NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2000108947|gb|QST77743|]
View 

Mycbp-associated protein, partial [Rattus norvegicus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
MYCBPAP super family cl20608
MYCBP-associated protein family; This family of eukaryotic proteins includes the mammalian ...
 1-31 3.67e-08

MYCBP-associated protein family; This family of eukaryotic proteins includes the mammalian MYCBP-associated proteins. These proteins may be synaptic processes and may have a role in spermatogenesis.


The actual alignment was detected with superfamily member pfam14646:

Pssm-ID: 464234  Cd Length: 432  Bit Score: 45.77  E-value: 3.67e-08
                          10        20        30
                  ....*....|....*....|....*....|..
gi 2000108947   1 IWYDWRRRPQQDFFQDLKQN-RTQRFYFNNRE 31
Cdd:pfam14646 270 IWYSWRRLPPYNAFGSLKLNnRMQRFYFDTSE 301
 
Name Accession Description Interval E-value
MYCBPAP pfam14646
MYCBP-associated protein family; This family of eukaryotic proteins includes the mammalian ...
 1-31 3.67e-08

MYCBP-associated protein family; This family of eukaryotic proteins includes the mammalian MYCBP-associated proteins. These proteins may be synaptic processes and may have a role in spermatogenesis.


Pssm-ID: 464234  Cd Length: 432  Bit Score: 45.77  E-value: 3.67e-08
                          10        20        30
                  ....*....|....*....|....*....|..
gi 2000108947   1 IWYDWRRRPQQDFFQDLKQN-RTQRFYFNNRE 31
Cdd:pfam14646 270 IWYSWRRLPPYNAFGSLKLNnRMQRFYFDTSE 301
 
Name Accession Description Interval E-value
MYCBPAP pfam14646
MYCBP-associated protein family; This family of eukaryotic proteins includes the mammalian ...
 1-31 3.67e-08

MYCBP-associated protein family; This family of eukaryotic proteins includes the mammalian MYCBP-associated proteins. These proteins may be synaptic processes and may have a role in spermatogenesis.


Pssm-ID: 464234  Cd Length: 432  Bit Score: 45.77  E-value: 3.67e-08
                          10        20        30
                  ....*....|....*....|....*....|..
gi 2000108947   1 IWYDWRRRPQQDFFQDLKQN-RTQRFYFNNRE 31
Cdd:pfam14646 270 IWYSWRRLPPYNAFGSLKLNnRMQRFYFDTSE 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH