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Conserved domains on  [gi|2086491192|gb|QZL34230|]
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cytochrome b, partial (mitochondrion) [Thallomys nigricauda]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-275 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 602.40  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192   1 PLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGAS 80
Cdd:MTH00100    9 PLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGAS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  81 MFFICLFLHVGRGMYYGSYTFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGF 160
Cdd:MTH00100   89 MFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGF 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 161 SVDKATLTRFFAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGILVMILLLMTLVLFFPD 240
Cdd:MTH00100  169 SVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPD 248

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2086491192 241 LLGDPDNYTPANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:MTH00100  249 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-275 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 602.40  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192   1 PLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGAS 80
Cdd:MTH00100    9 PLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGAS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  81 MFFICLFLHVGRGMYYGSYTFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGF 160
Cdd:MTH00100   89 MFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGF 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 161 SVDKATLTRFFAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGILVMILLLMTLVLFFPD 240
Cdd:MTH00100  169 SVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPD 248

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2086491192 241 LLGDPDNYTPANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:MTH00100  249 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-275 2.62e-112

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 329.06  E-value: 2.62e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192   3 LKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGASMF 82
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  83 FICLFLHVGRGMYYGSYTF---LeTWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGG 159
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGG 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 160 FSVDKATLTRFFAFH-FILPFIIAALAIVHLLFLHETGSNNPTG----LNSDADKIPFHPYYTIKDILGILVMILLLMTL 234
Cdd:COG1290   179 EFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALL 258

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 2086491192 235 VLFFPDllGDPDNYTPANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:COG1290   259 AFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRA 297
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-198 2.53e-97

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 283.88  E-value: 2.53e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192   1 PLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGAS 80
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  81 MFFICLFLHVGRGMYYGSY--TFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWG 158
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2086491192 159 GFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHETGSN 198
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
10-196 8.01e-88

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 259.24  E-value: 8.01e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  10 FIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGASMFFICLFLH 89
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  90 VGRGMYYG--SYTFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATL 167
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2086491192 168 TRFFAFHFILPFIIAALAIVHLLFLHETG 196
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-275 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 602.40  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192   1 PLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGAS 80
Cdd:MTH00100    9 PLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGAS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  81 MFFICLFLHVGRGMYYGSYTFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGF 160
Cdd:MTH00100   89 MFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGF 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 161 SVDKATLTRFFAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGILVMILLLMTLVLFFPD 240
Cdd:MTH00100  169 SVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPD 248

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2086491192 241 LLGDPDNYTPANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:MTH00100  249 LLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283
CYTB MTH00119
cytochrome b; Provisional
 1-275 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 543.34  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192   1 PLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGAS 80
Cdd:MTH00119   10 PLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  81 MFFICLFLHVGRGMYYGSYTFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGF 160
Cdd:MTH00119   90 MFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGF 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 161 SVDKATLTRFFAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGILVMILLLMTLVLFFPD 240
Cdd:MTH00119  170 SVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPN 249

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2086491192 241 LLGDPDNYTPANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:MTH00119  250 LLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 284
CYTB MTH00131
cytochrome b; Provisional
 1-275 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 534.23  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192   1 PLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGAS 80
Cdd:MTH00131    9 PLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGAS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  81 MFFICLFLHVGRGMYYGSYTFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGF 160
Cdd:MTH00131   89 FFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGF 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 161 SVDKATLTRFFAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGILVMILLLMTLVLFFPD 240
Cdd:MTH00131  169 SVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPN 248

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2086491192 241 LLGDPDNYTPANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:MTH00131  249 LLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRS 283
CYTB MTH00074
cytochrome b; Provisional
 1-275 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 528.10  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192   1 PLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGAS 80
Cdd:MTH00074   10 PLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  81 MFFICLFLHVGRGMYYGSYTFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGF 160
Cdd:MTH00074   90 FFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGF 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 161 SVDKATLTRFFAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGILVMILLLMTLVLFFPD 240
Cdd:MTH00074  170 SVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPN 249

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2086491192 241 LLGDPDNYTPANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:MTH00074  250 LLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRS 284
CYTB MTH00156
cytochrome b; Provisional
 3-275 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 525.89  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192   3 LKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGASMF 82
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  83 FICLFLHVGRGMYYGSYTFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSV 162
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 163 DKATLTRFFAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGILVMILLLMTLVLFFPDLL 242
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2086491192 243 GDPDNYTPANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273
CYTB MTH00191
cytochrome b; Provisional
 1-275 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 521.78  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192   1 PLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGAS 80
Cdd:MTH00191    6 PLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGAS 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  81 MFFICLFLHVGRGMYYGSYTFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGF 160
Cdd:MTH00191   86 FFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGF 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 161 SVDKATLTRFFAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGILVMILLLMTLVLFFPD 240
Cdd:MTH00191  166 SVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPN 245

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2086491192 241 LLGDPDNYTPANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:MTH00191  246 LLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRS 280
CYTB MTH00145
cytochrome b; Provisional
 1-275 1.72e-178

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 496.35  E-value: 1.72e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192   1 PLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGAS 80
Cdd:MTH00145   10 PVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  81 MFFICLFLHVGRGMYYGSYTFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGF 160
Cdd:MTH00145   90 FFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGF 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 161 SVDKATLTRFFAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGILVMILLLMTLVLFFPD 240
Cdd:MTH00145  170 SVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPN 249

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2086491192 241 LLGDPDNYTPANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:MTH00145  250 LLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRS 284
CYTB MTH00034
cytochrome b; Validated
 1-275 3.60e-171

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 477.66  E-value: 3.60e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192   1 PLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGAS 80
Cdd:MTH00034    9 PLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGAS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  81 MFFICLFLHVGRGMYYGSYTFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGF 160
Cdd:MTH00034   89 LFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGF 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 161 SVDKATLTRFFAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGILVMILLLMTLVLFFPD 240
Cdd:MTH00034  169 SVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPT 248

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2086491192 241 LLGDPDNYTPANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:MTH00034  249 ALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRS 283
CYTB MTH00016
cytochrome b; Validated
 1-275 6.71e-169

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 471.85  E-value: 6.71e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192   1 PLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGAS 80
Cdd:MTH00016   10 PLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  81 MFFICLFLHVGRGMYYGSYTFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGF 160
Cdd:MTH00016   90 FFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGF 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 161 SVDKATLTRFFAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGILVMILLLMTLVLFFPD 240
Cdd:MTH00016  170 SVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPN 249

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2086491192 241 LLGDPDNYTPANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:MTH00016  250 ILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRS 284
CYTB MTH00224
cytochrome b; Provisional
 1-275 2.74e-147

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 417.40  E-value: 2.74e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192   1 PLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGAS 80
Cdd:MTH00224   10 PAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  81 MFFICLFLHVGRGMYYGSYTFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGF 160
Cdd:MTH00224   90 MFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGF 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 161 SVDKATLTRFFAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGILVMILLLMTLVLFFPD 240
Cdd:MTH00224  170 AVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPN 249

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2086491192 241 LLGDPDNYTPANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:MTH00224  250 LFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRS 284
CYTB MTH00022
cytochrome b; Validated
 1-275 2.27e-143

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 407.55  E-value: 2.27e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192   1 PLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGAS 80
Cdd:MTH00022    8 PLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGAS 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  81 MFFICLFLHVGRGMYYGSYTFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGF 160
Cdd:MTH00022   88 LFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGF 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 161 SVDKATLTRFFAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGILVMILLLMTLVLFFPD 240
Cdd:MTH00022  168 SVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPN 247

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2086491192 241 LLGDPDNYTPANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:MTH00022  248 LLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRS 282
CYTB MTH00053
cytochrome b; Provisional
 1-275 4.27e-143

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 406.78  E-value: 4.27e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192   1 PLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGAS 80
Cdd:MTH00053   10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  81 MFFICLFLHVGRGMYYGSYTFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGF 160
Cdd:MTH00053   90 MFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGF 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 161 SVDKATLTRFFAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGILVMILLLMTLVLFFPD 240
Cdd:MTH00053  170 SVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPY 249

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2086491192 241 LLGDPDNYTPANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:MTH00053  250 SLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRS 284
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-275 2.62e-112

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 329.06  E-value: 2.62e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192   3 LKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGASMF 82
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  83 FICLFLHVGRGMYYGSYTF---LeTWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGG 159
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGG 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 160 FSVDKATLTRFFAFH-FILPFIIAALAIVHLLFLHETGSNNPTG----LNSDADKIPFHPYYTIKDILGILVMILLLMTL 234
Cdd:COG1290   179 EFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALL 258

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 2086491192 235 VLFFPDllGDPDNYTPANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:COG1290   259 AFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRA 297
CYTB MTH00033
cytochrome b; Provisional
 11-275 2.41e-111

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 326.12  E-value: 2.41e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  11 IDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGASMFFICLFLHV 90
Cdd:MTH00033   16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  91 GRGMYYGSYTFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRF 170
Cdd:MTH00033   96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRF 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 171 FAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGILVMILLLMTLVL--FFPDLLGDPDNY 248
Cdd:MTH00033  176 FSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPENF 255

                         250       260
                  ....*....|....*....|....*..
gi 2086491192 249 TPANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:MTH00033  256 IQANPLVTPVHIQPEWYFLFAYAILRS 282
CYTB MTH00086
cytochrome b; Provisional
 4-275 4.26e-103

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 304.17  E-value: 4.26e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192   4 KIINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGASMFF 83
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  84 ICLFLHVGRGMYYGSYTFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVD 163
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 164 KATLTRFFAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGIlVMILLLMTLVLFFPDLLG 243
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLG 239

                         250       260       270
                  ....*....|....*....|....*....|..
gi 2086491192 244 DPDNYTPANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRA 271
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-198 2.53e-97

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 283.88  E-value: 2.53e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192   1 PLLKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGAS 80
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  81 MFFICLFLHVGRGMYYGSY--TFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWG 158
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2086491192 159 GFSVDKATLTRFFAFHFILPFIIAALAIVHLLFLHETGSN 198
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
10-196 8.01e-88

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 259.24  E-value: 8.01e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  10 FIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGASMFFICLFLH 89
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  90 VGRGMYYG--SYTFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATL 167
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2086491192 168 TRFFAFHFILPFIIAALAIVHLLFLHETG 196
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 2-275 1.83e-82

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 251.83  E-value: 1.83e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192   2 LLKIINHSFIDLPAPSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGASM 81
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  82 FFICLFLHVGRGMYYGSYTFLETWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFS 161
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 162 VDKATLTRFFAFHFILPFIIAALAIVHLLFLHETGSNNPTGL-NSDADKIPFHPYYTIKDILGILVMILLLMTLVLFFPD 240
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2086491192 241 LLGDPDNYTPANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRS 275
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
80-245 3.42e-48

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 157.79  E-value: 3.42e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  80 SMFFICLFLHVGRGMYYGSYTFLE--TWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIW 157
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 158 GGFSVDKATLTRFFAFHF-ILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGILVMILLLMTLVL 236
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 2086491192 237 FFPDLLGDP 245
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 25-200 3.61e-42

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 144.08  E-value: 3.61e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  25 FGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGASMFFICLFLHVGRGMYYGSYTFLE- 103
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192 104 -TWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAFH-FILPFII 181
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 2086491192 182 AALAIVHLLFLHETGSNNP 200
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 16-200 1.74e-35

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 126.37  E-value: 1.74e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  16 PSNISSWWNFGSLLGICLMLQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMVRYMHANGASMFFICLFLHVGRGMY 95
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2086491192  96 YGSYTFLE--TWNIGVLLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSTLVEWIWGGFSVDKATLTRFFAF 173
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*...
gi 2086491192 174 H-FILPFIIAALAIVHLLFLHETGSNNP 200
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 199-275 1.21e-28

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 106.58  E-value: 1.21e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2086491192 199 NPTGLNSDADKIPFHPYYTIKDILGILVMILLLMTLVLFFPDLLGDPDNYTPANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRA 77
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
250-275 7.49e-11

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 57.87  E-value: 7.49e-11
                          10        20
                  ....*....|....*....|....*.
gi 2086491192 250 PANPLNTPPHIKPEWYF*FAYAILRS 275
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRS 26
petD CHL00058
cytochrome b6/f complex subunit IV
 224-274 3.32e-03

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 37.29  E-value: 3.32e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2086491192 224 ILVMILLLMTLVLFFPDLLGDPdnytpANPLNTPPHIKPEWYF*FAYAILR 274
Cdd:CHL00058   44 ILGTIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILR 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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