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Conserved domains on  [gi|1942250079|gb|QPP20624|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Phalanger sericeus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-320 1.21e-156

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 441.98  E-value: 1.21e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   1 ILLGTSLTLFSSHWLTAWMGLEINTLAIIPIMTYPNHPRATESAIKYFLTQTTASMMLMFAIINNAWMTNQWALSQISDQ 80
Cdd:MTH00105   13 LFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNP 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  81 TSSTIMTLALAMKLGLAPFHFWVPEVTQGIPLTSGMILLTWQKIAPMSLMYQISPSLNMKILITMALLSTVLGGWGGLNQ 160
Cdd:MTH00105   93 TASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQ 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 161 IHLRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITTTLTLFLALNHSSTTKIKSLANLWNKSTPMTIVIIITLLSLG 240
Cdd:MTH00105  173 TQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLG 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 241 GLPPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRIIYTTTLTMFPSTNNSKLQWHHQQTKTTNIIPPLTII 320
Cdd:MTH00105  253 GLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTKPMTLLPTLIIL 332
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-320 1.21e-156

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 441.98  E-value: 1.21e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   1 ILLGTSLTLFSSHWLTAWMGLEINTLAIIPIMTYPNHPRATESAIKYFLTQTTASMMLMFAIINNAWMTNQWALSQISDQ 80
Cdd:MTH00105   13 LFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNP 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  81 TSSTIMTLALAMKLGLAPFHFWVPEVTQGIPLTSGMILLTWQKIAPMSLMYQISPSLNMKILITMALLSTVLGGWGGLNQ 160
Cdd:MTH00105   93 TASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQ 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 161 IHLRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITTTLTLFLALNHSSTTKIKSLANLWNKSTPMTIVIIITLLSLG 240
Cdd:MTH00105  173 TQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLG 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 241 GLPPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRIIYTTTLTMFPSTNNSKLQWHHQQTKTTNIIPPLTII 320
Cdd:MTH00105  253 GLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTKPMTLLPTLIIL 332
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 11-274 5.69e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 96.61  E-value: 5.69e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  11 SSHWLTAWMGLEINTLAIIPIMTY-PNHPRATESAIKYFLTQTTASMMLMFAIINNAWMTNQWALSQISDQTSSTI---- 85
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYwGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  86 -------MTLALAMKLGLAPFHFWVPEVTQGIPLTSGMILL-TWQKIAP-----MSLMYQISPSLNMKILITMALLSTVL 152
Cdd:pfam00361  81 llllfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 153 GGWGGLNQIHLRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITT---------TLTLFLALNHSSTTKIKSLANLWN 223
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLThglfsaglfLCAGSVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1942250079 224 KSTPMTIVIIITLLSLGGLPPLTGFSPKWLILQELITHNNITMATIMAMST 274
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 2-286 7.25e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 98.65  E-value: 7.25e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   2 LLGTSLTLFSSHWLTAWMGLEINTLAI-IPIMTYPNHPRATESAIKYFLTQTTASMMLMFAIinnAWM---TNQWALSQI 77
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGI---SLLygaTGSLNLAGI 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  78 S-----DQTSSTIMTLALAM-------KLGLAPFHFWVPEVTQGIPLTSGMILLTWQKIAPMS----LMYQISPSLNM-- 139
Cdd:COG1007   189 AaalaaGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAallrLLVEAFPGLAAdw 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 140 -KILITMALLSTVLGGWGGLNQIHLRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITT---------TLTLFLALNH 209
Cdd:COG1007   269 qLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAylfmnlgafAVILLLSRKG 348

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1942250079 210 SSTTKIKSLANLWNKSTPMTIVIIITLLSLGGLPPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRIIY 286
Cdd:COG1007   349 GEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-285 2.48e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 82.30  E-value: 2.48e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   1 ILLGTSLTLFSSHWLTAWMGLEINTLAIIPIMTY-PNHPRATESAIKYFLTQTTASMMLMFAIINNAWMTNQWALSQISD 79
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGLkRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  80 QTSST------------IMTLALAMKLGLAPFHFWVPEVTQGIPLTSGMILLTWQKIAPMSLMYQISPSL-------NMK 140
Cdd:TIGR01770 191 FLSNGmlnisllllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQI 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 141 ILITMALLSTVLGGWGGLNQIHLRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITT----------TLTLFLALNHS 210
Cdd:TIGR01770 271 FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIyalmslgafgVLSLLRSYKDE 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1942250079 211 STTKIKSLANLWNKSTPMTIVIIITLLSLGGLPPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRII 285
Cdd:TIGR01770 351 WIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-320 1.21e-156

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 441.98  E-value: 1.21e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   1 ILLGTSLTLFSSHWLTAWMGLEINTLAIIPIMTYPNHPRATESAIKYFLTQTTASMMLMFAIINNAWMTNQWALSQISDQ 80
Cdd:MTH00105   13 LFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNP 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  81 TSSTIMTLALAMKLGLAPFHFWVPEVTQGIPLTSGMILLTWQKIAPMSLMYQISPSLNMKILITMALLSTVLGGWGGLNQ 160
Cdd:MTH00105   93 TASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQ 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 161 IHLRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITTTLTLFLALNHSSTTKIKSLANLWNKSTPMTIVIIITLLSLG 240
Cdd:MTH00105  173 TQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLG 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 241 GLPPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRIIYTTTLTMFPSTNNSKLQWHHQQTKTTNIIPPLTII 320
Cdd:MTH00105  253 GLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTKPMTLLPTLIIL 332
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 3-311 1.49e-122

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 355.65  E-value: 1.49e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   3 LGTSLTLFSSHWLTAWMGLEINTLAIIPIMTYPNHPRATESAIKYFLTQTTASMMLMFAIINNAWMTNQWALSQISDQTS 82
Cdd:MTH00135   15 LGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLP 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  83 STIMTLALAMKLGLAPFHFWVPEVTQGIPLTSGMILLTWQKIAPMSLMYQISPSlNMKILITMALLSTVLGGWGGLNQIH 162
Cdd:MTH00135   95 TTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQ 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 163 LRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITTTLTLFLALNHSSTTKIKSLANLWNKSTPMTIVIIITLLSLGGL 242
Cdd:MTH00135  174 LRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGL 253

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1942250079 243 PPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRIIYTTTLTMFPSTNNSKLQWHHQQTKTT 311
Cdd:MTH00135  254 PPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLT 322
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-313 3.90e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 331.79  E-value: 3.90e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   1 ILLGTSLTLFSSHWLTAWMGLEINTLAIIPIMTYPNHPRATESAIKYFLTQTTASMMLMFAIINNAWMTNQWALSQISDQ 80
Cdd:MTH00112   13 LILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNP 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  81 TSSTIMTLALAMKLGLAPFHFWVPEVTQGIPLTSGMILLTWQKIAPMSLMYQISPSLNMKILITMALLSTVLGGWGGLNQ 160
Cdd:MTH00112   93 TSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQ 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 161 IHLRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITTTLTLFLALNHSSTTKIKSLANLWNKSTPMTIVIIITLLSLG 240
Cdd:MTH00112  173 TQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLA 252

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1942250079 241 GLPPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRIIYTTTLTMFPSTNNSKLQWHHQQTKTTNI 313
Cdd:MTH00112  253 GLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLT 325
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 3-320 1.89e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 329.96  E-value: 1.89e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   3 LGTSLTLFSSHWLTAWMGLEINTLAIIPIMTYPNHPRATESAIKYFLTQTTASMMLMFAIINNAWMTNQWALSQISDQTS 82
Cdd:MTH00070   15 LGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLP 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  83 STIMTLALAMKLGLAPFHFWVPEVTQGIPLTSGMILLTWQKIAPMSLMYQISPSLNMKILITMALLSTVLGGWGGLNQIH 162
Cdd:MTH00070   95 TIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQ 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 163 LRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITTTLTLFLALNHSSTTKIKSLANLWNKSTPMTIVIIITLLSLGGL 242
Cdd:MTH00070  175 LRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGL 254

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1942250079 243 PPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRIIYTTTLTMFPSTNNSKLQWHHqQTKTTNIIPPLTII 320
Cdd:MTH00070  255 PPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRF-KNKTNNLLSLTIIL 331
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-303 3.18e-85

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 260.67  E-value: 3.18e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   1 ILLGTSLTLFSSHWLTAWMGLEINTLAIIPIMTYPNHPRATESAIKYFLTQTTASMMLMFAIINNAWMTNQWALSQISDQ 80
Cdd:MTH00200   13 LGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGP 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  81 TSSTIMTLALAMKLGLAPFHFWVPEVTQGIPLTSGMILLTWQKIAPMSLMYQISPSLNMKILITMALLSTVLGGWGGLNQ 160
Cdd:MTH00200   93 LSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQ 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 161 IHLRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITTTLTLFLALNHSSTTKIKSLANLWNKSTPMTIVIIITLLSLG 240
Cdd:MTH00200  173 TQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLG 252

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1942250079 241 GLPPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRIIYTTTLTMFPSTNNSKLQW 303
Cdd:MTH00200  253 GLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSW 315
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-294 2.30e-79

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 245.61  E-value: 2.30e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   1 ILLGTSLTLFSSHWLTAWMGLEINTLAIIPIMTYPNHPRATESAIKYFLTQTTASMMLMFAIINNAWMTNQWALSQISDQ 80
Cdd:MTH00041   13 IILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNT 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  81 TSSTIMTLALAMKLGLAPFHFWVPEVTQGIPLTSGMILLTWQKIAPMSLMYQISPSLNMKILITMALLSTVLGGWGGLNQ 160
Cdd:MTH00041   93 LSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQ 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 161 IHLRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITTTLTLFLALNHSSTTKIKSLANLWNKSTPMTIVIIITLLSLG 240
Cdd:MTH00041  173 TQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLG 252

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1942250079 241 GLPPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRIIYTTTLTMFP 294
Cdd:MTH00041  253 GLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFP 306
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-303 3.28e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 182.78  E-value: 3.28e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   1 ILLGTSLTLFSSHWLTAWMGLEINTLAIIPIMTYPNHPRATESAIKYFLTQTTASMMLMFAIINNAWMTNQWAlsqisdq 80
Cdd:MTH00144   13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF------- 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  81 tSSTIMTLALAMKLGLAPFHFWVPEVTQGIPLTSGMILLTWQKIAPMSLMYQISPSLNM-KILITMALLSTVLGGWGGLN 159
Cdd:MTH00144   86 -SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLN 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 160 QIHLRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITTTLTLFLALNHSSTTKIKSLANLwNKSTPMTIVIIITLLSL 239
Cdd:MTH00144  165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSIISLLLSL 243

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1942250079 240 GGLPPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRIIYTTTLTMFPSTNNSKLQW 303
Cdd:MTH00144  244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-300 2.99e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 177.71  E-value: 2.99e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   1 ILLGTSLTLFSSHWLTAWMGLEINTLAIIPIMTYPNHPRATESAIKYFLTQTTASMMLMFAIINNAWMTNqwalsqISDQ 80
Cdd:MTH00160   14 LIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLM------LFNN 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  81 TSSTIMTLALAMKLGLAPFHFWVPEVTQGIPLTSGMILLTWQKIAPMSLMYQIspsLNMKILITMALLSTVLGGWGGLNQ 160
Cdd:MTH00160   88 ISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIGAIGGLNQ 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 161 IHLRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITTTLTLFLALNHSSTTKIKSLANLWNKSTPMTIVIIITLLSLG 240
Cdd:MTH00160  165 TSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLG 244

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 241 GLPPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRIIYTTTLTMFPSTNNSK 300
Cdd:MTH00160  245 GLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNL 304
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 3-292 4.94e-41

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 145.69  E-value: 4.94e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   3 LGTSLTLFSSHWLTAWMGLEINTLAIIPIMTYPNHPRATESAIKYFLTQTTASMMLMFAiinnawMTNQWALSQISDQTS 82
Cdd:MTH00011   17 LGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLG------MTMMWSFPSLLKNIT 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  83 STIMTLALAMKLGLAPFHFWVPEVTQGIPLTSGMILLTWQKIAPMSLMYQISPSLNMKILITMALLSTVLGGWGGLNQIH 162
Cdd:MTH00011   91 ALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQ 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 163 LRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITTTLTLFLALNHSSTTKIKSLANLWNKSTPMTIVIIITLLSLGGL 242
Cdd:MTH00011  171 LRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGL 250

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1942250079 243 PPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRIIYTTTLTM 292
Cdd:MTH00011  251 PPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLS 300
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-288 2.79e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 135.57  E-value: 2.79e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   1 ILLGTSLTLFSSHWLTAWMGLEINTLAIIPIMTYPNHPRATESAIKYFLTQTTASMMLMfaiinnawMTNQWALSQISDQ 80
Cdd:MTH00197    7 IFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLL--------MGGSLSFSNLYLS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  81 TSSTIMT-LALAMKLGLAPFHFWVPEVTQGIPLTSGMILLTWQKIAPMSLMYQISPslNMKILITMALLSTVLGGWGGLN 159
Cdd:MTH00197   79 LLSVVLViLGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMN 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 160 QIHLRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITTTLTLFLALNHSSTTKIKSLANLWNKSTPMTIVIIITLLSL 239
Cdd:MTH00197  157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1942250079 240 GGLPPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRIIYTT 288
Cdd:MTH00197  237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKS 285
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 1-285 1.87e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 102.03  E-value: 1.87e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   1 ILLGTSLTLFSSHWLTAWMGLEINTLAI-IPIMTYPNHPRATESAIKYFLTQTTASMMLMFAI-------------INNA 66
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCallcgttgglhlsYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  67 WMTNQWALSQISDQTSSTIMTLALAMKLGLAPFHFWVPEVTQGIPLTSGMILLTWQKIAPMSLMYQISPSLNMkiLITMA 146
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNI--LLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 147 LLSTVLGGWGGLNQIHLRKILAYSSITHMGWMIIIILINP----TLTLLNLFIYITTTLTLFLALNHSSTTK--IKSLAN 220
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1942250079 221 LWNKSTPMTIVIIITLLSLGGLPPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRII 285
Cdd:MTH00196  240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 11-274 5.69e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 96.61  E-value: 5.69e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  11 SSHWLTAWMGLEINTLAIIPIMTY-PNHPRATESAIKYFLTQTTASMMLMFAIINNAWMTNQWALSQISDQTSSTI---- 85
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYwGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  86 -------MTLALAMKLGLAPFHFWVPEVTQGIPLTSGMILL-TWQKIAP-----MSLMYQISPSLNMKILITMALLSTVL 152
Cdd:pfam00361  81 llllfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 153 GGWGGLNQIHLRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITT---------TLTLFLALNHSSTTKIKSLANLWN 223
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLThglfsaglfLCAGSVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1942250079 224 KSTPMTIVIIITLLSLGGLPPLTGFSPKWLILQELITHNNITMATIMAMST 274
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 2-286 7.25e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 98.65  E-value: 7.25e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   2 LLGTSLTLFSSHWLTAWMGLEINTLAI-IPIMTYPNHPRATESAIKYFLTQTTASMMLMFAIinnAWM---TNQWALSQI 77
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGI---SLLygaTGSLNLAGI 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  78 S-----DQTSSTIMTLALAM-------KLGLAPFHFWVPEVTQGIPLTSGMILLTWQKIAPMS----LMYQISPSLNM-- 139
Cdd:COG1007   189 AaalaaGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAallrLLVEAFPGLAAdw 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 140 -KILITMALLSTVLGGWGGLNQIHLRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITT---------TLTLFLALNH 209
Cdd:COG1007   269 qLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAylfmnlgafAVILLLSRKG 348

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1942250079 210 SSTTKIKSLANLWNKSTPMTIVIIITLLSLGGLPPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRIIY 286
Cdd:COG1007   349 GEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
2-285 3.97e-21

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 93.35  E-value: 3.97e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   2 LLGTSLTLFSSHWLTAWMGLEINTLAIIPIMTYPN-HPRATESAIKYFLTQTTASMMLMFAIINNAWMTNQWALSQISDQ 80
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAALRRdRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  81 TSSTI------------MTLALAMKLGLAPFHFWVPEVTQGIPLTSGMILLTWQKIAPMSLM----YQISPSLNMK---I 141
Cdd:PRK05777  193 LADGSgnsllllfglvfLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllVVAFGGLSEDwqqV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 142 LITMALLSTVLGGWGGLNQIHLRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITT---------TLTLFLALNHSST 212
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAylfmtlgafGVISLLRRKGGEA 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1942250079 213 TKIKSLANLWNKSTPMTIVIIITLLSLGGLPPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRII 285
Cdd:PRK05777  353 ESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVI 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 1-286 1.16e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 86.22  E-value: 1.16e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   1 ILLGTSLTLFSSHWLTAWMGLEINTLAI-IPIMTYPNHPRATESAIKYFLTQTTASMMLMFAIINNAWMTNQWALSQISD 79
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  80 QTSSTI----MTLALAMKLGLAPFHFWVPEVTQGIPLTSGMILLTWQKIAPMSLMYQISPSLNmkILITMALLSTVLGGW 155
Cdd:MTH00199  186 ILTGDVgkilITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAI 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 156 GGLNQIHLRKILAYSSITHMGWMIIIILINP----TLTLLNLFIYITTTLTLFLALNHSSTTK--IKSLANLWNKSTPMT 229
Cdd:MTH00199  264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRKNPVIA 343

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1942250079 230 IVIIITLLSLGGLPPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRIIY 286
Cdd:MTH00199  344 LTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQ 400
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-285 2.48e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 82.30  E-value: 2.48e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   1 ILLGTSLTLFSSHWLTAWMGLEINTLAIIPIMTY-PNHPRATESAIKYFLTQTTASMMLMFAIINNAWMTNQWALSQISD 79
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGLkRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  80 QTSST------------IMTLALAMKLGLAPFHFWVPEVTQGIPLTSGMILLTWQKIAPMSLMYQISPSL-------NMK 140
Cdd:TIGR01770 191 FLSNGmlnisllllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQI 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 141 ILITMALLSTVLGGWGGLNQIHLRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITT----------TLTLFLALNHS 210
Cdd:TIGR01770 271 FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIyalmslgafgVLSLLRSYKDE 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1942250079 211 STTKIKSLANLWNKSTPMTIVIIITLLSLGGLPPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRII 285
Cdd:TIGR01770 351 WIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 2-288 3.77e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 75.57  E-value: 3.77e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   2 LLGTSLTLFSSHWLTAWMGLEINTLAIIPIMTYPNHPRATESAIKYFLTQTTASMMLMFAII---------NNAWMTNQW 72
Cdd:COG0651   117 LAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGllygatgtlNMADLAARL 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  73 A-LSQISDQTSSTIMTLALAMKLGLAPFHFWVPE--------VT---QGIPLTSGM--ILLTWQKIAPMSLMYQISPsln 138
Cdd:COG0651   197 AeLDPGLLLAAFALLLVGFGIKAALFPLHFWLPDaypaapspVSallSGLLTKVGVyaILRVLTLLFGADPALFLGT--- 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 139 mkILITMALLSTVLGGWGGLNQIHLRKILAYSSITHMGWMI--------------IIILINPTLTLLNLFIyitttlTLF 204
Cdd:COG0651   274 --LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILlglglgtplglagaLFHLLNHALAKALLFL------AAG 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 205 LALNHSSTTKIKSLANLWNKSTPMTIVIIITLLSLGGLPPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRI 284
Cdd:COG0651   346 AIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425


                  ....
gi 1942250079 285 IYTT 288
Cdd:COG0651   426 FGRA 429
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-180 2.85e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 73.35  E-value: 2.85e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   3 LGTSLTLFSSHWLTAWMGLEINTLAIIPIMTYPNHPRAT---------ESAIKYFLTQTTASMMLMFAIINNAWMT-NQW 72
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTgNEG 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  73 ALSQISDQTSST-------------IMTLALAMKLGLAPFHFWVPEVTQGIPLTSGMILLTWQKIAPMSLMyqISPSLNM 139
Cdd:MTH00198  279 MLGTILSATLETtnielrqgslgylFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITS 356

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1942250079 140 KILITMALLSTVLGGWGGLNQIHLRKILAYSSITHMGWMII 180
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 21-287 3.95e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 57.41  E-value: 3.95e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  21 LEINTLAIIPIMTYPNH-PRATESAIKYFLTQTTASMMLMFAI---------INNAWMTNQWALS-QISDQTSSTIMTLA 89
Cdd:PRK08376  150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGIallygqygtLNMAYLAVKMSENpTVVAKIALALFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  90 LAMKLGLAPFHFWVPEVTQGIPLTSGMILLTwQKIAPMSLMYQIS-----PSLNMK----ILITMALLSTVLGGWGGLNQ 160
Cdd:PRK08376  230 LAMKSGAVPVHMWLPDAYPAAPSSISAMLLV-IKQAGLYALARVLfsiygPAINLAtvgwVIIILGCLTMFVGVAMAVVQ 308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 161 IHLRKILAYSSITHMGWMII---IILINPTLTLLNLFIYITTTLTLFLALNHS-----------------STTKIKSLAN 220
Cdd:PRK08376  309 KDVKRLLAYHSVSQIGYMLLglgVGLAALGDPAMASYGEIALAGGIYHIVNHAlykallfltagaviyetGTRNLNELGG 388

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1942250079 221 LWNKSTPMTIVIIITLLSLGGLPPLTGFSPKWLILQELITHNNItMATIMAMSTLLNLFFYMRIIYT 287
Cdd:PRK08376  389 LARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFNPI-LGVIAMIGSVLTLASFVKVFHT 454
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 279-320 8.33e-08

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 48.02  E-value: 8.33e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1942250079 279 FFYMRIIYTTTLTMFPSTNNSKLQWHHQQTKTTNIIPPLTII 320
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTL 42
ndhB CHL00049
NADH dehydrogenase subunit 2
 39-183 3.22e-07

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 51.54  E-value: 3.22e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  39 RATESAIKYFLTQTTASMMLMFAI----------INNAWMTNQWALSQISDQTSSTI----MTLALAMKLGLAPFHFWVP 104
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVYGFswlyglsggeIELQEIVNGLINTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 105 EVTQGIPLTSGMILLTWQKIAPMSLMYQIS----PSLNMK---ILITMALLSTVLGGWGGLNQIHLRKILAYSSITHMGW 177
Cdd:CHL00049  239 DVYEGSPTPVVAFLSVTSKVAASALATRIFdipfYFSSNEwhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318


                  ....*.
gi 1942250079 178 MIIIIL 183
Cdd:CHL00049  319 VIIGII 324
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
2-180 3.44e-07

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 51.62  E-value: 3.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   2 LLGTSLTLFSSHWLT---AWM--GLEINTLaiipIMTYPNHPRATESAIKYFLTQTTASMMLMFAIINNAWMTNQWALSQ 76
Cdd:PRK08168  110 LAAVHLLVLSDHLLVliaAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSA 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  77 I-----------SDQTSSTIMTLALAMKLGLAPFHFWVPEVTQ-----------GIPLTSGMILLtwqKIAPMslmYQIS 134
Cdd:PRK08168  186 LwahlaaqgaspSLQAAALLLVLAVILKTAQLPVHGWLIQVMEaptpvsallhaGVVNLGGFVLI---RFAPL---LEQA 259

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1942250079 135 PSLNMkILITMALLSTVLGGWGGLNQIHLRKILAYSSITHMGWMII 180
Cdd:PRK08168  260 PPARW-LLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLL 304
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 34-180 1.49e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 49.77  E-value: 1.49e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  34 YPNHPRATESAIKYFLTQTTASMMLMFAIINNAWMTNQWALSQI----SDQTSSTIMTLALAM-------KLGLAPFHFW 102
Cdd:COG1009   154 WYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaPTILSSPLLTLILLLlllgafgKSAQFPLHFW 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 103 VPE-----------------VTQGIPLtsgmilltwqkIAPMSLMYQISPSLNMkILITMALLSTVLGGWGGLNQIHLRK 165
Cdd:COG1009   234 LPDamegptpvsallhaatmVKAGVYL-----------LARLSPLFALSPVWLT-VVAIIGAITALFAALIALAQTDIKR 301

                         170
                  ....*....|....*
gi 1942250079 166 ILAYSSITHMGWMII 180
Cdd:COG1009   302 VLAYSTVSQLGYMFL 316
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 31-287 2.14e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 49.20  E-value: 2.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  31 IMTYPNHPRATESAIKYFLTQTTASMMLMFA--IINNAWMT-NQWALSQISDQTSSTIMT-------LALAMKLGLA--- 97
Cdd:PRK12667  153 VAYYRDRGDAVEAAIKYALIGAVGTTLYFLAlaFLYATFGTlNMADLSAKIRGLSFPLTGglagnppLALGVALALAlwa 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  98 --------PFHFWVPEVTQGIP-----LTSGMILLT--WQKIAPMSLMYQISPSLN------MKILITMALLSTVLGGWG 156
Cdd:PRK12667  233 ftikaaifPNHFWLPDAHPAAPspvsaMLSGLVVNVgaYAIIRFLYTIFGISPSLIdfraalSPILIILGAVSAIIGALM 312

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 157 GLNQIHLRKILAYSSITHMGWMIIIILINPTLTLLNLFIYI--------TTTLTLFLALNHSSTTKIKSLANLWNKSTPM 228
Cdd:PRK12667  313 MVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIinhaiaksLLFLASGVFIHAAGTRDIDELAGLGRKMPIA 392

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1942250079 229 TIVIIITLLSLGGLPPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRIIYT 287
Cdd:PRK12667  393 SFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS 451
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 37-180 3.64e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 48.15  E-value: 3.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  37 HPRATESAIKYFLTQTTASMMLMFAIINNAWMTNQW-------ALSQISDQTSSTIMT---LALAMKLGLAPFHFWVPEV 106
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaelAAAPLPLTAQLLLFLaffIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 107 TQGIPLTSGMIL---------------------LTWQKIAPmslmyqispslnmkILITMALLSTVLGGWGGLNQIHLRK 165
Cdd:COG1008   236 HVEAPTAGSVLLagvllkmggygllrfalplfpEASAYFAP--------------LLAALGVIGIIYGALVALAQTDLKR 301

                         170
                  ....*....|....*
gi 1942250079 166 ILAYSSITHMGWMII 180
Cdd:COG1008   302 LIAYSSVSHMGFVLL 316
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 21-286 6.12e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 47.57  E-value: 6.12e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  21 LEINTLAIIPIMTYPNHPRATESAIKYFLTQTTASMMLMFAII---------NNAWMTNQwALSQISDQTSSTIMTLALA 91
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGllygvtgtlNMADLAGA-LAENPTVVTAFGFVLLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  92 MKLGLAPFHFWVPE-----------------VTQGIPLTSGMILLTWQKIAPMSLMYQIspslnmkILITMALLSTVLGG 154
Cdd:PRK08375  214 LKAAVFPLHTWLPRaypaappvvtallsglvTKVAVYALIRIYFTVFGGDFRFALGLGW-------LLAVLALLSMLVGS 286

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 155 WGGLNQIHLRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITttltlflalNHS-----------------STTKIKS 217
Cdd:PRK08375  287 LAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLL---------HHAlmkgalflaagaievtyGTRRLSE 357

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1942250079 218 LANLWNKSTPMTIVIIITLLSLGGLPPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRIIY 286
Cdd:PRK08375  358 LSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 43-182 9.85e-06

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 46.86  E-value: 9.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  43 SAIKYFLTQTTASMMLMFAIINNAWMT------NQWALSQISDQTSSTIMT---LALAMKLGLAPFHFWVPEV-----TQ 108
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLYFLGggtfdlLELLNLPLPFGVQTWLFLaffIAFAVKVPLFPLHTWLPDAhveapTA 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 109 GIPLTSGMILltwqKIAPMSLM---YQISPSLN---MKILITMALLSTVLGGWGGLNQIHLRKILAYSSITHMGWMIIII 182
Cdd:TIGR01972 237 GSVILAGVLL----KMGTYGFLrfnLPLFPDASlyfAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGI 312
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 88-190 9.23e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 44.14  E-value: 9.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  88 LALAMKLGLAPFHFWVPEVTQGIPLTSGM----ILLTWQKIAPMSLMYQISPSLNMKI---LITMALLSTVLGGWGGLNQ 160
Cdd:MTH00226  238 LAMAVKIPIFPFHIWLPKAHVEAPVAGSVllagILLKLGGYGLVRLSWPILPLGAQNLapaVIAMGIVGIVYGSFATCRQ 317

                          90       100       110
                  ....*....|....*....|....*....|
gi 1942250079 161 IHLRKILAYSSITHMGWMIIIILINPTLTL 190
Cdd:MTH00226  318 IDVKRLVAYSSVAHMGLVSITLVTHDIIGL 347
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 1-190 1.05e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 43.59  E-value: 1.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079   1 ILLGTSLTLFSSHWLTAWMGLEINTLAIIPIMTYPNHPRATESAIKYFLTQTTA------SMMLMFAIINNAWMTNQWAL 74
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  75 SQISDQT----------SSTIMTLALAMKLGLAPFHFWVPEVTQGIP-----LTSGMIL-LTWQKIAPMSLMY---QISP 135
Cdd:PRK08676  191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAYAKAPsvvsaLLSGTVLnIGIYGILRLSALLrqsGAAE 270

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1942250079 136 SLNMkILITMALLSTVLGGWGGLNQIHLRKILAYSSITHMGWMIIIILINPTLTL 190
Cdd:PRK08676  271 QFSN-VLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLAL 324
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 140-285 2.63e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.41  E-value: 2.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 140 KILITMALLSTVLGGWGGLNQIHLRKILAYSSITHMGWMIIIILINPTLTLLNLFIYITTTLTLFLAL--------NHSS 211
Cdd:PRK12662  280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALfmvsgsisYHFG 359

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1942250079 212 TTKIKSLANLWNKSTPMTIVIIITLLSLGGLPPLTGFSPKWLILQELITHNNITMATIMAMSTLLNLFFYMRII 285
Cdd:PRK12662  360 TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKIV 433
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 49-182 6.11e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 41.45  E-value: 6.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  49 LTQTTA---SMMLMFAIINNAwmTNQWALSQI-SDQTSSTIMTLALAM-------KLGLAPFHFWVPE------------ 105
Cdd:PRK12644  163 LLVTTAgglAMLVGIIILGQA--AGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGamaaptpvsayl 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 106 -----VTQGIPLtsgmilltwqkIAPMSLMYQISPSLNMkILITMALLSTVLGGWGGLNQIHLRKILAYSSITHMGWMII 180
Cdd:PRK12644  241 haaamVKAGIYL-----------VARLAPGFADVPVWRP-TVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTV 308


                  ..
gi 1942250079 181 II 182
Cdd:PRK12644  309 LV 310
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 31-193 1.44e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 40.48  E-value: 1.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  31 IMTYPNHPRATESAIKYFLTQTTASMMLMFAIINNAWMTNQWALSqiSDQTSSTIMTL-------ALAMKLGLAPFHFWV 103
Cdd:PRK08667  151 VMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELS--PLGASAGILSLvflllflGFGIKAGIIPFHKWL 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 104 PEVTQGIP-----LTSGMILLTWQKIAPMSLMYQISPSLNMKILI-TMALLSTVLGGWGGLNQIHLRKILAYSSITHMG- 176
Cdd:PRK08667  229 PYAHPASPsnvsaLMSGVMLKVAVYGLVRFLMDVLSPELWWGVLIlLAGSISALLGVIYALKEHDLKGLLAYSSIENIGi 308

                         170       180
                  ....*....|....*....|....
gi 1942250079 177 -------WMIIIILINPTLTLLNL 193
Cdd:PRK08667  309 ilmgiglYVIFGVYGLDTLALLAL 332
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 43-185 1.74e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 39.82  E-value: 1.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  43 SAIKYFLTQT-TASMMLMFAII--------NNAWMTNQWALSQISDQTSSTIMTLALAMKLGLAPFHFWVPEVTQGIPLT 113
Cdd:MTH00150  106 QAGMYMMLYTvGASLPLLLVILwmsssygsSFMLLISSLRKLLSSMGLWGLLVFLAFLVKLPMYPFHLWLPKAHVEAPVA 185

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1942250079 114 SGMIL------LTWQKIAPMSLMYQISPSLNMKILITMALLSTVLGGWGGLNQIHLRKILAYSSITHMGWMIIIILIN 185
Cdd:MTH00150  186 GSMILagillkLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVLAGVLSN 263
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 99-320 3.33e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 39.29  E-value: 3.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  99 FHFWVPEVTQGIPLTSGMILLTWQKIAPMSLMYQISPSLNMKILITMAL-----LSTVLGGWGGLNQIHLRKILAYSSIT 173
Cdd:MTH00020  229 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVtivgsLTVFFAATVGLVQNDLKKVIAYSTCS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079 174 HMGWMIIIILINP-TLTLLNL--------FIYITTTLTLFLALNHSSTTKIKSLAnlwnKSTPMT-IVIIITLLSLGGLP 243
Cdd:MTH00020  309 QLGYMVVACGLSHySISLFHLmnhaffkaLLFLSAGSVIHALSDEQDMRKMGGLI----SFLPLTyIFFLIGSLSLMGFP 384

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1942250079 244 PLTGFSPKWLILQELITHNNITMAT-IMAMSTLLNLFFYMRIIYtttLTMFPSTNNSKLQWHHQQTKTTNIIPPLTII 320
Cdd:MTH00020  385 YLTGFYSKDLILELAFGQYYLIFAYwLGCFSALLTAFYSIRLIY---LTFLSNTNLKKAVFFHLHEGDWNLLLPLGIL 459
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 45-195 3.66e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 38.81  E-value: 3.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  45 IKYFLTQTTASMMLMFAIINNAWMTNQWALsqisdqtsstIMTLALAMKLGLAPFHFWVPEVTQGIPLTSGMILL----- 119
Cdd:MTH00205  160 FFLNSLNFSLSMFFNFPLNFSDFYLFLYWI----------FLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAgvllk 229

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1942250079 120 --TWQKIAPMSLMYQISpSLNMKILITMALLSTVLGGWGGLNQIHLRKILAYSSITHMGWMIIIILINPTLTLLNLFI 195
Cdd:MTH00205  230 lgGYGLIRITSMLYKLN-SNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAII 306
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 88-176 4.46e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 38.49  E-value: 4.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  88 LALAMKLGLAPFHFWVPEVTQGIPLTSGMIL--------------LTWqKIAPMSLMYqISPslnmkILITMALLSTVLG 153
Cdd:MTH00217  214 LSLAIKIPKIPFHIWLPQAHVEAPVAGSVILagvllklggygfirFSW-PLLPEASEY-FSP-----LIQTLSLLAIIYG 286

                          90       100
                  ....*....|....*....|...
gi 1942250079 154 GWGGLNQIHLRKILAYSSITHMG 176
Cdd:MTH00217  287 SLTTCRQVDLKRIIAYSSVAHMG 309
PRK12650 PRK12650
DUF4040 family protein;
98-182 4.50e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 38.87  E-value: 4.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1942250079  98 PFHFWVPEVTQGIPLTSGMILLTWQKIAPMSLMYQISPSLN-----MKILITMALLSTVLGGWGGLNQIHLRKILAYSSI 172
Cdd:PRK12650  226 PFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHdvavwNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTV 305

                          90
                  ....*....|
gi 1942250079 173 THMGWMIIII 182
Cdd:PRK12650  306 SQLGWIVATI 315
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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