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Conserved domains on  [gi|2028691250|gb|QUA69702|]
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cytochrome B, partial (mitochondrion) [Galegeeska rufescens]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 2-139 1.39e-106

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 308.11  E-value: 1.39e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250   2 QTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00100    6 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHAN 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691250  82 GASLFFICLFIHVGRGIYYGSYLFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00100   86 GASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGA 143
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 2-139 1.39e-106

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 308.11  E-value: 1.39e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250   2 QTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00100    6 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHAN 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691250  82 GASLFFICLFIHVGRGIYYGSYLFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00100   86 GASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGA 143
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 5-139 1.33e-59

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 182.57  E-value: 1.33e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250   5 PLLKIINHSFIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGAS 84
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2028691250  85 LFFICLFIHVGRGIYYGSY--LFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGA 137
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
14-139 3.73e-53

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 166.02  E-value: 3.73e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250  14 FIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASLFFICLFIH 93
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2028691250  94 VGRGIYYG--SYLFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGA 128
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
7-139 2.00e-52

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 169.97  E-value: 2.00e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250   7 LKIINHSFIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASLF 86
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691250  87 FICLFIHVGRGIYYGSY-----LffeTWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGA 154
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 2-139 1.39e-106

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 308.11  E-value: 1.39e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250   2 QTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00100    6 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHAN 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691250  82 GASLFFICLFIHVGRGIYYGSYLFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00100   86 GASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGA 143
CYTB MTH00119
cytochrome b; Provisional
 3-139 1.34e-94

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 277.55  E-value: 1.34e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250   3 THPLLKIINHSFIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANG 82
Cdd:MTH00119    8 SHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANG 87

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2028691250  83 ASLFFICLFIHVGRGIYYGSYLFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00119   88 ASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGA 144
CYTB MTH00131
cytochrome b; Provisional
 2-139 2.87e-94

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 276.92  E-value: 2.87e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250   2 QTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00131    6 KTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHAN 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691250  82 GASLFFICLFIHVGRGIYYGSYLFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00131   86 GASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGA 143
CYTB MTH00074
cytochrome b; Provisional
 2-139 1.03e-93

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 275.41  E-value: 1.03e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250   2 QTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00074    7 KTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHAN 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691250  82 GASLFFICLFIHVGRGIYYGSYLFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00074   87 GASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGA 144
CYTB MTH00191
cytochrome b; Provisional
 3-139 8.11e-92

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 269.86  E-value: 8.11e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250   3 THPLLKIINHSFIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANG 82
Cdd:MTH00191    4 THPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANG 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2028691250  83 ASLFFICLFIHVGRGIYYGSYLFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00191   84 ASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGA 140
CYTB MTH00156
cytochrome b; Provisional
 7-139 1.04e-90

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 267.03  E-value: 1.04e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250   7 LKIINHSFIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASLF 86
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2028691250  87 FICLFIHVGRGIYYGSYLFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGA 133
CYTB MTH00145
cytochrome b; Provisional
 2-139 1.16e-84

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 252.13  E-value: 1.16e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250   2 QTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00145    7 KSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHAN 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691250  82 GASLFFICLFIHVGRGIYYGSYLFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00145   87 GASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGA 144
CYTB MTH00034
cytochrome b; Validated
 2-139 1.50e-83

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 249.62  E-value: 1.50e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250   2 QTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00034    6 KSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHAN 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691250  82 GASLFFICLFIHVGRGIYYGSYLFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00034   86 GASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAA 143
CYTB MTH00016
cytochrome b; Validated
 2-139 5.25e-82

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 245.36  E-value: 5.25e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250   2 QTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00016    7 KTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHAN 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691250  82 GASLFFICLFIHVGRGIYYGSYLFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00016   87 GASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGA 144
CYTB MTH00224
cytochrome b; Provisional
 2-139 5.54e-72

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 219.79  E-value: 5.54e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250   2 QTHPLLKIINHSFIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHAN 81
Cdd:MTH00224    7 TTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHAN 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691250  82 GASLFFICLFIHVGRGIYYGSYLFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00224   87 GASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGA 144
CYTB MTH00022
cytochrome b; Validated
 4-139 1.53e-70

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 216.11  E-value: 1.53e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250   4 HPLLKIINHSFIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGA 83
Cdd:MTH00022    7 NPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGA 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2028691250  84 SLFFICLFIHVGRGIYYGSYLFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00022   87 SLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGA 142
CYTB MTH00053
cytochrome b; Provisional
 5-139 1.14e-64

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 201.09  E-value: 1.14e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250   5 PLLKIINHSFIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGAS 84
Cdd:MTH00053   10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2028691250  85 LFFICLFIHVGRGIYYGSYLFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00053   90 MFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAA 144
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 5-139 1.33e-59

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 182.57  E-value: 1.33e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250   5 PLLKIINHSFIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGAS 84
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2028691250  85 LFFICLFIHVGRGIYYGSY--LFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGA 137
CYTB MTH00033
cytochrome b; Provisional
 15-139 1.96e-53

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 172.43  E-value: 1.96e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250  15 IDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASLFFICLFIHV 94
Cdd:MTH00033   16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2028691250  95 GRGIYYGSYLFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00033   96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAA 140
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
14-139 3.73e-53

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 166.02  E-value: 3.73e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250  14 FIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASLFFICLFIH 93
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2028691250  94 VGRGIYYG--SYLFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGA 128
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
7-139 2.00e-52

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 169.97  E-value: 2.00e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250   7 LKIINHSFIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASLF 86
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691250  87 FICLFIHVGRGIYYGSY-----LffeTWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGA 154
CYTB MTH00086
cytochrome b; Provisional
 8-139 3.35e-44

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 147.78  E-value: 3.35e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250   8 KIINHSFIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASLFF 87
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2028691250  88 ICLFIHVGRGIYYGSYLFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAA 132
CYTB MTH00046
cytochrome b; Validated
 6-139 1.25e-32

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 117.78  E-value: 1.25e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250   6 LLKIINHSFIDLPAPSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASL 85
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2028691250  86 FFICLFIHVGRGIYYGSYLFFETWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAA 134
PRK03735 PRK03735
cytochrome b6; Provisional
 29-137 2.33e-24

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 93.24  E-value: 2.33e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250  29 FGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASLFFICLFIHVGRGIYYGSYLFFE- 107
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2028691250 108 -TWNIGVILLFATMATAFMGYVLPWGQMSFW 137
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYF 154
petB CHL00070
cytochrome b6
 20-137 3.34e-17

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 74.37  E-value: 3.34e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028691250  20 PSNISSWWNFGSLLGMCLVIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASLFFICLFIHVGRGIY 99
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2028691250 100 YGSYLFFE--TWNIGVILLFATMATAFMGYVLPWGQMSFW 137
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYW 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
84-139 7.64e-13

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 61.87  E-value: 7.64e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2028691250  84 SLFFICLFIHVGRGIYYGSYLFFE--TWNIGVILLFATMATAFMGYVLPWGQMSFWGA 139
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGL 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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