NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1345171084|gb|PPH43991|]
View 

sugar ABC transporter permease [Rathayibacter sp. AY1E4]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
1-268 2.59e-99

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 292.42  E-value: 2.59e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084   1 MLGLFVFVPLGGAFLIGFQRTNGFG-DGVFVGLDNYARLLGDGLFWRSTLNTALFTLIVTPLSMALGLGAAVLMNSVLPA 79
Cdd:COG1175    30 LLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKLRG 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  80 RPVFRSILILPMAVSGVATALMGVLIFDENSGVLDGMLQTIGLPRIAWQSGGAAAFASVVLVTLWWRTGFNMLIYLAGLQ 159
Cdd:COG1175   110 RGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQ 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 160 GVNPALYEAARLDGANAWQQFRHVTLPLVGPSSFFLLILNVIYSFQVFDIVFVLTGGGPQNATSVLVTYAYDTGFVTRDQ 239
Cdd:COG1175   190 SIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNSTTTLVLYIYQTAFQQFDF 269

                         250       260
                  ....*....|....*....|....*....
gi 1345171084 240 GYAAAIGIVLLILTMIFTAVQWRTNRSRD 268
Cdd:COG1175   270 GYASAIAVVLFLIILVLTLLQLRLLRRRE 298
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
1-268 2.59e-99

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 292.42  E-value: 2.59e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084   1 MLGLFVFVPLGGAFLIGFQRTNGFG-DGVFVGLDNYARLLGDGLFWRSTLNTALFTLIVTPLSMALGLGAAVLMNSVLPA 79
Cdd:COG1175    30 LLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKLRG 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  80 RPVFRSILILPMAVSGVATALMGVLIFDENSGVLDGMLQTIGLPRIAWQSGGAAAFASVVLVTLWWRTGFNMLIYLAGLQ 159
Cdd:COG1175   110 RGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQ 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 160 GVNPALYEAARLDGANAWQQFRHVTLPLVGPSSFFLLILNVIYSFQVFDIVFVLTGGGPQNATSVLVTYAYDTGFVTRDQ 239
Cdd:COG1175   190 SIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNSTTTLVLYIYQTAFQQFDF 269

                         250       260
                  ....*....|....*....|....*....
gi 1345171084 240 GYAAAIGIVLLILTMIFTAVQWRTNRSRD 268
Cdd:COG1175   270 GYASAIAVVLFLIILVLTLLQLRLLRRRE 298
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
4-262 1.42e-37

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 133.80  E-value: 1.42e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084   4 LFVFVPLGGAFLIGFQRTNGFG-DGVFVGLDNYARLLGDGLFWRSTLNTALFTLIVTPLSMALGLGAAVLMNSVLPARPV 82
Cdd:PRK10561   12 IFFIWPAGEALWYSLQSVDPFGfSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDYVVRGSRF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  83 FRSILILPMAVSGVATALMGVLIFDENSGVLDGMLQTIGLPRIAWQSGGAAAFAsVVLVTLWWRTGFNMLIYLAGLQGVN 162
Cdd:PRK10561   92 YQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFL-VVFASVWKQISYNFLFFFAALQSIP 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 163 PALYEAARLDGANAWQQFRHVTLPLVGPSSFFLLILNVIYS-FQVFDIVFVLTGGGPQNATSVLVTYAYDTGFVTRDQGY 241
Cdd:PRK10561  171 RSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAfFDTFPVIDAATSGGPVQATTTLIYKIYREGFTGLDLSS 250

                         250       260
                  ....*....|....*....|.
gi 1345171084 242 AAAIGIVLLILTMIFTAVQWR 262
Cdd:PRK10561  251 SAAQSVVLMFLVIVLTVVQFR 271
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 2-251 8.77e-14

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 70.86  E-value: 8.77e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084   2 LGLFVFVPLGGAFLIGFQRtngfGDGVFVGLDNYARLLGDGLFWRSTLNTALFTLIVTPLSMALGLGAA-VLMNSVLPAR 80
Cdd:TIGR03262  14 LLLFLLLPLLALLTKSVYD----SDGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAyALTRSRIPGK 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  81 PVFRSILILPMAVSGVATALMGVLIFDeNSGVLDGMLQtiglpriawqSGGAAAFASVVLVTLWWRTGFNMLIYLAGLQG 160
Cdd:TIGR03262  90 GAFRLVALLPLLAPSLLPAISLIYLFG-NQGLLKGLLG----------GFSIYGFWGIVIGEVFYTFPHALMILVTALSL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 161 VNPALYEAARLDGANAWQQFRHVTLPLVGP---SSFFLLILNVIYSFQVFDIVfvltgGGPQNatsVLVTYAYDTGFVTR 237
Cdd:TIGR03262 159 ADGRLYEAARAMGASPWRTFFTVTLPGAKYgliSAAFVVFTLVITDFGVPKVI-----GGDYN---VLATDIYKQVIGQQ 230

                         250
                  ....*....|....
gi 1345171084 238 DQGYAAAIGIVLLI 251
Cdd:TIGR03262 231 NFPMGAVVGVLLLL 244
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 49-253 2.67e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 63.84  E-value: 2.67e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  49 LNTALFTLIVTPLSMALGLGAAVLMNSVL-PARPVFRSILILPMAVSGVATALMGVLIFDENSGvldgmlqtiglpriaW 127
Cdd:cd06261     2 LNTLLLALIATLLALVLGLLLGIILARKRgKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG---------------W 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 128 QSGGAAAFASVVLVTLWWrTGFNMLIYLAGLQGVNPALYEAARLDGANAWQQFRHVTLPLVGPSSFFLLILNVIYSFQVF 207
Cdd:cd06261    67 GILPGLGLPALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1345171084 208 DIVFVLTGGGPQNATsvLVTYAYDTGFVTRDQGYAAAIGIVLLILT 253
Cdd:cd06261   146 ALVSFLGGGEAPGPG--TGLLLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 134-260 5.97e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 54.23  E-value: 5.97e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 134 AFASVVLVTLWWRTGFNMLIYLAGLQGVNPALYEAARLDGANAWQQFRHVTLPLVGPSSFFLLILNVIYSFQVFDIVFVL 213
Cdd:pfam00528  51 GILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL 130

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1345171084 214 TGGGPQNATSVLVTYAYDTGFVtrdQGYAAAIGIVLLILTMIFTAVQ 260
Cdd:pfam00528 131 GSWPGLGLLLIEAILGYDYPEI---QGPVLAAALILLLLNLLVDILQ 174
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
1-268 2.59e-99

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 292.42  E-value: 2.59e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084   1 MLGLFVFVPLGGAFLIGFQRTNGFG-DGVFVGLDNYARLLGDGLFWRSTLNTALFTLIVTPLSMALGLGAAVLMNSVLPA 79
Cdd:COG1175    30 LLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKLRG 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  80 RPVFRSILILPMAVSGVATALMGVLIFDENSGVLDGMLQTIGLPRIAWQSGGAAAFASVVLVTLWWRTGFNMLIYLAGLQ 159
Cdd:COG1175   110 RGFFRTLFFLPWVISPVVVALIWKWLFNPDYGLLNALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQ 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 160 GVNPALYEAARLDGANAWQQFRHVTLPLVGPSSFFLLILNVIYSFQVFDIVFVLTGGGPQNATSVLVTYAYDTGFVTRDQ 239
Cdd:COG1175   190 SIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNSTTTLVLYIYQTAFQQFDF 269

                         250       260
                  ....*....|....*....|....*....
gi 1345171084 240 GYAAAIGIVLLILTMIFTAVQWRTNRSRD 268
Cdd:COG1175   270 GYASAIAVVLFLIILVLTLLQLRLLRRRE 298
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 4-255 1.42e-41

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 144.85  E-value: 1.42e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084   4 LFVFVPLGGAfLIGFQRTN---GFGDGVFVGLDNYARLLGDGLFWRSTLNT----ALFTLIVTPLSMALglgaAVLMNSV 76
Cdd:COG4209    42 IFSYLPMYGI-VIAFKDYNpfkGIFGSPWVGLKNFKFLFSSPDFWRVLRNTllisLLKLVFGFPLPIIL----ALLLNEL 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  77 L--PARPVFRSILILPMAVSGVATALMGVLIFDENSGVLDGMLQTIGLPRIAWQSGGAAAFASVVLVTLWWRTGFNMLIY 154
Cdd:COG4209   117 RskRFKKTVQTISYLPHFLSWVVVAGIVYQFLSPDTGLVNQLLRALGGEPINFLTEPKYFRPIYVFSGIWKEAGWGSIIY 196

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 155 LAGLQGVNPALYEAARLDGANAWQQFRHVTLPLVGPSSFFLLILNVIYSFQV-FDIVFVLTGGGPQNATSVLVTYAYDTG 233
Cdd:COG4209   197 LAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLILNIGNILNVgFEQIYLLYNPLNYSTSDVIDTYVYRIG 276

                         250       260
                  ....*....|....*....|....*.
gi 1345171084 234 FVTRDQGYAAAIG----IVLLILTMI 255
Cdd:COG4209   277 LQNGDYSYATAVGlfksVVGLILVLI 302
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
4-262 1.42e-37

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 133.80  E-value: 1.42e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084   4 LFVFVPLGGAFLIGFQRTNGFG-DGVFVGLDNYARLLGDGLFWRSTLNTALFTLIVTPLSMALGLGAAVLMNSVLPARPV 82
Cdd:PRK10561   12 IFFIWPAGEALWYSLQSVDPFGfSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDYVVRGSRF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  83 FRSILILPMAVSGVATALMGVLIFDENSGVLDGMLQTIGLPRIAWQSGGAAAFAsVVLVTLWWRTGFNMLIYLAGLQGVN 162
Cdd:PRK10561   92 YQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFL-VVFASVWKQISYNFLFFFAALQSIP 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 163 PALYEAARLDGANAWQQFRHVTLPLVGPSSFFLLILNVIYS-FQVFDIVFVLTGGGPQNATSVLVTYAYDTGFVTRDQGY 241
Cdd:PRK10561  171 RSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAfFDTFPVIDAATSGGPVQATTTLIYKIYREGFTGLDLSS 250

                         250       260
                  ....*....|....*....|.
gi 1345171084 242 AAAIGIVLLILTMIFTAVQWR 262
Cdd:PRK10561  251 SAAQSVVLMFLVIVLTVVQFR 271
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 1-271 1.70e-26

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 104.46  E-value: 1.70e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084   1 MLGLFVFVPLGGAFLIGFQRTNGFGDGVFV-GLDNYARLLGDGLFWRSTLNTALFTLIVTPLSMALGLGAAVLMNSVLP- 78
Cdd:COG1176    21 WLLLFFVLPLLLLLVYSFTTRDPYGGVVPGfTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPr 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  79 ARPVFRSILILPMAVSGVATALMGVLIFDENsGVLDGMLQTIGL--PRIAWQSGGAAafasVVLVTLWWRTGFNMLIYLA 156
Cdd:COG1176   101 WRNLLLLLVILPFWTSFLVRTYAWIVLLGRN-GLLNSLLLALGLidEPLRLLYTEFA----VVIGLVYVYLPFMVLPLYA 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 157 GLQGVNPALYEAARLDGANAWQQFRHVTLPLVGPSSFFLLILNVIYSFQVFDIVFVLtgGGPQNATsvLVTYAYDTGFVT 236
Cdd:COG1176   176 ALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALL--GGGKVLM--IGNLIYQQFLSA 251

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1345171084 237 RDQGYAAAIGIVLLILTMIFTAVQWRTNRSRDLVE 271
Cdd:COG1176   252 LNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLG 286
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
2-268 3.29e-26

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 106.78  E-value: 3.29e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084   2 LGLFVFVPLGGAFLIGFQrtngfgdgvfVGLDNYARLLGDGLFWRSTLNTALFTLIVTPLSMALGLGAAVLMN-SVLPAR 80
Cdd:COG1178    20 LALLVLLPLLALLLRAFT----------DGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLArTDFPGR 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  81 PVFRSILILPMAVSGVATALMGVLIFDENsgvldGMLQTIGLPRIAWQSGGAAAFASVVLVTLWWRTGFNMLIYLAGLQG 160
Cdd:COG1178    90 RLLRWLLLLPLALPPYVVALAWIALFGPN-----GLLNTLLRALFGLEPPDIYGLGGIILVLVLFNYPYVYLLLRAALRS 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 161 VNPALYEAARLDGANAWQQFRHVTLPLVGPSSFFLLILNVIYSFQVFDIVFVLTGGgpqnaTSVLVTYAYDTGFVTRDQG 240
Cdd:COG1178   165 IDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGG-----YTTLTTAIYQAWLGDFDLG 239

                         250       260
                  ....*....|....*....|....*...
gi 1345171084 241 YAAAIGIVLLILTMIFTAVQWRTNRSRD 268
Cdd:COG1178   240 AAAALALVLLLLVLLLLLLERRLRRRRR 267
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 4-268 1.70e-19

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 85.16  E-value: 1.70e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084   4 LFVFVPLGGAFLIGFQrTNGFGDGVFVG--LDNYARLLGDGLFWRSTLNTALFTLIVTPLSMALGLGAA-VLMNSVLPAR 80
Cdd:COG1177    18 LFLYLPILVLVLYSFN-DSWFLTFPPEGftLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAAlALARYRFRGR 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  81 PVFRSILILPMAVSGVATALmGVLIFdensgvldgmLQTIGLPRiawqsggaaAFASVVLVTLWWRTGFNMLIYLAGLQG 160
Cdd:COG1177    97 RLLLALLLLPLVVPGIVLGV-ALLLL----------FSALGLSG---------GLWGLILAHVVFTLPFVVLVVLARLQG 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 161 VNPALYEAARLDGANAWQQFRHVTLPLVGPSSFFLLILNVIYSFQVFDIVFVLTGGGpqnaTSVLVTYAYDtGFVTRDQG 240
Cdd:COG1177   157 FDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPG----VTTLPVYIYS-MIRRGISP 231

                         250       260
                  ....*....|....*....|....*...
gi 1345171084 241 YAAAIGIVLLILTMIFTAVQWRTNRSRD 268
Cdd:COG1177   232 EINALSTLLILLSLLLLLLAERLRRRGE 259
malF PRK10999
maltose ABC transporter permease MalF;
23-252 4.84e-19

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 86.17  E-value: 4.84e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  23 GFGDGVFVGLDNYARLLGD----GLFWRSTLNTALFTLIVTPLSMALGLGAAVLMN-SVLPARPVFRSILILPMAVSGVA 97
Cdd:PRK10999  258 SPGFTVTIGWKNFTRVFTDegiqKPFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQwEALKGKAVYRVLLILPYAVPSFI 337

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  98 TALMGVLIFDENSGVLDGMLQTIGLPRIAWQSGGAAAFASVVLVTLWWRTGFNMLIYLAGLQGVNPALYEAARLDGANAW 177
Cdd:PRK10999  338 SILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPF 417

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 178 QQFRHVTLPLVGPSSFFLLILNVIYSFQVFDIVFVLTGGGPQ--------NATSVLVTYAYDTGFV---TRDQGYAAAIG 246
Cdd:PRK10999  418 QNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDmigtttpaGYTDLLVSYTYRIAFEgggGQDFGLAAAIA 497


                  ....*.
gi 1345171084 247 IVLLIL 252
Cdd:PRK10999  498 TLIFLL 503
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 2-251 8.77e-14

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 70.86  E-value: 8.77e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084   2 LGLFVFVPLGGAFLIGFQRtngfGDGVFVGLDNYARLLGDGLFWRSTLNTALFTLIVTPLSMALGLGAA-VLMNSVLPAR 80
Cdd:TIGR03262  14 LLLFLLLPLLALLTKSVYD----SDGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAyALTRSRIPGK 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  81 PVFRSILILPMAVSGVATALMGVLIFDeNSGVLDGMLQtiglpriawqSGGAAAFASVVLVTLWWRTGFNMLIYLAGLQG 160
Cdd:TIGR03262  90 GAFRLVALLPLLAPSLLPAISLIYLFG-NQGLLKGLLG----------GFSIYGFWGIVIGEVFYTFPHALMILVTALSL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 161 VNPALYEAARLDGANAWQQFRHVTLPLVGP---SSFFLLILNVIYSFQVFDIVfvltgGGPQNatsVLVTYAYDTGFVTR 237
Cdd:TIGR03262 159 ADGRLYEAARAMGASPWRTFFTVTLPGAKYgliSAAFVVFTLVITDFGVPKVI-----GGDYN---VLATDIYKQVIGQQ 230

                         250
                  ....*....|....
gi 1345171084 238 DQGYAAAIGIVLLI 251
Cdd:TIGR03262 231 NFPMGAVVGVLLLL 244
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
2-267 1.59e-13

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 69.80  E-value: 1.59e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084   2 LGLFVFVPLGGAFLIGFQRTNGFGdgvfVGLDNYARLLGDGLFWRSTLNTALFTLIVTPLSMALGLGAAVLMN-SVLPAR 80
Cdd:COG1178   298 VLLGLLLPLLALLLWSLTKALDDN----LTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRrRRGRLA 373

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  81 PVFRSILILPMAVSGVATALmgvlifdensgvldGMLQTIGLPRIAWQSGGAAAfasVVLVTLWWRTGFNMLIYLAGLQG 160
Cdd:COG1178   374 RLLDRLAMLPYAVPGIVLGL--------------GLLLLFNRPLPLLLYGTLAI---LVLAYVVRFLPFALRSLEAALAQ 436

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 161 VNPALYEAARLDGANAWQQFRHVTLPLVGPSSFFLLILNVIYSFQVFDIVFVLTGGGpqnaTSVLVTYAYDTgFVTRDQG 240
Cdd:COG1178   437 IDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPG----FETLAVLIYQL-ASSGRYG 511

                         250       260
                  ....*....|....*....|....*..
gi 1345171084 241 YAAAIGIVLLILTMIFTAVQWRTNRSR 267
Cdd:COG1178   512 EAAALALLLVLVSLLPVLLLERLLGRR 538
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 49-253 2.67e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 63.84  E-value: 2.67e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  49 LNTALFTLIVTPLSMALGLGAAVLMNSVL-PARPVFRSILILPMAVSGVATALMGVLIFDENSGvldgmlqtiglpriaW 127
Cdd:cd06261     2 LNTLLLALIATLLALVLGLLLGIILARKRgKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG---------------W 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 128 QSGGAAAFASVVLVTLWWrTGFNMLIYLAGLQGVNPALYEAARLDGANAWQQFRHVTLPLVGPSSFFLLILNVIYSFQVF 207
Cdd:cd06261    67 GILPGLGLPALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1345171084 208 DIVFVLTGGGPQNATsvLVTYAYDTGFVTRDQGYAAAIGIVLLILT 253
Cdd:cd06261   146 ALVSFLGGGEAPGPG--TGLLLIFAILFPGDLGVAAAVALILLLLS 189
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 2-260 1.26e-11

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 63.19  E-value: 1.26e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084   2 LGLFVFVPLGGAFLIGFQRTNGFGDGVFVG------LDNYARLLGDGLFWRSTLNTALFTLIVTPLSMALGLGAA-VLMN 74
Cdd:COG0395    24 LALLFLFPLYWMVVTSFKPPAEIFSGPPSLlpseftLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAyALAR 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  75 SVLPARPVFRSILILPMAVSGVATALMGVLIFDEnsgvLdGMLQTiglpriawqsggaaaFASVVLVTLWWRTGFNMLIY 154
Cdd:COG0395   104 FRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQ----L-GLLNT---------------YWGLILPYLAFGLPFGIFLL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 155 LAGLQGVNPALYEAARLDGANAWQQFRHVTLPLVGPSSFFLLILNVIYSFQVFDIVFVLTgGGPQNATSVLVTYAYDTGF 234
Cdd:COG0395   164 RQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILL-TSPDLRTLPVGLASFQGQY 242

                         250       260
                  ....*....|....*....|....*.
gi 1345171084 235 VTRDQGYAAAIGIVLLILTMIFTAVQ 260
Cdd:COG0395   243 GTDWGLLMAAAVIATLPVLILFLFLQ 268
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 134-260 5.97e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 54.23  E-value: 5.97e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 134 AFASVVLVTLWWRTGFNMLIYLAGLQGVNPALYEAARLDGANAWQQFRHVTLPLVGPSSFFLLILNVIYSFQVFDIVFVL 213
Cdd:pfam00528  51 GILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL 130

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1345171084 214 TGGGPQNATSVLVTYAYDTGFVtrdQGYAAAIGIVLLILTMIFTAVQ 260
Cdd:pfam00528 131 GSWPGLGLLLIEAILGYDYPEI---QGPVLAAALILLLLNLLVDILQ 174
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 1-191 3.25e-07

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 50.13  E-value: 3.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084   1 MLGLFVFVPLGGAFLIGFQrtngfgdgvfVGLDNYARLLGDGLFWRSTLNTALFTLIVTPLSMALGLGAA-VLMNSVLPA 79
Cdd:COG0555    19 YLSLIVLLPLAALVLKAAG----------LGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAwVLVRYRFPG 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  80 RPVFRSILILPMAVSGVATALMGVLIFDENsGVLDGMLQTIGLpRIAWQSGGaaafasVVLVTLWWRTGFNMLIYLAGLQ 159
Cdd:COG0555    89 KRLVDALVDLPFALPTAVAGIALLLLFGPN-GWLGQLLAPLGI-KVAFTPLG------IVLAQTFVSLPFVVRTVQPVLE 160

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1345171084 160 GVNPALYEAARLDGANAWQQFRHVTLPLVGPS 191
Cdd:COG0555   161 ELDPELEEAAATLGASRWQTFRRVILPLLLPA 192
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 2-265 1.06e-06

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 48.92  E-value: 1.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084   2 LGLFVFVP----LGGAFLIgfQRTNGFGDGVFVgLDNYARLLgDGLFWRSTLNTALFTLIVTPLSMALGLGAAVLMNSVL 77
Cdd:PRK09497   19 LVLFVFLPnlmiIGTSFLT--RDDANFVKMVFT-LDNYTRLL-DPLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLP 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  78 PA-RPVFRSILILPMAVSGVaTALMGVLIFDENSGVLDGMLQTIGLP----RIAWQSggaaafASVVLVTLWWRTGFNML 152
Cdd:PRK09497   95 HKvRPLLLFLLIVPFWTNSL-IRIYGLKIFLSTKGYLNEFLLWLGVIdtpiRIMFTE------SAVIIGLVYILLPFMVL 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 153 IYLAGLQGVNPALYEAARLDGANAWQQFRHVTLPLVGP---SSFFLLILNVIYSFQVFDivfvLTGGgpqnATSVLVTYA 229
Cdd:PRK09497  168 PLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPgiiAGCLLVLLPAMGMFYVSD----LLGG----AKNLLIGNV 239

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1345171084 230 YDTGF-VTRDQGYAAAIGIVLLILTMIFTAVQWRTNR 265
Cdd:PRK09497  240 IKSQFlNIRDWPFGAATSITLTIVMGLMLLVYYRASK 276
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 32-190 3.23e-05

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 44.37  E-value: 3.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  32 LDNYARLLGDGLFWRSTLNTALFTLIVTPLSMALGLGAAVLMnsvlpARPVFR-------SILILPMavsgVATALMGVL 104
Cdd:COG3833    59 LENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALAAYAF-----SRFRFKgrkagllALLLLQM----FPAFLALVA 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 105 IFdensgvldGMLQTIGLpriawqsggaaafasvvLVTLWwrtgFNMLIYLAGLQGVN------------PALYEAARLD 172
Cdd:COG3833   130 LY--------LLLSALGL-----------------LNTLL----GLILVYLGGAIPFNtwlmkgyfdtipKELDEAAKID 180

                         170
                  ....*....|....*...
gi 1345171084 173 GANAWQQFRHVTLPLVGP 190
Cdd:COG3833   181 GASHFQIFFRIILPLAKP 198
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 36-191 3.90e-05

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 43.98  E-value: 3.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  36 ARLLGDGLFWRSTLNTALFTLIVTPLSMALGLGAAVLMNSVLPARPVFRSILILPMAVSGVATALMGVLIFdensgvldg 115
Cdd:COG0600    51 VELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWF--------- 121

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1345171084 116 mlqtiglpriawQSGGAAAFASVVLVTLWwrtgFNMLIYLAGLQGVNPALYEAARLDGANAWQQFRHVTLPLVGPS 191
Cdd:COG0600   122 ------------GIGEASKIFVIFLGAFF----PILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPY 181
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
51-265 1.97e-04

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 42.05  E-value: 1.97e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084  51 TALFTLIVTPLSMALGLGAAVLMNS-VLPARPVFRSILILPMAVSGVATALMGVLIFDENsGVLDGMLQTIGLPRI-AWQ 128
Cdd:PRK11602   69 TVLIALIAVPVNLVFGILLAWLVTRfNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSN-GPLGGWLDEHNLQLMfSWP 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1345171084 129 SggaaafasVVLVTLWWRTGFNM--LIYLAGLQGVNPAlyEAARLDGANAWQQFRHVTLPLVGPSSFFLLILNVIYSFQV 206
Cdd:PRK11602  148 G--------MVLVTIFVTCPFVVreLVPVMLSQGSQED--EAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGE 217

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1345171084 207 FDIVFVLTGGGPQNATSV-----LVTYAYDT-GFVTrdqgyAAAIGIVLLILTMIF-TAVQWRTNR 265
Cdd:PRK11602  218 FGAVSVVSGSIRGETLSLplqieLLEQDYNTvGSFT-----AAALLTLMAIITLFLkSMLQWRLEN 278
malG PRK10998
maltose ABC transporter permease MalG;
161-201 6.36e-03

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 37.38  E-value: 6.36e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1345171084 161 VNPALYEAARLDGANAWQQFRHVTLPLVGPSSFFLLILNVI 201
Cdd:PRK10998  184 IDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFI 224
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH