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Conserved domains on  [gi|1405187322|gb|PZR94176|]
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MAG: hypothetical protein DI537_08790 [Stutzerimonas stutzeri]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
gp45 super family cl44066
Mu-like prophage protein gp45 [Mobilome: prophages, transposons];
11-101 6.31e-13

Mu-like prophage protein gp45 [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG4384:

Pssm-ID: 443510 [Multi-domain]  Cd Length: 185  Bit Score: 63.47  E-value: 6.31e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405187322  11 ITRGTIVSVDDSGDWQKTKVRGFKGEEFSEVLRAQSHGVSSNPPEGSVGNFMRLGsSDR--LFALGFETKG-RPKDLPPG 87
Cdd:COG4384    19 VFRGVVTLVNDSLKIQNLQVSGLAGETLDDVERFQNYGFTSVPPAGAEAIVLPLG-GDRshGVAIAVEDRSyRLKGLKAG 97

                          90
                  ....*....|....
gi 1405187322  88 VVALYNADGNVMKL 101
Cdd:COG4384    98 EVALYHDEGHKIVL 111
 
Name Accession Description Interval E-value
gp45 COG4384
Mu-like prophage protein gp45 [Mobilome: prophages, transposons];
11-101 6.31e-13

Mu-like prophage protein gp45 [Mobilome: prophages, transposons];


Pssm-ID: 443510 [Multi-domain]  Cd Length: 185  Bit Score: 63.47  E-value: 6.31e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405187322  11 ITRGTIVSVDDSGDWQKTKVRGFKGEEFSEVLRAQSHGVSSNPPEGSVGNFMRLGsSDR--LFALGFETKG-RPKDLPPG 87
Cdd:COG4384    19 VFRGVVTLVNDSLKIQNLQVSGLAGETLDDVERFQNYGFTSVPPAGAEAIVLPLG-GDRshGVAIAVEDRSyRLKGLKAG 97

                          90
                  ....*....|....
gi 1405187322  88 VVALYNADGNVMKL 101
Cdd:COG4384    98 EVALYHDEGHKIVL 111
Phage_Mu_Gp45 pfam06890
Bacteriophage Mu Gp45 spike protein; This family consists of Bacteriophage Mu Gp45 related ...
 13-79 1.28e-08

Bacteriophage Mu Gp45 spike protein; This family consists of Bacteriophage Mu Gp45 related proteins from both phages and bacteria. This protein forms the spike which punctures the cell membrane.


Pssm-ID: 462032  Cd Length: 68  Bit Score: 49.08  E-value: 1.28e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1405187322  13 RGTIVSVDDSGDWQKTKVRGFKGEEFSEVLRAQSHGVSSNPPEGS--VGNFMRlGSSDRLFALGFETKG 79
Cdd:pfam06890   1 RGVVTLVNDGGKVQTLQVQGLAGETLDDVERFQPYGFTSVPPPGAeaVVLFVG-GDRSHGVVIAVEDRR 68
phage_P2_V TIGR01644
phage baseplate assembly protein V; This model describes a family of phage (and bacteriocin) ...
 11-138 7.02e-04

phage baseplate assembly protein V; This model describes a family of phage (and bacteriocin) proteins related to the phage P2 V gene product, which forms the small spike at the tip of the tail. Homologs in general are annotated as baseplate assembly protein V. At least one member is encoded within a region of Pectobacterium carotovorum (Erwinia carotovora) described as a bacteriocin, a phage tail-derived module able to kill bacteria closely related to the host strain. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273729 [Multi-domain]  Cd Length: 190  Bit Score: 38.54  E-value: 7.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405187322  11 ITRGTIVSVDDS-GDWQKTKVRGFKGEEFSEVLRAQSHGVSSNPPEG------SVGnfmrlGSSDRLFALG--FETKGRP 81
Cdd:TIGR01644   9 IRRGVVAEVDDAaGRVRVLQGELLTGWLPWLVERAGNYRTWSAPSVGeqvlvlSPG-----GQLDTGVVLPgvYSDDFRP 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1405187322  82 KDLPPGVVALYNADGNVMKLlpaktdwDHGGKNHHARGIAKQKVEASDW--VQFDSGAV 138
Cdd:TIGR01644  84 PSLSAGDTVTYFADGARIEY-------DKAAHALTVCGIKTVYLDAGDGttVTVDAPQI 135
 
Name Accession Description Interval E-value
gp45 COG4384
Mu-like prophage protein gp45 [Mobilome: prophages, transposons];
11-101 6.31e-13

Mu-like prophage protein gp45 [Mobilome: prophages, transposons];


Pssm-ID: 443510 [Multi-domain]  Cd Length: 185  Bit Score: 63.47  E-value: 6.31e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405187322  11 ITRGTIVSVDDSGDWQKTKVRGFKGEEFSEVLRAQSHGVSSNPPEGSVGNFMRLGsSDR--LFALGFETKG-RPKDLPPG 87
Cdd:COG4384    19 VFRGVVTLVNDSLKIQNLQVSGLAGETLDDVERFQNYGFTSVPPAGAEAIVLPLG-GDRshGVAIAVEDRSyRLKGLKAG 97

                          90
                  ....*....|....
gi 1405187322  88 VVALYNADGNVMKL 101
Cdd:COG4384    98 EVALYHDEGHKIVL 111
Phage_Mu_Gp45 pfam06890
Bacteriophage Mu Gp45 spike protein; This family consists of Bacteriophage Mu Gp45 related ...
 13-79 1.28e-08

Bacteriophage Mu Gp45 spike protein; This family consists of Bacteriophage Mu Gp45 related proteins from both phages and bacteria. This protein forms the spike which punctures the cell membrane.


Pssm-ID: 462032  Cd Length: 68  Bit Score: 49.08  E-value: 1.28e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1405187322  13 RGTIVSVDDSGDWQKTKVRGFKGEEFSEVLRAQSHGVSSNPPEGS--VGNFMRlGSSDRLFALGFETKG 79
Cdd:pfam06890   1 RGVVTLVNDGGKVQTLQVQGLAGETLDDVERFQPYGFTSVPPPGAeaVVLFVG-GDRSHGVVIAVEDRR 68
phage_P2_V TIGR01644
phage baseplate assembly protein V; This model describes a family of phage (and bacteriocin) ...
 11-138 7.02e-04

phage baseplate assembly protein V; This model describes a family of phage (and bacteriocin) proteins related to the phage P2 V gene product, which forms the small spike at the tip of the tail. Homologs in general are annotated as baseplate assembly protein V. At least one member is encoded within a region of Pectobacterium carotovorum (Erwinia carotovora) described as a bacteriocin, a phage tail-derived module able to kill bacteria closely related to the host strain. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273729 [Multi-domain]  Cd Length: 190  Bit Score: 38.54  E-value: 7.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405187322  11 ITRGTIVSVDDS-GDWQKTKVRGFKGEEFSEVLRAQSHGVSSNPPEG------SVGnfmrlGSSDRLFALG--FETKGRP 81
Cdd:TIGR01644   9 IRRGVVAEVDDAaGRVRVLQGELLTGWLPWLVERAGNYRTWSAPSVGeqvlvlSPG-----GQLDTGVVLPgvYSDDFRP 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1405187322  82 KDLPPGVVALYNADGNVMKLlpaktdwDHGGKNHHARGIAKQKVEASDW--VQFDSGAV 138
Cdd:TIGR01644  84 PSLSAGDTVTYFADGARIEY-------DKAAHALTVCGIKTVYLDAGDGttVTVDAPQI 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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