811  930 viTESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEA 1009


                  ....*..
gi 94730399   705 AEAKSPA 711
Cdd:PRK10811 1010 TVEHNHA 1016

pylS

pyrrolysine--tRNA(Pyl) ligase;

595-673

2.30e-03

pyrrolysine--tRNA(Pyl) ligase;

Pssm-ID: 236555 [Multi-domain] Cd Length: 417 Bit Score: 41.75 E-value: 2.30e-03

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 94730399   595 SPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKS 673
Cdd:PRK09537   99 SAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETLLSPKDKISLNSEKP 177

PHA03378

EBNA-3B; Provisional

604-1021

2.41e-03

EBNA-3B; Provisional

Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 41.98 E-value: 2.41e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   604 EAKSPAEAKSPAEAKSPAEAKSPAEAKsPAEAKSPATVKS--PGEAKSPSEAKSPAEAKSPAEAKS-PAEAKSPAEVKSP 680
Cdd:PHA03378  549 ESDEPASTEPVHDQLLPAPGLGPLQIQ-PLTSPTTSQLASsaPSYAQTPWPVPHPSQTPEPPTTQShIPETSAPRQWPMP 627

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   681 GEAKSPAEPKSPAEAKSPAEVKSPAEakSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAE 760
Cdd:PHA03378  628 LRPIPMRPLRMQPITFNVLVFPTPHQ--PPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMR 705

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   761 --AKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLdvKSPEA- 837
Cdd:PHA03378  706 ppAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQ--PPPQAp 783

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   838 QTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAktsekvaPKKEEVKSPVKEEVKAKEPPKKveeektlptpKTEAK 917
Cdd:PHA03378  784 PAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQG-------PTKQILRQLLTGGVKRGRPSLK----------KPAAL 846

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   918 ESKKDEAPKEAPKPKVEEKK-ETPTEKPKDSTAEakkeeagekkkavaseeETPAKLGVKEEAKPKEKTETTKTEAEDTK 996
Cdd:PHA03378  847 ERQAAAGPTPSPGSGTSDKIvQAPVFYPPVLQPI-----------------QVMRQLGSVRAAAASTVTQAPTEYTGERR 909

                         410       420
                  ....*....|....*....|....*
gi 94730399   997 AKEPSKPTETEKPKKEEMPAAPEKK 1021
Cdd:PHA03378  910 GVGPMHPTDIPPSKRAKTDAYVESQ 934

DUF1388

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...

530-557

2.42e-03

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 residues in length. Members of this family are found in the variable surface lipoproteins in Mycoplasma bovis and in mammalian neurofilament triplet H (NefH or NF-H) proteins. This repeat contains several Lys-Ser-Pro (KSP) motifs and in NefH these are thought to function as the main target for neurofilament directed protein kinases in vivo.

Pssm-ID: 429314 [Multi-domain] Cd Length: 28 Bit Score: 36.46 E-value: 2.42e-03

                           10        20
                   ....*....|....*....|....*...
gi 94730399    530 PGEAKSPAEAKSPGEAKSPGEAKSPGEA 557
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28

Herpes_BLLF1

pfam05109

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...

523-884

2.43e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.

Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 42.21 E-value: 2.43e-03

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    523 SPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSP-AEPKSPATVKSPGEAKSPSEAK- 600
Cdd:pfam05109  463 STGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPnATSPTPAVTTPTPNATSPTLGKt 542

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    601 SPAEAKSP----AEAKSPAEAKSPAEAKSPAEAK-SPAEAKSPAT--VKSPGEAKSPSEAKSP-----AEAKSPAEAKSP 668
Cdd:pfam05109  543 SPTSAVTTptpnATSPTPAVTTPTPNATIPTLGKtSPTSAVTTPTpnATSPTVGETSPQANTTnhtlgGTSSTPVVTSPP 622

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    669 AEAKSPA-----EVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPgeA 743
Cdd:pfam05109  623 KNATSAVttgqhNITSSSTSSMSLRPSSISETLSPSTSDNSTSHMPLLTSAHPTGGENITQVTPASTSTHHVSTSSP--A 700

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    744 KSPGEAKSPAEAKSPAEAKSPIEVKSPEkaKTPVKEgAKSPaeaKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKp 823
Cdd:pfam05109  701 PRPGTTSQASGPGNSSTSTKPGEVNVTK--GTPPKN-ATSP---QAPSGQKTAVPTVTSTGGKANSTTGGKHTTGHGAR- 773

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 94730399    824 pEKAKPLDVKSPEAQTPvQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKE 884
Cdd:pfam05109  774 -TSTEPTTDYGGDSTTP-RTRYNATTYLPPSTSSKLRPRWTFTSPPVTTAQATVPVPPTSQ 832

PRK13808

adenylate kinase; Provisional

538-673

2.46e-03

adenylate kinase; Provisional

Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 41.41 E-value: 2.46e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   538 EAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAE--AKSPA 615
Cdd:PRK13808  196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKkaAKKAA 275

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 94730399   616 EAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKS 673
Cdd:PRK13808  276 KAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKKVTKKRA 333

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

687-786

2.54e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 42.18 E-value: 2.54e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   687 AEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAeAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPie 766
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPA-AAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAA-- 110

                          90       100
                  ....*....|....*....|
gi 94730399   767 vKSPEKAKTPVKEGAKSPAE 786
Cdd:PRK12270  111 -AAVEDEVTPLRGAAAAVAK 129

DUF1388

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...

602-629

2.54e-03

Pssm-ID: 429314 [Multi-domain] Cd Length: 28 Bit Score: 36.46 E-value: 2.54e-03

                           10        20
                   ....*....|....*....|....*...
gi 94730399    602 PAEAKSPAEAKSPAEAKSPAEAKSPAEA 629
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28

DUF1388

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...

608-635

2.54e-03

Pssm-ID: 429314 [Multi-domain] Cd Length: 28 Bit Score: 36.46 E-value: 2.54e-03

                           10        20
                   ....*....|....*....|....*...
gi 94730399    608 PAEAKSPAEAKSPAEAKSPAEAKSPAEA 635
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28

PRK08691

DNA polymerase III subunits gamma and tau; Validated

499-700

2.59e-03

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 42.00 E-value: 2.59e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   499 TSPPAEEAASPEKETKSrvKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPaepkSPAEAKSP 578
Cdd:PRK08691  375 TELQSPSAQTAEKETAA--KKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAP----DEAQTAAG 448

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   579 AEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSP-AEAKSPAEAKSpAEAKSPAEAKSPATVKSPGEAKSPSEAKSPA 657
Cdd:PRK08691  449 TAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPlSEVPSENPIQA-TPNDEAVETETFAHEAPAEPFYGYGFPDNDC 527

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 94730399   658 EAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAE 700
Cdd:PRK08691  528 PPEDGAEIPPPDWEHAAPADTAGGGADEEAEAGGIGGNNTPSA 570

PHA03381

tegument protein VP22; Provisional

562-701

2.71e-03

tegument protein VP22; Provisional

Pssm-ID: 177618 [Multi-domain] Cd Length: 290 Bit Score: 41.15 E-value: 2.71e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   562 EPKSPAEPKSPAEAKSPAE----PKSPATVKSPGEAK----SPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPA 633
Cdd:PHA03381   24 DFISPDASPARVSFEEPADrarrGAGQARGRSQAERRfhhyDEARADYPYYTGSSSEDERPADPRPSRRPHAQPEASGPG 103

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 94730399   634 EAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAkSPAEAKSPAEVKSPGEAKSPAePKSPAEAKSPAEV 701
Cdd:PHA03381  104 PARGARGPAGSRGRGRRAESPSPRDPPNPKGA-SAPRGRKSACADSAALLDAPA-PAAPKRQKTPAGL 169

PRK14949

DNA polymerase III subunits gamma and tau; Provisional

499-863

2.80e-03

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 42.02 E-value: 2.80e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   499 TSPPAEEAASPEKETKSRVKEEAKSPGEAKSPGE-AKSPAEAKSPGEAKSPGEAKSPGeAKSPAEPKSPAEPKSPAEAKS 577
Cdd:PRK14949  426 AEAVAEADASAEPADTVEQALDDESELLAALNAEqAVILSQAQSQGFEASSSLDADNS-AVPEQIDSTAEQSVVNPSVTD 504

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   578 PAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSP-AEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAkSP 656
Cdd:PRK14949  505 TQVDDTSASNNSAADNTVDDNYSAEDTLESNGLDEGDyAQDSAPLDAYQDDYVAFSSESYNALSDDEQHSANVQSAQ-SA 583

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   657 AEAKSPAEAKSPAEAKSPAEVkSPGE-------------------AKSPAEPKSPaeaKSPAEVKSpaeaKSPAEVKSPG 717
Cdd:PRK14949  584 AEAQPSSQSLSPISAVTTAAA-SLADddildavlaardsllsdldALSPKEGDGK---KSSADRKP----KTPPSRAPPA 655

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   718 EAKSPAAVkSPAEAKSPAAVKSPGEAKSPGEAKSPAeakSPAEAKSPIEVKSPEKAKTPvkegaksPAEAksPEKAKSPV 797
Cdd:PRK14949  656 SLSKPASS-PDASQTSASFDLDPDFELATHQSVPEA---ALASGSAPAPPPVPDPYDRP-------PWEE--APEVASAN 722

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   798 KEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEA----KHPTDIRPPEQVKSPAKE 863
Cdd:PRK14949  723 DGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSPASTTAltqtSSEVQDTELNLVLLSSGS 792

EnvC

COG4942

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...

85-354

2.82e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.82e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   85 CVVAAVAARSEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVREMRGAVLRLGAARGQ 164
Cdd:COG4942   15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  165 LRLEQEHLLEDIAhvrQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEevgellgqiq 244
Cdd:COG4942   95 LRAELEAQKEELA---ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE---------- 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  245 gcgaaqaqaqaeardalkcdvtsaLREIRAQLEGH-AVQSTLQSEEwfRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQL 323
Cdd:COG4942  162 ------------------------LAALRAELEAErAELEALLAEL--EEERAALEALKAERQKLLARLEKELAELAAEL 215

                        250       260       270
                 ....*....|....*....|....*....|.
gi 94730399  324 QARTTELEALKSTKESLERQRSELEDRHQAD 354
Cdd:COG4942  216 AELQQEAEELEALIARLEAEAAAAAERTPAA 246

PRK12472

hypothetical protein; Provisional

523-691

2.83e-03

hypothetical protein; Provisional

Pssm-ID: 237110 [Multi-domain] Cd Length: 508 Bit Score: 41.39 E-value: 2.83e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   523 SPGEAkSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPA-EPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKS 601
Cdd:PRK12472  163 SPNDA-APVDISHPALFVPKAEALAAAPARAETLAREAEDAARAAdEAKTAAAAAAREAAPLKASLRKLERAKARADAEL 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   602 PAEAKSPAEAKSPaEAKSPAEakspaEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSpAEAKSPAEVKSPG 681
Cdd:PRK12472  242 KRADKALAAAKTD-EAKARAE-----ERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAKA-AAAKKAETAKAAT 314

                         170
                  ....*....|
gi 94730399   682 EAKSPAEPKS 691
Cdd:PRK12472  315 DAKLALEPVS 324

DUF5585

pfam17823

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

507-808

2.84e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 41.48 E-value: 2.84e-03

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    507 ASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGeAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKS---PAEPKS 583
Cdd:pfam17823  135 AALPSEAFSAPRAAACRANASAAPRAAIAAASAPHAA-SPAPRTAASSTTAASSTTAASSAPTTAASSAPAtltPARGIS 213

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    584 PATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAE-AKSPAEAKSPAEAKSPATVKSPgEAKSPSEAK---SPAEA 659
Cdd:pfam17823  214 TAATATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPAAlATLAAAAGTVASAAGTINMGDP-HARRLSPAKhmpSDTMA 292

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    660 KSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPaeakspaevKSPGEAKSPAAVKSPAEAKSPAA--V 737
Cdd:pfam17823  293 RNPAAPMGAQAQGPIIQVSTDQPVHNTAGEPTPSPSNTTLEPNTP---------KSVASTNLAVVTTTKAQAKEPSAspV 363

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 94730399    738 KSPGEAKSPG-EAKSPAEAKSP----AEAKSPIEVKSPEKAKTPVKEGAKSPA-EAKSPEKAKSPVKEDIKPPAEAK 808
Cdd:pfam17823  364 PVLHTSMIPEvEATSPTTQPSPllptQGAAGPGILLAPEQVATEATAGTASAGpTPRSSGDPKTLAMASCQLSTQGQ 440

PRK08691

DNA polymerase III subunits gamma and tau; Validated

593-825

3.05e-03

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 41.62 E-value: 3.05e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   593 AKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAksPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAK 672
Cdd:PRK08691  361 LAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPR--PEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWED 438

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   673 SPAEVKSPgeakspaEPKSPAEAKSpaeVKSPAEAKSPAEVK-SPGEAKSPAAVKSPAEAKSPAAVKSpgeakSPGEAKS 751
Cdd:PRK08691  439 APDEAQTA-------AGTAQTSAKS---IQTASEAETPPENQvSKNKAADNETDAPLSEVPSENPIQA-----TPNDEAV 503

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 94730399   752 PAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPaeaKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPE 825
Cdd:PRK08691  504 ETETFAHEAPAEPFYGYGFPDNDCPPEDGAEIP---PPDWEHAAPADTAGGGADEEAEAGGIGGNNTPSAPPPE 574

COG4913

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];

206-402

3.13e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];

Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 3.13e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  206 EAEAARVELQKKAQALQEecgyLRRHHQE--EVGELLGQIQGCGAAQAQAQAEARDALkcdVTSALREIRAQLEGHAVQS 283
Cdd:COG4913  239 RAHEALEDAREQIELLEP----IRELAERyaAARERLAELEYLRAALRLWFAQRRLEL---LEAELEELRAELARLEAEL 311

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  284 TLQSEewfrvRLDRLSEAAKVNTDAMRSAQ-EEITEYRRQLQARTTELEALKSTKESLERQRSELE----------DRHQ 352
Cdd:COG4913  312 ERLEA-----RLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALLAALGlplpasaeefAALR 386

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 94730399  353 ADIASYQDAIQQLDSELRNTKWEMAAQLREYQDLLNvkmALDIEIAAYRK 402
Cdd:COG4913  387 AEAAALLEALEEELEALEEALAEAEAALRDLRRELR---ELEAEIASLER 433

rne

ribonuclease E; Reviewed

506-698

3.17e-03

ribonuclease E; Reviewed

Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 41.56 E-value: 3.17e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   506 AASPEKET-KSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSP 584
Cdd:PRK10811  831 CASPEMASgKVWIRYPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVV 910

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   585 ATVKSPGEAKSPSEAKSPA---EAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKS 661
Cdd:PRK10811  911 VVETTHPEVIAAPVTEQPQvitESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAE 990

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 94730399   662 PAEAKSPAEAKSPAEVKSPGEAKSPAEP---KSPAEAKSP 698
Cdd:PRK10811  991 VETVTAVEPEVAPAQVPEATVEHNHATApmtRAPAPEYVP 1030

DUF1388

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...

524-551

3.28e-03

Pssm-ID: 429314 [Multi-domain] Cd Length: 28 Bit Score: 36.08 E-value: 3.28e-03

                           10        20
                   ....*....|....*....|....*...
gi 94730399    524 PGEAKSPGEAKSPAEAKSPGEAKSPGEA 551
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28

PRK13808

adenylate kinase; Provisional

573-693

3.42e-03

adenylate kinase; Provisional

Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 41.03 E-value: 3.42e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   573 AEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSE 652
Cdd:PRK13808  197 ANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAK 276

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 94730399   653 AKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPA 693
Cdd:PRK13808  277 AAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPK 317

2A1904

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...

503-714

3.44e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]

Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 41.52 E-value: 3.44e-03

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    503 AEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKS----PGEAKSPAEPKSPAEPKSPAEAKSP 578
Cdd:TIGR00927  631 SKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESegeiPAERKGEQEGEGEIEAKEADHKGET 710

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    579 AEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAE 658
Cdd:TIGR00927  711 EAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGE 790

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 94730399    659 AKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVK 714
Cdd:TIGR00927  791 MKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAK 846

PLN03237

DNA topoisomerase 2; Provisional

504-652

3.46e-03

DNA topoisomerase 2; Provisional

Pssm-ID: 215641 [Multi-domain] Cd Length: 1465 Bit Score: 41.77 E-value: 3.46e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   504 EEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKspaepKS 583
Cdd:PLN03237 1317 DDDFAVEVSLAERLKKKGGRKPAAANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKMR-----AS 1391

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   584 PATVKSPGEAKSPSEAKSpaeaKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVK-SPGEAKSPSE 652
Cdd:PLN03237 1392 PFNKKSGSVLGRAATNKE----TESSENVSGSSSSEKDEIDVSAKPRPQRANRKQTTYVlSDSESESADD 1457

PRK07994

DNA polymerase III subunits gamma and tau; Validated

728-906

3.58e-03

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 41.39 E-value: 3.58e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   728 PAEAkSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAkTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEA 807
Cdd:PRK07994  361 PAAP-LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPAS-APQQAPAVPLPETTSQLLAARQQLQRAQGATKA 438

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   808 KSPEkaksPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAkhptdirppeqvksPAKEKA---KSPEKEEAKTSEKVAPKke 884
Cdd:PRK07994  439 KKSE----PAAASRARPVNSALERLASVRPAPSALEKA--------------PAKKEAyrwKATNPVEVKKEPVATPK-- 498

                         170       180
                  ....*....|....*....|..
gi 94730399   885 EVKSPVKEEvKAKEPPKKVEEE 906
Cdd:PRK07994  499 ALKKALEHE-KTPELAAKLAAE 519

PLN03209

translocon at the inner envelope of chloroplast subunit 62; Provisional

603-846

3.61e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional

Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 41.45 E-value: 3.61e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   603 AEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKspAEAKSPAEAKSPAEVKSPGE 682
Cdd:PLN03209  307 AETTAPLTPMEELLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPK--AVVPRPLSPYTAYEDLKPPT 384

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   683 AKSPAEPKSPAEAKSPAEVkspaeAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPaeak 762
Cdd:PLN03209  385 SPIPTPPSSSPASSKSVDA-----VAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSP---- 455

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   763 spievKSPEKAKTPVKEgakSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQ 842
Cdd:PLN03209  456 -----TAPTGVSPSVSS---TSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTN 527


                  ....
gi 94730399   843 EEAK 846
Cdd:PLN03209  528 EVVK 531

DUF1388

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...

662-688

3.70e-03

Pssm-ID: 429314 [Multi-domain] Cd Length: 28 Bit Score: 35.69 E-value: 3.70e-03

                           10        20
                   ....*....|....*....|....*..
gi 94730399    662 PAEAKSPAEAKSPAEVKSPGEAKSPAE 688
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVK 27

PRK07994

DNA polymerase III subunits gamma and tau; Validated

649-816

3.99e-03

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 41.00 E-value: 3.99e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   649 SPSEAKSPAEAKSPAEAKSPAEaksPAEVKSPGEAKSPAEPKSPAEAKSPAevKSPAEAKSPAEVKSPGEAKSPAAVKSP 728
Cdd:PRK07994  365 LPEPEVPPQSAAPAASAQATAA---PTAAVAPPQAPAVPPPPASAPQQAPA--VPLPETTSQLLAARQQLQRAQGATKAK 439

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   729 AEAKSPAAVKSPGEAKSPGEAkSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEaksPEKAKSPVKEDIKPPAEAK 808
Cdd:PRK07994  440 KSEPAAASRARPVNSALERLA-SVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVAT---PKALKKALEHEKTPELAAK 515


                  ....*...
gi 94730399   809 SPEKAKSP 816
Cdd:PRK07994  516 LAAEAIER 523

valS

PRK14900

valyl-tRNA synthetase; Provisional

658-799

4.05e-03

valyl-tRNA synthetase; Provisional

Pssm-ID: 237855 [Multi-domain] Cd Length: 1052 Bit Score: 41.52 E-value: 4.05e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   658 EAKSPAEAKSPAEAKSPAEVKSPGEAKspaepkspaeaKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAV 737
Cdd:PRK14900  920 NEQKPTQDGPAAEAQPAQENTVVESAE-----------KAVAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKAAAT 988

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 94730399   738 KSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKaKTPVKEGAKSPAEAKSpekAKSPVKE 799
Cdd:PRK14900  989 RAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAK-KAPAKKVARKPAAKKA---AKKPARK 1046

PRK13108

prolipoprotein diacylglyceryl transferase; Reviewed

517-664

4.06e-03

prolipoprotein diacylglyceryl transferase; Reviewed

Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 41.12 E-value: 4.06e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   517 VKEEAKSPGEAKSPGEAKSPAEAKSPgeAKSPGEAKSPGE-AKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKS 595
Cdd:PRK13108  291 VVDEALEREPAELAAAAVASAASAVG--PVGPGEPNQPDDvAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSE 368

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 94730399   596 PS---EAKSPAEAKSPAEAKSPAEAKSPAE---AKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAE 664
Cdd:PRK13108  369 ADierEQPGDLAGQAPAAHQVDAEAASAAPeepAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPAE 443

DUF1388

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...

536-562

4.20e-03

Pssm-ID: 429314 [Multi-domain] Cd Length: 28 Bit Score: 35.69 E-value: 4.20e-03

                           10        20
                   ....*....|....*....|....*..
gi 94730399    536 PAEAKSPGEAKSPGEAKSPGEAKSPAE 562
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVK 27

DUF1388

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...

656-683

4.24e-03

Pssm-ID: 429314 [Multi-domain] Cd Length: 28 Bit Score: 35.69 E-value: 4.24e-03

                           10        20
                   ....*....|....*....|....*...
gi 94730399    656 PAEAKSPAEAKSPAEAKSPAEVKSPGEA 683
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28

DUF1388

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...

614-641

4.41e-03

Pssm-ID: 429314 [Multi-domain] Cd Length: 28 Bit Score: 35.69 E-value: 4.41e-03

                           10        20
                   ....*....|....*....|....*...
gi 94730399    614 PAEAKSPAEAKSPAEAKSPAEAKSPATV 641
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28

PRK13108

prolipoprotein diacylglyceryl transferase; Reviewed

503-619

4.46e-03

prolipoprotein diacylglyceryl transferase; Reviewed

Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 40.73 E-value: 4.46e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   503 AEEAASPEKETKSRVKEEAKSPGEAKSPgEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKS-PAEPKSPAEaksPAEP 581
Cdd:PRK13108  342 DEVAAESVVQVADRDGESTPAVEETSEA-DIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAAlASEAHDETE---PEVP 417

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 94730399   582 KSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKS 619
Cdd:PRK13108  418 EKAAPIPDPAKPDELAVAGPGDDPAEPDGIRRQDDFSS 455

PHA03247

large tegument protein UL36; Provisional

563-689

4.49e-03

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.46 E-value: 4.49e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   563 PKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVK 642
Cdd:PHA03247  361 PPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEP 440

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 94730399   643 SPGEAKSPSEAKSPAEAKSPAEAKSPAEAkSPAEVKSPGEAKSPAEP 689
Cdd:PHA03247  441 GSDDGPAPPPERQPPAPATEPAPDDPDDA-TRKALDALRERRPPEPP 486

Smc

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...

88-519

4.87e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 4.87e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   88 AAVAARSEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVREMRGAVLRLGAARGQLRL 167
Cdd:COG1196  321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  168 EQEHLLEDIAHVRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLGQIQgcg 247
Cdd:COG1196  401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA--- 477

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  248 aaQAQAQAEARDALKcDVTSALREIRAQLEG--------------HAVQSTLQSEEWFRVRLDRLSEAA------KVNTD 307
Cdd:COG1196  478 --ALAELLEELAEAA-ARLLLLLEAEADYEGflegvkaalllaglRGLAGAVAVLIGVEAAYEAALEAAlaaalqNIVVE 554

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  308 AMRSAQEEITEYRRQLQARTTELEALKSTKESLERQRSELEDRHQADIASYQDAIQQLDSELRNTKWEMAAQLREYQDLL 387
Cdd:COG1196  555 DDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEA 634

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  388 NVKMALDIEIAAYRKLLEGEECRIGFGPSPFSLTEGLPKIPSISTHIKVKSEEMIKVVEKSEKETVIVEGQTEEIRVTEG 467
Cdd:COG1196  635 ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714

                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 94730399  468 VTEEEDKEAQGQEGEEAEEGEEKEEEEGAAATSPPAEEAASPE-----KETKSRVKE 519
Cdd:COG1196  715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPeppdlEELERELER 771

PRK14950

DNA polymerase III subunits gamma and tau; Provisional

533-637

4.88e-03

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 40.95 E-value: 4.88e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   533 AKSPAEAKSPGEAKSPgEAKSPGEAksPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAK 612
Cdd:PRK14950  361 VPVPAPQPAKPTAAAP-SPVRPTPA--PSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIP 437

                          90       100
                  ....*....|....*....|....*
gi 94730399   613 SPAEAKSPAEAKSPAEAKSPAEAKS 637
Cdd:PRK14950  438 VDEKPKYTPPAPPKEEEKALIADGD 462

PspC_subgroup_1

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...

506-734

5.05e-03

Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 40.77 E-value: 5.05e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   506 AASPEKETKSRVKEEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPA 585
Cdd:NF033838  254 ATSEQDKPKRRAKRGVLGEPATPDKKENDAKSSDSSVGEETLPSPSLKPEKKVAEAEKKVEEAKKKAKDQKEEDRRNYPT 333

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   586 TVKSPGE---AKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSpAEAKSPATVKSpGEAKSPSEAKSPAEAKSP 662
Cdd:NF033838  334 NTYKTLEleiAESDVKVKEAELELVKEEAKEPRNEEKIKQAKAKVESKK-AEATRLEKIKT-DRKKAEEEAKRKAAEEDK 411

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 94730399   663 AEAKsPAEAKSPAEVKSP-GEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVK-SPGEAKSPAAVKSPAEAKSP 734
Cdd:NF033838  412 VKEK-PAEQPQPAPAPQPeKPAPKPEKPAEQPKAEKPADQQAEEDYARRSEEEyNRLTQQQPPKTEKPAQPSTP 484

PTZ00144

dihydrolipoamide succinyltransferase; Provisional

553-619

5.21e-03

dihydrolipoamide succinyltransferase; Provisional

Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 40.44 E-value: 5.21e-03

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 94730399   553 SPGEAKSPAEPKSPAEPKspAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKS 619
Cdd:PTZ00144  119 DTGGAPPAAAPAAAAAAK--AEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVA 183

PRK13108

prolipoprotein diacylglyceryl transferase; Reviewed

805-947

5.34e-03

prolipoprotein diacylglyceryl transferase; Reviewed

Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 40.73 E-value: 5.34e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   805 AEAKSPEKAKSPVKEG--AKPPEKAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQvkSPAKEKAKSPEKEEAKTSEKVAPK 882
Cdd:PRK13108  306 AAVASAASAVGPVGPGepNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGES--TPAVEETSEADIEREQPGDLAGQA 383

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 94730399   883 KEEVKSPVKEEVKAKEPPKKVEEEktlptpktEAKESKKDEAPKEAPKPKVEEKKETPTEKPKDS 947
Cdd:PRK13108  384 PAAHQVDAEAASAAPEEPAALASE--------AHDETEPEVPEKAAPIPDPAKPDELAVAGPGDD 440

pylS

pyrrolysine--tRNA(Pyl) ligase;

631-700

5.35e-03

pyrrolysine--tRNA(Pyl) ligase;

Pssm-ID: 236555 [Multi-domain] Cd Length: 417 Bit Score: 40.59 E-value: 5.35e-03

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   631 SPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAE 700
Cdd:PRK09537   99 SAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETLLSPKD 168

DUF1388

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...

590-617

5.64e-03

Pssm-ID: 429314 [Multi-domain] Cd Length: 28 Bit Score: 35.31 E-value: 5.64e-03

                           10        20
                   ....*....|....*....|....*...
gi 94730399    590 PGEAKSPSEAKSPAEAKSPAEAKSPAEA 617
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28

DUF1388

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...

644-671

5.64e-03

Pssm-ID: 429314 [Multi-domain] Cd Length: 28 Bit Score: 35.31 E-value: 5.64e-03

                           10        20
                   ....*....|....*....|....*...
gi 94730399    644 PGEAKSPSEAKSPAEAKSPAEAKSPAEA 671
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28

PTZ00341

Ring-infected erythrocyte surface antigen; Provisional

746-938

5.77e-03

Ring-infected erythrocyte surface antigen; Provisional

Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 40.93 E-value: 5.77e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   746 PGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPAEAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKppE 825
Cdd:PTZ00341  936 PEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVE--E 1013

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   826 KAKPLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKE--EAKTSEKVAPKKEEVKSPVKEEVK--AKEPPK 901
Cdd:PTZ00341 1014 NIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEEniEEYDEENVEEIEENIEENIEENVEenVEENVE 1093

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 94730399   902 KVEE--EKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKE 938
Cdd:PTZ00341 1094 EIEEnvEENVEENAEENAEENAEENAEEYDDENPEEHNE 1132

PRK13808

adenylate kinase; Provisional

645-792

5.88e-03

adenylate kinase; Provisional

Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 40.26 E-value: 5.88e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   645 GEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSpgeakspAA 724
Cdd:PRK13808  195 GAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAK-------AV 267

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 94730399   725 VKSPAEAKSPAAVKSPGEAKSpgeAKSPAEAKSPAEAKSPIEVKSPEKAKTPvKEGAKSPAEAKSPEK 792
Cdd:PRK13808  268 KKAAKKAAKAAAKAAKGAAKA---TKGKAKAKKKAGKKAAAGSKAKATAKAP-KRGAKGKKAKKVTKK 331

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

706-789

6.07e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 40.64 E-value: 6.07e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   706 EAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSPA 785
Cdd:PRK12270   34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113


                  ....
gi 94730399   786 EAKS 789
Cdd:PRK12270  114 EDEV 117

DUF1388

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...

692-719

6.10e-03

Pssm-ID: 429314 [Multi-domain] Cd Length: 28 Bit Score: 35.31 E-value: 6.10e-03

                           10        20
                   ....*....|....*....|....*...
gi 94730399    692 PAEAKSPAEVKSPAEAKSPAEVKSPGEA 719
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28

DUF1388

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...

650-677

6.10e-03

Pssm-ID: 429314 [Multi-domain] Cd Length: 28 Bit Score: 35.31 E-value: 6.10e-03

                           10        20
                   ....*....|....*....|....*...
gi 94730399    650 PSEAKSPAEAKSPAEAKSPAEAKSPAEV 677
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28

Herpes_BLLF1

pfam05109

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...

665-896

6.13e-03

Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 40.67 E-value: 6.13e-03

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    665 AKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAeakspaevkSPGEAKSPAAVKSPaeakSPAAVKSPGEAK 744
Cdd:pfam05109  422 SKAPESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPA---------STGPTVSTADVTSP----TPAGTTSGASPV 488

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    745 SPgeakSPAEAKSPAEAKSPiEVKSPEKAKTPVKEGAKSPAEAkspekAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPP 824
Cdd:pfam05109  489 TP----SPSPRDNGTESKAP-DMTSPTSAVTTPTPNATSPTPA-----VTTPTPNATSPTLGKTSPTSAVTTPTPNATSP 558

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 94730399    825 EKAkpLDVKSPEAQTPVQEEAKHPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPKKEEVKSPVKEEVKA 896
Cdd:pfam05109  559 TPA--VTTPTPNATIPTLGKTSPTSAVTTPTPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSA 628

PTZ00144

dihydrolipoamide succinyltransferase; Provisional

529-602

6.41e-03

dihydrolipoamide succinyltransferase; Provisional

Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 40.44 E-value: 6.41e-03

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 94730399   529 SPGEAKSPAEAKSPGEAKSPGEAKSPGEAKSP-AEPKSPAEPKSPAEAKSPAEPKSPATVKSPGEAKSPSEAKSP 602
Cdd:PTZ00144  119 DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPtPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRETRVP 193

DUF1388

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...

596-623

6.41e-03

Pssm-ID: 429314 [Multi-domain] Cd Length: 28 Bit Score: 35.31 E-value: 6.41e-03

                           10        20
                   ....*....|....*....|....*...
gi 94730399    596 PSEAKSPAEAKSPAEAKSPAEAKSPAEA 623
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28

DUF1388

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...

740-767

6.47e-03

Pssm-ID: 429314 [Multi-domain] Cd Length: 28 Bit Score: 35.31 E-value: 6.47e-03

                           10        20
                   ....*....|....*....|....*...
gi 94730399    740 PGEAKSPGEAKSPAEAKSPAEAKSPIEV 767
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28

PRK13808

adenylate kinase; Provisional

717-828

6.64e-03

adenylate kinase; Provisional

Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 39.87 E-value: 6.64e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   717 GEAKSPAAVKSPAEAKSP--AAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSPEKAKTPVKEGAKSP-AEAKSPEKA 793
Cdd:PRK13808  195 GAANAKKAAKTPAAKSGAkkASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAkAVKKAAKKA 274

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 94730399   794 KSPVKEDIKPPAEA-KSPEKAKSPVKEGAKPPEKAK 828
Cdd:PRK13808  275 AKAAAKAAKGAAKAtKGKAKAKKKAGKKAAAGSKAK 310

DUF4045

pfam13254

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...

552-691

6.89e-03

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.

Pssm-ID: 433066 [Multi-domain] Cd Length: 415 Bit Score: 40.15 E-value: 6.89e-03

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    552 KSPGEAKSPAEPKSPAEPKSpaEAKSPAEPKSPATV-KSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEaK 630
Cdd:pfam13254  197 PNSFKEVTPVGLMRSPAPGG--HSKSPSVSGISADSsPTKEEPSEEADTLSTDKEQSPAPTSASEPPPKTKELPKDSE-E 273

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 94730399    631 SPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKS 691
Cdd:pfam13254  274 PAAPSKSAEASTEKKEPDTESSPETSSEKSAPSLLSPVSKASIDKPLSSPDRDPLSPKPKP 334

PRK11901

hypothetical protein; Reviewed

581-645

6.97e-03

hypothetical protein; Reviewed

Pssm-ID: 237015 [Multi-domain] Cd Length: 327 Bit Score: 40.05 E-value: 6.97e-03

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 94730399   581 PKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPA--EAKSPAEAKSPAEAKSPAEAKSPATV--KSPG 645
Cdd:PRK11901  175 PTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAvnHHKTATVAVPPATSGKPKSGAASARAlsSAPA 243

PRK13808

adenylate kinase; Provisional

705-838

7.63e-03

adenylate kinase; Provisional

Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 39.87 E-value: 7.63e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   705 AEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAeaKSPAEAKSPIEVKSPEKAKTPVKEGAKSP 784
Cdd:PRK13808  197 ANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTA--AKAAKKAKKTAKKALKKAAKAVKKAAKKA 274

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 94730399   785 aeAKSPEKAKSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQ 838
Cdd:PRK13808  275 --AKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAK 326

Herpes_BLLF1

pfam05109

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...

533-948

7.71e-03

Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 40.28 E-value: 7.71e-03

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    533 AKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAeakSPAEPKSPATVKSPgeakspseakSPAEAKSPAEAK 612
Cdd:pfam05109  422 SKAPESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPA---STGPTVSTADVTSP----------TPAGTTSGASPV 488

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    613 SPaeakSPAEAKSPAEAKSPAEAKSPATVKSPG-EAKSPseakSPAEAKSPAEAKSPAEAKSpaevkSPGEAKSPAEPKs 691
Cdd:pfam05109  489 TP----SPSPRDNGTESKAPDMTSPTSAVTTPTpNATSP----TPAVTTPTPNATSPTLGKT-----SPTSAVTTPTPN- 554

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    692 pAEAKSPAeVKSPAEAkspAEVKSPGEAKSPAAVKSPA-EAKSPAAVKSPGEAKSPGEAKSpaeakspAEAKSPIEVKSP 770
Cdd:pfam05109  555 -ATSPTPA-VTTPTPN---ATIPTLGKTSPTSAVTTPTpNATSPTVGETSPQANTTNHTLG-------GTSSTPVVTSPP 622

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    771 EKAKTPVKEGAKSPAEAKSPEKAKSP--VKEDIKPPAEAKSpeKAKSPVKEGAKPPEKAKPLDVkspeaqTPVQEEAKHP 848
Cdd:pfam05109  623 KNATSAVTTGQHNITSSSTSSMSLRPssISETLSPSTSDNS--TSHMPLLTSAHPTGGENITQV------TPASTSTHHV 694

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399    849 TdirppeqvkspakekAKSPEKEEAKTSEKVAPKKEEVKS-PVKEEVKAKEPPKKVE-------EEKTLPTPKTEAKESK 920
Cdd:pfam05109  695 S---------------TSSPAPRPGTTSQASGPGNSSTSTkPGEVNVTKGTPPKNATspqapsgQKTAVPTVTSTGGKAN 759

                          410       420
                   ....*....|....*....|....*...
gi 94730399    921 KDEAPKEAPKPKVEEKKETPTEKPKDST 948
Cdd:pfam05109  760 STTGGKHTTGHGARTSTEPTTDYGGDST 787

PRK12472

hypothetical protein; Provisional

607-766

7.79e-03

hypothetical protein; Provisional

Pssm-ID: 237110 [Multi-domain] Cd Length: 508 Bit Score: 40.24 E-value: 7.79e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   607 SPAEAkSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEA-KSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKS 685
Cdd:PRK12472  163 SPNDA-APVDISHPALFVPKAEALAAAPARAETLAREAEDAaRAADEAKTAAAAAAREAAPLKASLRKLERAKARADAEL 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   686 PAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSpGEAKSPAEAKSPAEAKSPI 765
Cdd:PRK12472  242 KRADKALAAAKTDEAKARAEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAKA-AAAKKAETAKAATDAKLAL 320


                  .
gi 94730399   766 E 766
Cdd:PRK12472  321 E 321

pylS

pyrrolysine--tRNA(Pyl) ligase;

619-688

7.83e-03

pyrrolysine--tRNA(Pyl) ligase;

Pssm-ID: 236555 [Multi-domain] Cd Length: 417 Bit Score: 39.82 E-value: 7.83e-03

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   619 SPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAE 688
Cdd:PRK09537   99 SAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETLLSPKD 168

PTZ00144

dihydrolipoamide succinyltransferase; Provisional

745-830

7.88e-03

dihydrolipoamide succinyltransferase; Provisional

Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 40.05 E-value: 7.88e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   745 SPGEAKSPAEAKSPAEAKSPievkspekakTPVKEGAKSPAEAKSPEKAKSPV-KEDIKPPAEAKSPEKAKSPVKEgAKP 823
Cdd:PTZ00144  119 DTGGAPPAAAPAAAAAAKAE----------KTTPEKPKAAAPTPEPPAASKPTpPAAAKPPEPAPAAKPPPTPVAR-ADP 187


                  ....*..
gi 94730399   824 PEKAKPL 830
Cdd:PTZ00144  188 RETRVPM 194

PRK13808

adenylate kinase; Provisional

634-762

8.11e-03

adenylate kinase; Provisional

Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 39.87 E-value: 8.11e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   634 EAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAE--AKSPA 711
Cdd:PRK13808  196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKkaAKKAA 275

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 94730399   712 EVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAKSPGEAKSPAEAKSPAEAK 762
Cdd:PRK13808  276 KAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAK 326

PRK14954

DNA polymerase III subunits gamma and tau; Provisional

532-656

8.23e-03

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 40.31 E-value: 8.23e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   532 EAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSPAEPKSPAEAKSPAEPKSPATVKSPgeAKSPSEAKSPAEAKSPAEA 611
Cdd:PRK14954  372 ELVRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTP--EQQPPVARSAPLPPSPQAS 449

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 94730399   612 KSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSP 656
Cdd:PRK14954  450 APRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQASSSDAAQTG 494

PRK13808

adenylate kinase; Provisional

610-744

8.62e-03

adenylate kinase; Provisional

Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 39.49 E-value: 8.62e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399   610 EAKSPAEAKSPAEAKSPAEAKSPAEAKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEVKspgeAKSPAEP 689
Cdd:PRK13808  196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAA----KAVKKAA 271

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 94730399   690 KSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSPAAVKSPGEAK 744
Cdd:PRK13808  272 KKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAK 326

pylS

pyrrolysine--tRNA(Pyl) ligase;

571-639

8.75e-03

pyrrolysine--tRNA(Pyl) ligase;

Pssm-ID: 236555 [Multi-domain] Cd Length: 417 Bit Score: 39.82 E-value: 8.75e-03

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 94730399   571 SPAEAKSPAEPKSPATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPAEAKSPA 639
Cdd:PRK09537   99 SAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKAPAPALTPSQKDRLETLLSPK 167

DUF1388

Repeat of unknown function (DUF1388); This family consists of several repeats of around 29 ...

518-545

9.41e-03

Pssm-ID: 429314 [Multi-domain] Cd Length: 28 Bit Score: 34.54 E-value: 9.41e-03

                           10        20
                   ....*....|....*....|....*...
gi 94730399    518 KEEAKSPGEAKSPGEAKSPAEAKSPGEA 545
Cdd:pfam07142    1 PAEAKSPAEAKSPAEAKSPGEAKSPVKV 28

EnvC

COG4942

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...

145-382

9.73e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 9.73e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  145 EREVREMRGAVLRLGAARGQLRLEQEHLLEDIAHVRQRLDEEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEE 224
Cdd:COG4942   26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94730399  225 cgylrrhhqeeVGELLGQIQGCGAAQAQAQAEARDalkcDVTSALReiRAQLEGHAVQSTLQSEEWFRVRLDRLSEaakv 304
Cdd:COG4942  106 -----------LAELLRALYRLGRQPPLALLLSPE----DFLDAVR--RLQYLKYLAPARREQAEELRADLAELAA---- 164

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 94730399  305 NTDAMRSAQEEITEYRRQLQARTTELEALKSTKESLERQRSELEDRHQADIASYQDAIQQLDSELRNTKWEMAAQLRE 382
Cdd:COG4942  165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242

DUF1388