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Conserved domains on  [gi|73921623|sp|Q7DMA9|]
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RecName: Full=Peptidyl-prolyl cis-trans isomerase PASTICCINO1; AltName: Full=70 kDa peptidyl-prolyl isomerase; AltName: Full=FK506-binding protein 72; Short=AtFKBP72; AltName: Full=Immunophilin FKBP72; AltName: Full=Peptidyl-prolyl cis-trans isomerase FKBP72; Short=PPIase FKBP72; AltName: Full=Rotamase

Protein Classification

FKBP_C and TPR domain-containing protein( domain architecture ID 11991410)

FKBP_C and TPR domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
44-144 2.48e-21

FKBP-type peptidyl-prolyl cis-trans isomerase;


:

Pssm-ID: 459735  Cd Length: 94  Bit Score: 88.79  E-value: 2.48e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623    44 GDSSPVDGDQVIYHCTVRTLDGVVVESTRSesggRGVPIRDVLGNSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAEIDC 123
Cdd:pfam00254   1 GPEKAKKGDRVTVHYTGTLEDGTVFDSSYD----RGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGL 76

                          90       100
                  ....*....|....*....|.
gi 73921623   124 pvsAPENFPKDDELHFEIELL 144
Cdd:pfam00254  77 ---AGPVIPPNATLVFEVELL 94
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
291-380 1.91e-18

FKBP-type peptidyl-prolyl cis-trans isomerase;


:

Pssm-ID: 459735  Cd Length: 94  Bit Score: 80.70  E-value: 1.91e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623   291 DSRLSVHYKGMLLNeeKTVFYDSKidNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYDKFPR-PPGVSE 369
Cdd:pfam00254   8 GDRVTVHYTGTLED--GTVFDSSY--DRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLaGPVIPP 83

                          90
                  ....*....|.
gi 73921623   370 GAHVQWEIELL 380
Cdd:pfam00254  84 NATLVFEVELL 94
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
407-585 1.22e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.11  E-value: 1.22e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 407 GNRLFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGL 486
Cdd:COG0457  49 GLAYLRLGRYEEALADYEQALE----LDPDDAE-----------ALNNLGLALQALGRYEEALEDYDKALELDPDDAEAL 113

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 487 YRRGMAYIAGGEYDDARNDFNMMIKVD-KSSEADATAALLKLKQKE-QEAESKARKQFKGLFDKRPGEITEVGSEIREES 564
Cdd:COG0457 114 YNLGLALLELGRYDEAIEAYERALELDpDDADALYNLGIALEKLGRyEEALELLEKLEAAALAALLAAALGEAALALAAA 193

                       170       180
                ....*....|....*....|.
gi 73921623 565 KTIEEVDETKDNDDDETLEEE 585
Cdd:COG0457 194 EVLLALLLALEQALRKKLAIL 214
FKBP_C super family cl19519
FKBP-type peptidyl-prolyl cis-trans isomerase;
168-257 2.35e-04

FKBP-type peptidyl-prolyl cis-trans isomerase;


The actual alignment was detected with superfamily member pfam00254:

Pssm-ID: 473184  Cd Length: 94  Bit Score: 40.64  E-value: 2.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623   168 GWESPREPYEVKARISAKSGDGHVIFS--HTEEPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRkqylteSPLLHIDQ 245
Cdd:pfam00254   1 GPEKAKKGDRVTVHYTGTLEDGTVFDSsyDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIP------PELAYGEE 74

                          90       100
                  ....*....|....*....|
gi 73921623   246 DLEE--------VHFEVELV 257
Cdd:pfam00254  75 GLAGpvippnatLVFEVELL 94
 
Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
44-144 2.48e-21

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 88.79  E-value: 2.48e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623    44 GDSSPVDGDQVIYHCTVRTLDGVVVESTRSesggRGVPIRDVLGNSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAEIDC 123
Cdd:pfam00254   1 GPEKAKKGDRVTVHYTGTLEDGTVFDSSYD----RGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGL 76

                          90       100
                  ....*....|....*....|.
gi 73921623   124 pvsAPENFPKDDELHFEIELL 144
Cdd:pfam00254  77 ---AGPVIPPNATLVFEVELL 94
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
291-380 1.91e-18

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 80.70  E-value: 1.91e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623   291 DSRLSVHYKGMLLNeeKTVFYDSKidNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYDKFPR-PPGVSE 369
Cdd:pfam00254   8 GDRVTVHYTGTLED--GTVFDSSY--DRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLaGPVIPP 83

                          90
                  ....*....|.
gi 73921623   370 GAHVQWEIELL 380
Cdd:pfam00254  84 NATLVFEVELL 94
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 38-146 2.35e-14

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 69.06  E-value: 2.35e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623  38 VVRPGGGDSsPVDGDQVIYHCTVRTLDGVVVEStrseSGGRGVPIRDVLGNSKMILGLLEGIPTMHKGEIAMFKMKPEMH 117
Cdd:COG0545   5 VLKEGTGAK-PKAGDTVTVHYTGTLLDGTVFDS----SYDRGEPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPELA 79

                        90       100
                ....*....|....*....|....*....
gi 73921623 118 YAEIdcpvSAPENFPKDDELHFEIELLDF 146
Cdd:COG0545  80 YGER----GAGGVIPPNSTLVFEVELLDV 104
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
407-585 1.22e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.11  E-value: 1.22e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 407 GNRLFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGL 486
Cdd:COG0457  49 GLAYLRLGRYEEALADYEQALE----LDPDDAE-----------ALNNLGLALQALGRYEEALEDYDKALELDPDDAEAL 113

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 487 YRRGMAYIAGGEYDDARNDFNMMIKVD-KSSEADATAALLKLKQKE-QEAESKARKQFKGLFDKRPGEITEVGSEIREES 564
Cdd:COG0457 114 YNLGLALLELGRYDEAIEAYERALELDpDDADALYNLGIALEKLGRyEEALELLEKLEAAALAALLAAALGEAALALAAA 193

                       170       180
                ....*....|....*....|.
gi 73921623 565 KTIEEVDETKDNDDDETLEEE 585
Cdd:COG0457 194 EVLLALLLALEQALRKKLAIL 214
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 276-382 3.26e-12

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 63.28  E-value: 3.26e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 276 IRDGRGEFPMDcplqDSRLSVHYKGMLLNeeKTVFyDSKIDNNdQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPD 355
Cdd:COG0545   6 LKEGTGAKPKA----GDTVTVHYTGTLLD--GTVF-DSSYDRG-EPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPE 77

                        90       100
                ....*....|....*....|....*..
gi 73921623 356 YAYDKFPRPPGVSEGAHVQWEIELLGF 382
Cdd:COG0545  78 LAYGERGAGGVIPPNSTLVFEVELLDV 104
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 400-558 1.08e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.54  E-value: 1.08e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623   400 ADKIRSTGNRLFKEGKFELAKAKYEKVLRefnhvnpQDEDEgkifgdtrnMLHLNVAACLLKMGEWRKSIETCNKVLEAK 479
Cdd:TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIE-------CKPDP---------VYYSNRAACHNALGDWEKVVEDTTAALELD 190

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 73921623   480 PGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAALLKLKQKeqEAESKARKQFKGLFDKRPgEITEVGS 558
Cdd:TIGR00990 191 PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKK--FAESKAKEILETKPENLP-SVTFVGN 266
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
168-257 2.35e-04

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 40.64  E-value: 2.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623   168 GWESPREPYEVKARISAKSGDGHVIFS--HTEEPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRkqylteSPLLHIDQ 245
Cdd:pfam00254   1 GPEKAKKGDRVTVHYTGTLEDGTVFDSsyDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIP------PELAYGEE 74

                          90       100
                  ....*....|....*....|
gi 73921623   246 DLEE--------VHFEVELV 257
Cdd:pfam00254  75 GLAGpvippnatLVFEVELL 94
TPR_1 pfam00515
Tetratricopeptide repeat;
483-513 9.98e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 33.93  E-value: 9.98e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 73921623   483 VKGLYRRGMAYIAGGEYDDARNDFNMMIKVD 513
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELN 31
 
Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
44-144 2.48e-21

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 88.79  E-value: 2.48e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623    44 GDSSPVDGDQVIYHCTVRTLDGVVVESTRSesggRGVPIRDVLGNSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAEIDC 123
Cdd:pfam00254   1 GPEKAKKGDRVTVHYTGTLEDGTVFDSSYD----RGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGL 76

                          90       100
                  ....*....|....*....|.
gi 73921623   124 pvsAPENFPKDDELHFEIELL 144
Cdd:pfam00254  77 ---AGPVIPPNATLVFEVELL 94
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
291-380 1.91e-18

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 80.70  E-value: 1.91e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623   291 DSRLSVHYKGMLLNeeKTVFYDSKidNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYDKFPR-PPGVSE 369
Cdd:pfam00254   8 GDRVTVHYTGTLED--GTVFDSSY--DRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLaGPVIPP 83

                          90
                  ....*....|.
gi 73921623   370 GAHVQWEIELL 380
Cdd:pfam00254  84 NATLVFEVELL 94
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 38-146 2.35e-14

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 69.06  E-value: 2.35e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623  38 VVRPGGGDSsPVDGDQVIYHCTVRTLDGVVVEStrseSGGRGVPIRDVLGNSKMILGLLEGIPTMHKGEIAMFKMKPEMH 117
Cdd:COG0545   5 VLKEGTGAK-PKAGDTVTVHYTGTLLDGTVFDS----SYDRGEPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPELA 79

                        90       100
                ....*....|....*....|....*....
gi 73921623 118 YAEIdcpvSAPENFPKDDELHFEIELLDF 146
Cdd:COG0545  80 YGER----GAGGVIPPNSTLVFEVELLDV 104
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
407-585 1.22e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.11  E-value: 1.22e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 407 GNRLFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGL 486
Cdd:COG0457  49 GLAYLRLGRYEEALADYEQALE----LDPDDAE-----------ALNNLGLALQALGRYEEALEDYDKALELDPDDAEAL 113

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 487 YRRGMAYIAGGEYDDARNDFNMMIKVD-KSSEADATAALLKLKQKE-QEAESKARKQFKGLFDKRPGEITEVGSEIREES 564
Cdd:COG0457 114 YNLGLALLELGRYDEAIEAYERALELDpDDADALYNLGIALEKLGRyEEALELLEKLEAAALAALLAAALGEAALALAAA 193

                       170       180
                ....*....|....*....|.
gi 73921623 565 KTIEEVDETKDNDDDETLEEE 585
Cdd:COG0457 194 EVLLALLLALEQALRKKLAIL 214
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 276-382 3.26e-12

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 63.28  E-value: 3.26e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 276 IRDGRGEFPMDcplqDSRLSVHYKGMLLNeeKTVFyDSKIDNNdQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPD 355
Cdd:COG0545   6 LKEGTGAKPKA----GDTVTVHYTGTLLD--GTVF-DSSYDRG-EPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPE 77

                        90       100
                ....*....|....*....|....*..
gi 73921623 356 YAYDKFPRPPGVSEGAHVQWEIELLGF 382
Cdd:COG0545  78 LAYGERGAGGVIPPNSTLVFEVELLDV 104
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
397-543 1.33e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 64.55  E-value: 1.33e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 397 MDEADKIRSTGNRLFKEGKFELAKAKYEKVLREfnhvNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVL 476
Cdd:COG4785  70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALEL----DPDLAE-----------AYNNRGLAYLLLGDYDAALEDFDRAL 134

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 477 EAKPGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKS------------SEADATAALLKLKQKEQEAE------SKA 538
Cdd:COG4785 135 ELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNdperalwlylaeRKLDPEKALALLLEDWATAYllqgdtEEA 214


                ....*
gi 73921623 539 RKQFK 543
Cdd:COG4785 215 RELFK 219
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
398-532 1.95e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 64.64  E-value: 1.95e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 398 DEADKIRSTGNRLFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLE 477
Cdd:COG0457   6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALE----LDPDDAE-----------ALYNLGLAYLRLGRYEEALADYEQALE 70

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 73921623 478 AKPGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSseaDATA------ALLKLKQKEQ 532
Cdd:COG0457  71 LDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPD---DAEAlynlglALLELGRYDE 128
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 407-552 3.81e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 63.98  E-value: 3.81e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 407 GNRLFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGL 486
Cdd:COG2956  15 GLNYLLNGQPDKAIDLLEEALE----LDPETVE-----------AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEAL 79

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 73921623 487 YRRGMAYIAGGEYDDARNDFNMMIKVDKSSEaDATAALLKLKQKEQEAEsKARKQFKGLFDKRPGE 552
Cdd:COG2956  80 LELAQDYLKAGLLDRAEELLEKLLELDPDDA-EALRLLAEIYEQEGDWE-KAIEVLERLLKLGPEN 143
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 407-526 6.60e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.40  E-value: 6.60e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 407 GNRLFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGL 486
Cdd:COG4235  24 GRAYLRLGRYDEALAAYEKALR----LDPDNAD-----------ALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL 88

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 73921623 487 YRRGMAYIAGGEYDDARNDFNMMIKVDkssEADATAALLK 526
Cdd:COG4235  89 YLLGLAAFQQGDYAEAIAAWQKLLALL---PADAPARLLE 125
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 411-550 1.68e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 62.05  E-value: 1.68e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 411 FKEGKFELAKAKYEKVLREfnhvNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGLYRRG 490
Cdd:COG2956  87 LKAGLLDRAEELLEKLLEL----DPDDAE-----------ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELA 151

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 491 MAYIAGGEYDDARNDFNMMIKVDKSSeADATAALLKLKQKEQEAEsKARKQFKGLFDKRP 550
Cdd:COG2956 152 ELYLEQGDYDEAIEALEKALKLDPDC-ARALLLLAELYLEQGDYE-EAIAALERALEQDP 209
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 400-558 1.08e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.54  E-value: 1.08e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623   400 ADKIRSTGNRLFKEGKFELAKAKYEKVLRefnhvnpQDEDEgkifgdtrnMLHLNVAACLLKMGEWRKSIETCNKVLEAK 479
Cdd:TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIE-------CKPDP---------VYYSNRAACHNALGDWEKVVEDTTAALELD 190

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 73921623   480 PGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAALLKLKQKeqEAESKARKQFKGLFDKRPgEITEVGS 558
Cdd:TIGR00990 191 PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKK--FAESKAKEILETKPENLP-SVTFVGN 266
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 410-529 2.90e-09

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 55.00  E-value: 2.90e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 410 LFKEGKFELAKAKYEKVLREFnhvnPQDEDEGKIfgdtrnmlHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVK---GL 486
Cdd:COG1729   3 LLKAGDYDEAIAAFKAFLKRY----PNSPLAPDA--------LYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdAL 70

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 73921623 487 YRRGMAYIAGGEYDDARNDFNMMIKVDKSSEAdATAALLKLKQ 529
Cdd:COG1729  71 LKLGLSYLELGDYDKARATLEELIKKYPDSEA-AKEARARLAR 112
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 407-543 3.91e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 58.20  E-value: 3.91e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 407 GNRLFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGL 486
Cdd:COG2956 151 AELYLEQGDYDEAIEALEKALK----LDPDCAR-----------ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPAL 215

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 73921623 487 YRRGMAYIAGGEYDDARNDFNMMIKVDKSSEA-DATAALLKLKQKEQEAESKARKQFK 543
Cdd:COG2956 216 PRLAELYEKLGDPEEALELLRKALELDPSDDLlLALADLLERKEGLEAALALLERQLR 273
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
410-515 1.65e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 52.48  E-value: 1.65e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 410 LFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIEtCNKVLEAKPGHVKGLYRR 489
Cdd:COG3063   2 YLKLGDLEEAEEYYEKALE----LDPDNAD-----------ALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNL 65

                        90       100
                ....*....|....*....|....*.
gi 73921623 490 GMAYIAGGEYDDARNDFNMMIKVDKS 515
Cdd:COG3063  66 AELLLELGDYDEALAYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 410-514 8.57e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.88  E-value: 8.57e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 410 LFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGLYRR 489
Cdd:COG5010  64 YNKLGDFEESLALLEQALQ----LDPNNPE-----------LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNL 128

                        90       100
                ....*....|....*....|....*
gi 73921623 490 GMAYIAGGEYDDARNDFNMMIKVDK 514
Cdd:COG5010 129 AALLLSLGQDDEAKAALQRALGTSP 153
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 407-513 2.13e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.58  E-value: 2.13e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 407 GNRLFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGL 486
Cdd:COG4783  45 GEILLQLGDLDEAIVLLHEALE----LDPDEPE-----------ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAY 109

                        90       100
                ....*....|....*....|....*..
gi 73921623 487 YRRGMAYIAGGEYDDARNDFNMMIKVD 513
Cdd:COG4783 110 LRLARAYRALGRPDEAIAALEKALELD 136
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 418-550 2.91e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.34  E-value: 2.91e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 418 LAKAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGLYRRGMAYIAGG 497
Cdd:COG5010  23 LVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG 102

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....
gi 73921623 498 EYDDARNDFNMMIKVD-KSSEADATAALLKLKQKEQEAeskARKQFKGLFDKRP 550
Cdd:COG5010 103 DKDEAKEYYEKALALSpDNPNAYSNLAALLLSLGQDDE---AKAALQRALGTSP 153
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 407-540 3.93e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.07  E-value: 3.93e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 407 GNRLFKEGKFELAKAKYEKVLRefnhVNPQDEDegkifgdtrnmLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGL 486
Cdd:COG3914  85 ALLLQALGRYEEALALYRRALA----LNPDNAE-----------ALFNLGNLLLALGRLEEALAALRRALALNPDFAEAY 149

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 73921623 487 YRRGMAYIAGGEYDDARNDFNMMIKVD-KSSEADATAALLKLKQKE-QEAESKARK 540
Cdd:COG3914 150 LNLGEALRRLGRLEEAIAALRRALELDpDNAEALNNLGNALQDLGRlEEAIAAYRR 205
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 407-550 4.74e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.65  E-value: 4.74e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 407 GNRLFKEGKFELAKAKYEKVLRefnhvnpQDEDegkifgdtRNMLHLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGL 486
Cdd:COG2956  49 GNLYRRRGEYDRAIRIHQKLLE-------RDPD--------RAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEAL 113

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 73921623 487 YRRGMAYIAGGEYDDARNDFNMMIKVD-KSSEADATAALLKLKQKEQEaesKARKQFKGLFDKRP 550
Cdd:COG2956 114 RLLAEIYEQEGDWEKAIEVLERLLKLGpENAHAYCELAELYLEQGDYD---EAIEALEKALKLDP 175
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
458-550 6.86e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.86  E-value: 6.86e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 458 CLLKMGEWRKSIETCNKVLEAKPGHVKGLYRRGMAYIAGGEYDDARnDFNMMIKVD-KSSEADATAALLKLKQKEQEaes 536
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDpNNAEALLNLAELLLELGDYD--- 76

                        90
                ....*....|....
gi 73921623 537 KARKQFKGLFDKRP 550
Cdd:COG3063  77 EALAYLERALELDP 90
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 452-550 7.82e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 48.65  E-value: 7.82e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 452 HLNVAACLLKMGEWRKSIETCNKVLEAKPGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVD-KSSEADATAALLKLKQK 530
Cdd:COG4783   7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDpDEPEARLNLGLALLKAG 86

                        90       100
                ....*....|....*....|
gi 73921623 531 EQEaesKARKQFKGLFDKRP 550
Cdd:COG4783  87 DYD---EALALLEKALKLDP 103
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
168-257 2.35e-04

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 40.64  E-value: 2.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623   168 GWESPREPYEVKARISAKSGDGHVIFS--HTEEPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRkqylteSPLLHIDQ 245
Cdd:pfam00254   1 GPEKAKKGDRVTVHYTGTLEDGTVFDSsyDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIP------PELAYGEE 74

                          90       100
                  ....*....|....*....|
gi 73921623   246 DLEE--------VHFEVELV 257
Cdd:pfam00254  75 GLAGpvippnatLVFEVELL 94
SlpA COG1047
Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein ...
 290-374 1.05e-03

Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440668 [Multi-domain]  Cd Length: 138  Bit Score: 39.70  E-value: 1.05e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 290 QDSRLSVHYKGMLlnEEKTVFYDSKidnNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAY----------- 358
Cdd:COG1047   3 KGDVVTLHYTLKL--EDGEVFDSTF---EGEPLEFLHGAGQLIPGLEEALEGMEVGDKKTVTLPPEEAYgerdpelvqtv 77

                        90
                ....*....|....*...
gi 73921623 359 --DKFPRPPGVSEGAHVQ 374
Cdd:COG1047  78 prEQFPEDEELEVGMQVE 95
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 413-533 1.30e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.99  E-value: 1.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623   413 EGKFELAKAKYEKVLREfnhvNPQDEDEgkifgdtrnmlhLNVAACLLKM-GEWRKSIETCNKVLEAKPGHVKGLYRRGM 491
Cdd:TIGR02917 172 ENRFDEARALIDEVLTA----DPGNVDA------------LLLKGDLLLSlGNIELALAAYRKAIALRPNNIAVLLALAT 235

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 73921623   492 AYIAGGEYDDARNDFNMMIK-VDKSSEADATAALLKLKQKEQE 533
Cdd:TIGR02917 236 ILIEAGEFEEAEKHADALLKkAPNSPLAHYLKALVDFQKKNYE 278
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
407-548 5.99e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 38.71  E-value: 5.99e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73921623 407 GNRLFKEGKFELAKAKYEKVLRefnhvnpqdedegKIFGDTRNMLhLNVAACLLKMGEWRKSIETCNKVLEAKP----GH 482
Cdd:COG4700  96 ADALLELGRYDEAIELYEEALT-------------GIFADDPHIL-LGLAQALFELGRYAEALETLEKLIAKNPdfksSD 161

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 73921623 483 VKGLYrrGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAALLKLKQKEQEAeskARKQFKGLFDK 548
Cdd:COG4700 162 AHLLY--ARALEALGDLEAAEAELEALARRYSGPEARYRYAKFLARQGRTAE---AKELLEEILDE 222
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
477-513 7.48e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 38.36  E-value: 7.48e-03
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 73921623 477 EAKPGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVD 513
Cdd:COG4785  67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD 103
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 469-540 8.32e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 36.91  E-value: 8.32e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 73921623 469 IETCNKVLEAKPGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADAT--AALLKLKQKEQEAESKARK 540
Cdd:COG4235   3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLdlAEALLAAGDTEEAEELLER 76
TPR_1 pfam00515
Tetratricopeptide repeat;
483-513 9.98e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 33.93  E-value: 9.98e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 73921623   483 VKGLYRRGMAYIAGGEYDDARNDFNMMIKVD 513
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELN 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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