NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|20137930|sp|Q9BUW7|]
View 

RecName: Full=Bublin coiled-coil protein; AltName: Full=UPF0184 protein C9orf16

Protein Classification

UPF0184 family protein( domain architecture ID 10508482)

UPF0184 family protein similar to Homo sapiens protein C9orf16

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
UPF0184 pfam03670
Uncharacterized protein family (UPF0184);
1-83 1.42e-37

Uncharacterized protein family (UPF0184);


:

Pssm-ID: 112485  Cd Length: 83  Bit Score: 120.44  E-value: 1.42e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20137930    1 MSGPNGDLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQQLGEAPSD 80
Cdd:pfam03670  1 MSGPNGDDPSSVEDGGNTNVDEFGLQEYEAINSMLDQINSALDALEERNDDLMSQLRELLESNRQIRLEFAEQLDNAPES 80


                 ...
gi 20137930   81 ASP 83
Cdd:pfam03670 81 GSD 83
 
Name Accession Description Interval E-value
UPF0184 pfam03670
Uncharacterized protein family (UPF0184);
1-83 1.42e-37

Uncharacterized protein family (UPF0184);


Pssm-ID: 112485  Cd Length: 83  Bit Score: 120.44  E-value: 1.42e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20137930    1 MSGPNGDLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQQLGEAPSD 80
Cdd:pfam03670  1 MSGPNGDDPSSVEDGGNTNVDEFGLQEYEAINSMLDQINSALDALEERNDDLMSQLRELLESNRQIRLEFAEQLDNAPES 80


                 ...
gi 20137930   81 ASP 83
Cdd:pfam03670 81 GSD 83
 
Name Accession Description Interval E-value
UPF0184 pfam03670
Uncharacterized protein family (UPF0184);
1-83 1.42e-37

Uncharacterized protein family (UPF0184);


Pssm-ID: 112485  Cd Length: 83  Bit Score: 120.44  E-value: 1.42e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20137930    1 MSGPNGDLGMPVEAGAEGEEDGFGEAEYAAINSMLDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQQLGEAPSD 80
Cdd:pfam03670  1 MSGPNGDDPSSVEDGGNTNVDEFGLQEYEAINSMLDQINSALDALEERNDDLMSQLRELLESNRQIRLEFAEQLDNAPES 80


                 ...
gi 20137930   81 ASP 83
Cdd:pfam03670 81 GSD 83
EzrA pfam06160
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ...
 35-72 2.12e-03

Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.


Pssm-ID: 428797 [Multi-domain]  Cd Length: 542  Bit Score: 34.83  E-value: 2.12e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 20137930    35 LDQINSCLDHLEEKNDHLHARLQELLESNRQTRLEFQQ 72
Cdd:pfam06160  88 LDEIEELLDDIEEDIKQILEELDELLESEEKNREEVEE 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH