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Conserved domains on  [gi|82004389|sp|Q9DGT6|]
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RecName: Full=Major viral transcription factor ICP4 homolog; AltName: Full=Immediate-early protein IE175

Protein Classification

PHA03307 family protein( domain architecture ID 11476204)

PHA03307 family protein

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
956-2276 0e+00

transcriptional regulator ICP4; Provisional


:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 1068.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   956 DDGQPMFPPLPVPDWNNPSTDWRPSPPR---SGPKKDFCGDLPAPLTSGPRLTTPSSGRMSELPHTTSSPRSSPRPRGPE 1032
Cdd:PHA03307  218 SSPAPAPGRSAADDAGASSSDSSSSESSgcgWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPS 297
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1033 TSPSNehiiispPRNPPSNTTHRNVGHVSRSPSSSSSSSSSSSPSSSSLIVPSSPSSSRSPSPSPPRPRADCSSRPRRGR 1112
Cdd:PHA03307  298 PSPSS-------PGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPR 370
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1113 GSNRGGRSgPQSKGRKTSPRTRKLEDEDYLPQETANRRGGGRPRGRPPKSGravqrndiqVTSSSGLADTSPYDLCGSVW 1192
Cdd:PHA03307  371 PSRAPSSP-AASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAG---------AASGAFYARYPLLTPSGEPW 440
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1193 WEVPLPPPGRCWFGGLGGHRQALTDSPEIVEAIHRFNTSHGPVPVYVEEMKDYAKQYDALVNSLFHKSMKVNPlnWMHHG 1272
Cdd:PHA03307  441 PGSPPPPPGRVRYGGLGDSRPGLWDAPEVREAAARYEASPGPVPVYVPEMGDSAKQYAALVRLLYTPDREAMG--WLQNP 518
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1273 KLSPADAALNHIYVQKFQSsYDSPGAAVTGTVNRCIPHIAGAMKERKLLWAFPHIAASIAMTRRYCKDQKTFLFRSLKKA 1352
Cdd:PHA03307  519 KLTGPDQALDQFCQKKFQA-PRGSGSFITGSVARPVPHIGDAMAAGNALWALPHAAAAVAMSRRYDRAQKGFLLQSLRRA 597
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1353 YASMAFPDNSSETEkgisskpstspsvlittstqttapphapkidvtaihgrvyqsvvdlsrcladgslDDPEFSFAGCT 1432
Cdd:PHA03307  598 YAPMAYPENAADTG-------------------------------------------------------AGAAAPAPAAP 622
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1433 RPDCLVEEFDAARPLEELADACVLACDSVVAALLCGPDGPHRVaKMLSFYDSRITPHvpdlqQWEKCRILLVSWYHELSD 1512
Cdd:PHA03307  623 RPDAAAAGGASARPLRELADACVLACRAVLEALLEGPDGLSAV-PGLAFPRPACPPR-----ALEACPARLESWLRELRD 696
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1513 LRAAVYGAYGNT--PTSQHLDERALAARVVSLIAETIGPLVRQDPDRAWVRMGSRDITSLLLRDWRGTNdgdPGLVKAKH 1590
Cdd:PHA03307  697 LRDAVYLARLRGdlPVAGGREERVAAVRAVSLVARTVAPLVRYSPRRARARASAWDITDALFSNPSLVP---AKLAEALA 773
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1591 LRRTAELLNDGRSSkgtygvfaPPRRPDQLFRGPGRPRRSTSSSQSASDKSPIKSTHRHTSDPIPISTprperdpagtph 1670
Cdd:PHA03307  774 LLEPAEPQRGAGSS--------PPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESS------------ 833
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1671 entmsgpvqpaanghscsstptpakkgnktssdtislkdptktrikasakaqtDETLPETSTAHPSAMDQSSSLERKNLY 1750
Cdd:PHA03307  834 -----------------------------------------------------GPARPPGAAARPPPARSSESSKSKPAA 860
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1751 TGPAVSSKERRRSAQSSTPSDIGGVSRKRKSAPEQYKQGLQTPLPMPEPSVGqtlldptttthdilSSSLPnrscsssps 1830
Cdd:PHA03307  861 AGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVK--------------LGPMP--------- 917
                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1831 pskrpyhpscysptdimtgalvgPRGRQDRAAFRQFPVGTVIGQTPPQSVLNAYCPNGAFVELVEFARIPEPWQEVLRYS 1910
Cdd:PHA03307  918 -----------------------PGGPDPRGGFRRVPPGDLHTPAPSAAALAAYCPPEVVAELVDHPLFPEPWRPALAFD 974
                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1911 PEAMADIARVANALPGKYNSNEiitsaaseAFHTATSKLRARTAWMRyQQESPDDVSIVVLYSPLPGEHLFCVPAPDTPP 1990
Cdd:PHA03307  975 PEALAEIAARCGGPPPRSGSAF--------GPLRASGPLRRRAAWMR-QIPDPEDVRVVVLYSPLPGEHLFGVPAPDASP 1045
                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1991 GGLKFDNKRGGLSFLLAAFSNRLCLPKSSAWAGRWKAAPDISPLTRMGVLFLSTEDLGYQGAVEYLQRQCMKRKKKLIIM 2070
Cdd:PHA03307 1046 GGPAWSPERGGLSFLLAALGNRLCLPDSHAWAGNWTGAPDVSALNAQGVLLLSTRDLAFAGAVEYLCLRLGSARRRLIVL 1125
                        1130      1140      1150      1160      1170      1180      1190      1200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  2071 DTVEDRYRLPNGPCiIEEATRYMKCIISPRSQCCVRWPGLLDFGTTIITSRDVVGPLTLMDLEQyYYCEIGIEDSTINLC 2150
Cdd:PHA03307 1126 DTVDPEDWPADGPA-VSQYHVYLRCAVLPRAQCAVRWPAARDLARAVLTSSRVFGPGLFARVEA-AFARLYPDAPPLRLC 1203
                        1210      1220      1230      1240      1250      1260      1270      1280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  2151 CTGNVRYTVETRLEDVSCVPTTPLFYFAAV-----------------KHVRPDFLCGETYSNRAARKWGLCAPLRPIYVI 2213
Cdd:PHA03307 1204 RGANVRYTVRTRLGPRTRVPLPPREYRQAVlpaldgckdmaaqaeglGLGAPDFLEGEAHSHRAANRWGLGAPLRPVYLA 1283
                        1290      1300      1310      1320      1330      1340
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 82004389  2214 ESKMNAIVSPSFLHPTARNLCRSVILPPDPEARPVVVHIpegtcSALAEDMvaSIRSSCITWG 2276
Cdd:PHA03307 1284 EGRRAAIAGPDELPAVVRAFCRAALLEPDPEAPPLVLPP-----SAAAEAA--HARAPRVTWA 1339
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
220-449 8.33e-10

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 64.42  E-value: 8.33e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   220 ISPTTSEDIDELLVLLSPQSVNRASERQLADTAASALRAPSPVF--WSAFDSRYPHLAPANQSNSDPLCPETSTASAQIL 297
Cdd:PHA03307   22 PRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFepPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPA 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   298 HTNSPTPPTSTSPAPIPSPTQPPACLPSPAPISSPVQPPAllplifspitpvefiqpQSPPSPPQAPSPPAHSSSSCSPS 377
Cdd:PHA03307  102 REGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPV-----------------GSPGPPPAASPPAAGASPAAVAS 164
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 82004389   378 HLAPSPLSSSPLSSPPQLSPAPVSPPSSPPPLSPGELAPSPDPPRHSISSQPQSCPVPSLGRSADFRREVAA 449
Cdd:PHA03307  165 DAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASS 236
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
620-670 2.52e-04

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 46.32  E-value: 2.52e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 82004389   620 DDALHSESHENVLGSRGCGWGPRSECPVPPPGMVTLPSCVWEAAARLPTPA 670
Cdd:PHA03307  230 DDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSS 280
 
Name Accession Description Interval E-value
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
956-2276 0e+00

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 1068.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   956 DDGQPMFPPLPVPDWNNPSTDWRPSPPR---SGPKKDFCGDLPAPLTSGPRLTTPSSGRMSELPHTTSSPRSSPRPRGPE 1032
Cdd:PHA03307  218 SSPAPAPGRSAADDAGASSSDSSSSESSgcgWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPS 297
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1033 TSPSNehiiispPRNPPSNTTHRNVGHVSRSPSSSSSSSSSSSPSSSSLIVPSSPSSSRSPSPSPPRPRADCSSRPRRGR 1112
Cdd:PHA03307  298 PSPSS-------PGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPR 370
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1113 GSNRGGRSgPQSKGRKTSPRTRKLEDEDYLPQETANRRGGGRPRGRPPKSGravqrndiqVTSSSGLADTSPYDLCGSVW 1192
Cdd:PHA03307  371 PSRAPSSP-AASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAG---------AASGAFYARYPLLTPSGEPW 440
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1193 WEVPLPPPGRCWFGGLGGHRQALTDSPEIVEAIHRFNTSHGPVPVYVEEMKDYAKQYDALVNSLFHKSMKVNPlnWMHHG 1272
Cdd:PHA03307  441 PGSPPPPPGRVRYGGLGDSRPGLWDAPEVREAAARYEASPGPVPVYVPEMGDSAKQYAALVRLLYTPDREAMG--WLQNP 518
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1273 KLSPADAALNHIYVQKFQSsYDSPGAAVTGTVNRCIPHIAGAMKERKLLWAFPHIAASIAMTRRYCKDQKTFLFRSLKKA 1352
Cdd:PHA03307  519 KLTGPDQALDQFCQKKFQA-PRGSGSFITGSVARPVPHIGDAMAAGNALWALPHAAAAVAMSRRYDRAQKGFLLQSLRRA 597
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1353 YASMAFPDNSSETEkgisskpstspsvlittstqttapphapkidvtaihgrvyqsvvdlsrcladgslDDPEFSFAGCT 1432
Cdd:PHA03307  598 YAPMAYPENAADTG-------------------------------------------------------AGAAAPAPAAP 622
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1433 RPDCLVEEFDAARPLEELADACVLACDSVVAALLCGPDGPHRVaKMLSFYDSRITPHvpdlqQWEKCRILLVSWYHELSD 1512
Cdd:PHA03307  623 RPDAAAAGGASARPLRELADACVLACRAVLEALLEGPDGLSAV-PGLAFPRPACPPR-----ALEACPARLESWLRELRD 696
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1513 LRAAVYGAYGNT--PTSQHLDERALAARVVSLIAETIGPLVRQDPDRAWVRMGSRDITSLLLRDWRGTNdgdPGLVKAKH 1590
Cdd:PHA03307  697 LRDAVYLARLRGdlPVAGGREERVAAVRAVSLVARTVAPLVRYSPRRARARASAWDITDALFSNPSLVP---AKLAEALA 773
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1591 LRRTAELLNDGRSSkgtygvfaPPRRPDQLFRGPGRPRRSTSSSQSASDKSPIKSTHRHTSDPIPISTprperdpagtph 1670
Cdd:PHA03307  774 LLEPAEPQRGAGSS--------PPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESS------------ 833
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1671 entmsgpvqpaanghscsstptpakkgnktssdtislkdptktrikasakaqtDETLPETSTAHPSAMDQSSSLERKNLY 1750
Cdd:PHA03307  834 -----------------------------------------------------GPARPPGAAARPPPARSSESSKSKPAA 860
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1751 TGPAVSSKERRRSAQSSTPSDIGGVSRKRKSAPEQYKQGLQTPLPMPEPSVGqtlldptttthdilSSSLPnrscsssps 1830
Cdd:PHA03307  861 AGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVK--------------LGPMP--------- 917
                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1831 pskrpyhpscysptdimtgalvgPRGRQDRAAFRQFPVGTVIGQTPPQSVLNAYCPNGAFVELVEFARIPEPWQEVLRYS 1910
Cdd:PHA03307  918 -----------------------PGGPDPRGGFRRVPPGDLHTPAPSAAALAAYCPPEVVAELVDHPLFPEPWRPALAFD 974
                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1911 PEAMADIARVANALPGKYNSNEiitsaaseAFHTATSKLRARTAWMRyQQESPDDVSIVVLYSPLPGEHLFCVPAPDTPP 1990
Cdd:PHA03307  975 PEALAEIAARCGGPPPRSGSAF--------GPLRASGPLRRRAAWMR-QIPDPEDVRVVVLYSPLPGEHLFGVPAPDASP 1045
                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1991 GGLKFDNKRGGLSFLLAAFSNRLCLPKSSAWAGRWKAAPDISPLTRMGVLFLSTEDLGYQGAVEYLQRQCMKRKKKLIIM 2070
Cdd:PHA03307 1046 GGPAWSPERGGLSFLLAALGNRLCLPDSHAWAGNWTGAPDVSALNAQGVLLLSTRDLAFAGAVEYLCLRLGSARRRLIVL 1125
                        1130      1140      1150      1160      1170      1180      1190      1200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  2071 DTVEDRYRLPNGPCiIEEATRYMKCIISPRSQCCVRWPGLLDFGTTIITSRDVVGPLTLMDLEQyYYCEIGIEDSTINLC 2150
Cdd:PHA03307 1126 DTVDPEDWPADGPA-VSQYHVYLRCAVLPRAQCAVRWPAARDLARAVLTSSRVFGPGLFARVEA-AFARLYPDAPPLRLC 1203
                        1210      1220      1230      1240      1250      1260      1270      1280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  2151 CTGNVRYTVETRLEDVSCVPTTPLFYFAAV-----------------KHVRPDFLCGETYSNRAARKWGLCAPLRPIYVI 2213
Cdd:PHA03307 1204 RGANVRYTVRTRLGPRTRVPLPPREYRQAVlpaldgckdmaaqaeglGLGAPDFLEGEAHSHRAANRWGLGAPLRPVYLA 1283
                        1290      1300      1310      1320      1330      1340
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 82004389  2214 ESKMNAIVSPSFLHPTARNLCRSVILPPDPEARPVVVHIpegtcSALAEDMvaSIRSSCITWG 2276
Cdd:PHA03307 1284 EGRRAAIAGPDELPAVVRAFCRAALLEPDPEAPPLVLPP-----SAAAEAA--HARAPRVTWA 1339
Herpes_ICP4_C pfam03585
Herpesvirus ICP4-like protein C-terminal region; The immediate-early protein ICP4 ...
1861-2282 0e+00

Herpesvirus ICP4-like protein C-terminal region; The immediate-early protein ICP4 (infected-cell polypeptide 4) is required for efficient transcription of early and late viral genes and is thus essential for productive infection. ICP4 is a large phosphoprotein that binds DNA in a sequence specific manner as a homodimer. ICP4 represses transcription from LAT, ICP4 and ORF-P that have high-affinity a ICP4 binding site that spans the transcription initiation site. ICP4 proteins have two highly conserved regions, this family contains the C-terminal region that probably acts as an enhancer for the N-terminal region.


Pssm-ID: 281570  Cd Length: 444  Bit Score: 659.76  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   1861 AAFRQFPVGTVIGQTPPQSVLNAYCPNGAFVELVEFARIPEPWQEVLRYSPEAMADI-ARVANALP--GKYNSNEIITSA 1937
Cdd:pfam03585    1 GGFRRFPVGTVHTQTPPQSALNAYCPPGAFAELVDFPLFPEPWRPALRFDPEALADIaARVANALPggGDYNSNEIITSA 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   1938 ASEAFH--TATSKLRARTAWMRyQQESPDDVSIVVLYSPLPGEHLFCVPAPDTPPgglKFDNKRGGLSFLLAAFSNRLCL 2015
Cdd:pfam03585   81 ASRAFGppTATSKLRRRTAWMR-QIPDPEDVRIVVLYSPLPGEDLFCVPAPDTPP---KWSNKRGGLSFLLAALSNRLCL 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   2016 PKSSAWAGRWKAAPDISPLTRMGVLFLSTEDLGYQGAVEYLQRQCMKRKKKLIIMDTVEDRYRLPNGPCIIEEATrYMKC 2095
Cdd:pfam03585  157 PKTSAWAGNWTGAPDVSALTAMGVLLLSTRDLAFAGAVEYLGRQCMKRKRRLIVMDTVEDRYWPPDGPAISEEHT-YMKC 235
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   2096 IISPRSQCCVRWPGLLDFGTTIITSRDVVGPLTLMDLEQyYYCEIGIEDSTINLCCTGNVRYTVETRLEDVSCVPTTPLF 2175
Cdd:pfam03585  236 IISPRSQCCVRWPGLLDLGRTVIASRRVFGPLTFARLEQ-AYAELYPEDSPLNLCRGGNVRYTVETRLGPVTCVPTSPRE 314
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   2176 YFAAVKHV-----------------RPDFLCGETYSNRAARKWGLCAPLRPIYVIESKMNAIVSPSFLH-PTARNLCRSV 2237
Cdd:pfam03585  315 YRAAVLPVfdgckdlarqsrglglgAPDFLCEEAHSHRAARRWGLGAPLRPVYVIEGRMNAIAGPSFLHvPTARNFCRSA 394
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|
gi 82004389   2238 ILPPDPEARPVVVHIPEGTCSALAEDMVASIRSSC--ITWGQ---HEEGG 2282
Cdd:pfam03585  395 LLEPDPEARPLVLHIPEGTCSALAEDMVASALPPCprITWGQgfgHEEGG 444
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
220-449 8.33e-10

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 64.42  E-value: 8.33e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   220 ISPTTSEDIDELLVLLSPQSVNRASERQLADTAASALRAPSPVF--WSAFDSRYPHLAPANQSNSDPLCPETSTASAQIL 297
Cdd:PHA03307   22 PRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFepPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPA 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   298 HTNSPTPPTSTSPAPIPSPTQPPACLPSPAPISSPVQPPAllplifspitpvefiqpQSPPSPPQAPSPPAHSSSSCSPS 377
Cdd:PHA03307  102 REGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPV-----------------GSPGPPPAASPPAAGASPAAVAS 164
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 82004389   378 HLAPSPLSSSPLSSPPQLSPAPVSPPSSPPPLSPGELAPSPDPPRHSISSQPQSCPVPSLGRSADFRREVAA 449
Cdd:PHA03307  165 DAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASS 236
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
620-670 2.52e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 46.32  E-value: 2.52e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 82004389   620 DDALHSESHENVLGSRGCGWGPRSECPVPPPGMVTLPSCVWEAAARLPTPA 670
Cdd:PHA03307  230 DDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSS 280
 
Name Accession Description Interval E-value
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
956-2276 0e+00

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 1068.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   956 DDGQPMFPPLPVPDWNNPSTDWRPSPPR---SGPKKDFCGDLPAPLTSGPRLTTPSSGRMSELPHTTSSPRSSPRPRGPE 1032
Cdd:PHA03307  218 SSPAPAPGRSAADDAGASSSDSSSSESSgcgWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPS 297
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1033 TSPSNehiiispPRNPPSNTTHRNVGHVSRSPSSSSSSSSSSSPSSSSLIVPSSPSSSRSPSPSPPRPRADCSSRPRRGR 1112
Cdd:PHA03307  298 PSPSS-------PGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPR 370
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1113 GSNRGGRSgPQSKGRKTSPRTRKLEDEDYLPQETANRRGGGRPRGRPPKSGravqrndiqVTSSSGLADTSPYDLCGSVW 1192
Cdd:PHA03307  371 PSRAPSSP-AASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAG---------AASGAFYARYPLLTPSGEPW 440
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1193 WEVPLPPPGRCWFGGLGGHRQALTDSPEIVEAIHRFNTSHGPVPVYVEEMKDYAKQYDALVNSLFHKSMKVNPlnWMHHG 1272
Cdd:PHA03307  441 PGSPPPPPGRVRYGGLGDSRPGLWDAPEVREAAARYEASPGPVPVYVPEMGDSAKQYAALVRLLYTPDREAMG--WLQNP 518
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1273 KLSPADAALNHIYVQKFQSsYDSPGAAVTGTVNRCIPHIAGAMKERKLLWAFPHIAASIAMTRRYCKDQKTFLFRSLKKA 1352
Cdd:PHA03307  519 KLTGPDQALDQFCQKKFQA-PRGSGSFITGSVARPVPHIGDAMAAGNALWALPHAAAAVAMSRRYDRAQKGFLLQSLRRA 597
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1353 YASMAFPDNSSETEkgisskpstspsvlittstqttapphapkidvtaihgrvyqsvvdlsrcladgslDDPEFSFAGCT 1432
Cdd:PHA03307  598 YAPMAYPENAADTG-------------------------------------------------------AGAAAPAPAAP 622
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1433 RPDCLVEEFDAARPLEELADACVLACDSVVAALLCGPDGPHRVaKMLSFYDSRITPHvpdlqQWEKCRILLVSWYHELSD 1512
Cdd:PHA03307  623 RPDAAAAGGASARPLRELADACVLACRAVLEALLEGPDGLSAV-PGLAFPRPACPPR-----ALEACPARLESWLRELRD 696
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1513 LRAAVYGAYGNT--PTSQHLDERALAARVVSLIAETIGPLVRQDPDRAWVRMGSRDITSLLLRDWRGTNdgdPGLVKAKH 1590
Cdd:PHA03307  697 LRDAVYLARLRGdlPVAGGREERVAAVRAVSLVARTVAPLVRYSPRRARARASAWDITDALFSNPSLVP---AKLAEALA 773
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1591 LRRTAELLNDGRSSkgtygvfaPPRRPDQLFRGPGRPRRSTSSSQSASDKSPIKSTHRHTSDPIPISTprperdpagtph 1670
Cdd:PHA03307  774 LLEPAEPQRGAGSS--------PPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESS------------ 833
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1671 entmsgpvqpaanghscsstptpakkgnktssdtislkdptktrikasakaqtDETLPETSTAHPSAMDQSSSLERKNLY 1750
Cdd:PHA03307  834 -----------------------------------------------------GPARPPGAAARPPPARSSESSKSKPAA 860
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1751 TGPAVSSKERRRSAQSSTPSDIGGVSRKRKSAPEQYKQGLQTPLPMPEPSVGqtlldptttthdilSSSLPnrscsssps 1830
Cdd:PHA03307  861 AGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVK--------------LGPMP--------- 917
                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1831 pskrpyhpscysptdimtgalvgPRGRQDRAAFRQFPVGTVIGQTPPQSVLNAYCPNGAFVELVEFARIPEPWQEVLRYS 1910
Cdd:PHA03307  918 -----------------------PGGPDPRGGFRRVPPGDLHTPAPSAAALAAYCPPEVVAELVDHPLFPEPWRPALAFD 974
                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1911 PEAMADIARVANALPGKYNSNEiitsaaseAFHTATSKLRARTAWMRyQQESPDDVSIVVLYSPLPGEHLFCVPAPDTPP 1990
Cdd:PHA03307  975 PEALAEIAARCGGPPPRSGSAF--------GPLRASGPLRRRAAWMR-QIPDPEDVRVVVLYSPLPGEHLFGVPAPDASP 1045
                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1991 GGLKFDNKRGGLSFLLAAFSNRLCLPKSSAWAGRWKAAPDISPLTRMGVLFLSTEDLGYQGAVEYLQRQCMKRKKKLIIM 2070
Cdd:PHA03307 1046 GGPAWSPERGGLSFLLAALGNRLCLPDSHAWAGNWTGAPDVSALNAQGVLLLSTRDLAFAGAVEYLCLRLGSARRRLIVL 1125
                        1130      1140      1150      1160      1170      1180      1190      1200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  2071 DTVEDRYRLPNGPCiIEEATRYMKCIISPRSQCCVRWPGLLDFGTTIITSRDVVGPLTLMDLEQyYYCEIGIEDSTINLC 2150
Cdd:PHA03307 1126 DTVDPEDWPADGPA-VSQYHVYLRCAVLPRAQCAVRWPAARDLARAVLTSSRVFGPGLFARVEA-AFARLYPDAPPLRLC 1203
                        1210      1220      1230      1240      1250      1260      1270      1280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  2151 CTGNVRYTVETRLEDVSCVPTTPLFYFAAV-----------------KHVRPDFLCGETYSNRAARKWGLCAPLRPIYVI 2213
Cdd:PHA03307 1204 RGANVRYTVRTRLGPRTRVPLPPREYRQAVlpaldgckdmaaqaeglGLGAPDFLEGEAHSHRAANRWGLGAPLRPVYLA 1283
                        1290      1300      1310      1320      1330      1340
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 82004389  2214 ESKMNAIVSPSFLHPTARNLCRSVILPPDPEARPVVVHIpegtcSALAEDMvaSIRSSCITWG 2276
Cdd:PHA03307 1284 EGRRAAIAGPDELPAVVRAFCRAALLEPDPEAPPLVLPP-----SAAAEAA--HARAPRVTWA 1339
Herpes_ICP4_C pfam03585
Herpesvirus ICP4-like protein C-terminal region; The immediate-early protein ICP4 ...
1861-2282 0e+00

Herpesvirus ICP4-like protein C-terminal region; The immediate-early protein ICP4 (infected-cell polypeptide 4) is required for efficient transcription of early and late viral genes and is thus essential for productive infection. ICP4 is a large phosphoprotein that binds DNA in a sequence specific manner as a homodimer. ICP4 represses transcription from LAT, ICP4 and ORF-P that have high-affinity a ICP4 binding site that spans the transcription initiation site. ICP4 proteins have two highly conserved regions, this family contains the C-terminal region that probably acts as an enhancer for the N-terminal region.


Pssm-ID: 281570  Cd Length: 444  Bit Score: 659.76  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   1861 AAFRQFPVGTVIGQTPPQSVLNAYCPNGAFVELVEFARIPEPWQEVLRYSPEAMADI-ARVANALP--GKYNSNEIITSA 1937
Cdd:pfam03585    1 GGFRRFPVGTVHTQTPPQSALNAYCPPGAFAELVDFPLFPEPWRPALRFDPEALADIaARVANALPggGDYNSNEIITSA 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   1938 ASEAFH--TATSKLRARTAWMRyQQESPDDVSIVVLYSPLPGEHLFCVPAPDTPPgglKFDNKRGGLSFLLAAFSNRLCL 2015
Cdd:pfam03585   81 ASRAFGppTATSKLRRRTAWMR-QIPDPEDVRIVVLYSPLPGEDLFCVPAPDTPP---KWSNKRGGLSFLLAALSNRLCL 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   2016 PKSSAWAGRWKAAPDISPLTRMGVLFLSTEDLGYQGAVEYLQRQCMKRKKKLIIMDTVEDRYRLPNGPCIIEEATrYMKC 2095
Cdd:pfam03585  157 PKTSAWAGNWTGAPDVSALTAMGVLLLSTRDLAFAGAVEYLGRQCMKRKRRLIVMDTVEDRYWPPDGPAISEEHT-YMKC 235
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   2096 IISPRSQCCVRWPGLLDFGTTIITSRDVVGPLTLMDLEQyYYCEIGIEDSTINLCCTGNVRYTVETRLEDVSCVPTTPLF 2175
Cdd:pfam03585  236 IISPRSQCCVRWPGLLDLGRTVIASRRVFGPLTFARLEQ-AYAELYPEDSPLNLCRGGNVRYTVETRLGPVTCVPTSPRE 314
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   2176 YFAAVKHV-----------------RPDFLCGETYSNRAARKWGLCAPLRPIYVIESKMNAIVSPSFLH-PTARNLCRSV 2237
Cdd:pfam03585  315 YRAAVLPVfdgckdlarqsrglglgAPDFLCEEAHSHRAARRWGLGAPLRPVYVIEGRMNAIAGPSFLHvPTARNFCRSA 394
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|
gi 82004389   2238 ILPPDPEARPVVVHIPEGTCSALAEDMVASIRSSC--ITWGQ---HEEGG 2282
Cdd:pfam03585  395 LLEPDPEARPLVLHIPEGTCSALAEDMVASALPPCprITWGQgfgHEEGG 444
Herpes_ICP4_N pfam03584
Herpesvirus ICP4-like protein N-terminal region; The immediate-early protein ICP4 ...
1197-1362 1.37e-87

Herpesvirus ICP4-like protein N-terminal region; The immediate-early protein ICP4 (infected-cell polypeptide 4) is required for efficient transcription of early and late viral genes and is thus essential for productive infection. ICP4 is a large phosphoprotein that binds DNA in a sequence specific manner as a homodimer. ICP4 represses transcription from LAT, ICP4 and ORF-P that have high-affinity a ICP4 binding site that spans the transcription initiation site. ICP4 proteins have two highly conserved regions, this family contains the N-terminal region that contains sites for DNA binding and homodimerization.


Pssm-ID: 367571 [Multi-domain]  Cd Length: 163  Bit Score: 282.49  E-value: 1.37e-87
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   1197 LPPPGRCWFGGLGGHRQALTDSPEIVEAIHRFNTSHGPVPVYVEEMKDYAKQYDALVNSLFhkSMKVNPLNWMHHGKLSP 1276
Cdd:pfam03584    1 PPPPGRVLYGGLGDSRPGLWGAPEVREARARFEASGAPAPVYVPELGDAAQQYAALVNLLY--TPDAEPLGWLQNPRLNP 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   1277 ADAALNHIYvQKFQSSYDSPGAAVTGTVNRCIPHIAGAMKERKLLWAFPHIAASIAMTRRYCKDQKTFLFRSLKKAYASM 1356
Cdd:pfam03584   79 GDVALNQIC-QKISGAARNSGSAVTGSVARAVPHIGYAMAAGRALWALPHAAAAVAMSRRYDRAQKTFLLTSLRRAYAPL 157

                   ....*.
gi 82004389   1357 AFPDNS 1362
Cdd:pfam03584  158 AFPENA 163
PHA03308 PHA03308
transcriptional regulator ICP4; Provisional
1195-1359 1.98e-15

transcriptional regulator ICP4; Provisional


Pssm-ID: 165563 [Multi-domain]  Cd Length: 1463  Bit Score: 82.93  E-value: 1.98e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1195 VPLPPP-GRCWFGGlgGHRQALTDSPEIVEAIHRFNTSHGPVPVYVEEMKDYAKQYDALVNSLFhksmkVNPLNWMHHG- 1272
Cdd:PHA03308  355 IPSPPSrGQVYHGS--GYRQSLVDDPQVREAAAEFHANPKSASVYLEEYGMPVEQLERLVEEFM-----VHPLSRVSYGy 427
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1273 ---KLSPADAALNHIYVQKFQSSydSPGAAVTGTVNRCIPHIAGAMKERKLLWAFPHIAASIAMTRRYCKDQKTFLFRSL 1349
Cdd:PHA03308  428 ggpKLSPRDKRLCELCALRGPGS--SEGGLSRSAVPTCLPHVAHAMRDGRVSLALPHLTELVRVCRRYDHPQKTYLLAAL 505
                         170
                  ....*....|
gi 82004389  1350 KKAYASMAFP 1359
Cdd:PHA03308  506 RRAFVPFVFP 515
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
220-449 8.33e-10

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 64.42  E-value: 8.33e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   220 ISPTTSEDIDELLVLLSPQSVNRASERQLADTAASALRAPSPVF--WSAFDSRYPHLAPANQSNSDPLCPETSTASAQIL 297
Cdd:PHA03307   22 PRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFepPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPA 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   298 HTNSPTPPTSTSPAPIPSPTQPPACLPSPAPISSPVQPPAllplifspitpvefiqpQSPPSPPQAPSPPAHSSSSCSPS 377
Cdd:PHA03307  102 REGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPV-----------------GSPGPPPAASPPAAGASPAAVAS 164
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 82004389   378 HLAPSPLSSSPLSSPPQLSPAPVSPPSSPPPLSPGELAPSPDPPRHSISSQPQSCPVPSLGRSADFRREVAA 449
Cdd:PHA03307  165 DAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASS 236
PHA03309 PHA03309
transcriptional regulator ICP4; Provisional
1195-1377 8.27e-09

transcriptional regulator ICP4; Provisional


Pssm-ID: 165564 [Multi-domain]  Cd Length: 2033  Bit Score: 61.41  E-value: 8.27e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1195 VPLPPPGRCWFGGLGGHRQALTDSPEIVEAIHRFNTSHGPVPVYVEEMKDYAKQYDALVNSLFhksmkVNPLNWMHHG-- 1272
Cdd:PHA03309  629 LPKPPAADYVYYGKTGYRPSMAAHPDVRRAAEEFSASDAAARVYVEEFGMAVEQHERLVAEFM-----LQPLSRVSHSyg 703
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389  1273 --KLSPADAALNHIYVQKFQSSYDSPGAAVTG------------TVNRCIPHIAGAMKERKLLWAFPHIAASIAMTRRYC 1338
Cdd:PHA03309  704 gsRLNKTEKNLCKICLPPDGGDDRDGGGKSRGgrgggskdasrtAMATGVPHIVHAMRDGRAALALPHLMDVIRVCRRYD 783
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 82004389  1339 KDQKTFLFRSLKKAYASMAFPDNSSETEKGISSKPsTSP 1377
Cdd:PHA03309  784 ASQKTYLLSCLRLAFAPLVFPGASPPVGADDSPWP-TSP 821
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
1-337 5.21e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 48.63  E-value: 5.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389     1 MDNPPDFDSLLAAFDEDVGIFPHTPATPGDpyqgvslqtpcvpvpslagqsgtyrphssyhgqrslssgpvpAAHSPRSG 80
Cdd:PHA03307    1 SDNAPDLYDLIEAAAEGGEFFPRPPATPGD------------------------------------------AADDLLSG 38
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389    81 RPGQHSTSNGVAAAAPPAATRAVCDTAGPTTD-TSSNRPGGRNSSNGADESGESSSDRSPSYSPCDSYCDPDRVSS---Y 156
Cdd:PHA03307   39 SQGQLVSDSAELAAVTVVAGAAACDRFEPPTGpPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPdppP 118
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   157 RSSVDGSPE----SGDIESASGSGGTSSPPLLEILAADFGEDTKALDPdyylrADPRFKAYFYGMDEISPTTSEDIDELL 232
Cdd:PHA03307  119 PTPPPASPPpspaPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDA-----ASSRQAALPLSSPEETARAPSSPPAEP 193
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 82004389   233 VLLSPQSVNRASERQLADTAASALRAPSPVFWSAFDSRYPHLAPANQSNSDPLC---PETST----ASAQILHTNSPTPP 305
Cdd:PHA03307  194 PPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCgwgPENECplprPAPITLPTRIWEAS 273
                         330       340       350
                  ....*....|....*....|....*....|..
gi 82004389   306 TSTSPAPIPSPTQPPACLPSPAPISSPVQPPA 337
Cdd:PHA03307  274 GWNGPSSRPGPASSSSSPRERSPSPSPSSPGS 305
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
620-670 2.52e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 46.32  E-value: 2.52e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 82004389   620 DDALHSESHENVLGSRGCGWGPRSECPVPPPGMVTLPSCVWEAAARLPTPA 670
Cdd:PHA03307  230 DDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSS 280
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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