|
Name |
Accession |
Description |
Interval |
E-value |
| PRK08787 |
PRK08787 |
peptide chain release factor 2; Provisional |
62-374 |
0e+00 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 136970 [Multi-domain] Cd Length: 313 Bit Score: 657.12 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 62 SLEKTVGGIASVLDGLNDATELLELAESEQDEDTALAVVADLDKHQAHVEKLEFQRMFSGEMDNAAAFVDIQAGAGGTEA 141
Cdd:PRK08787 1 MLEKTVIGIADVLSGLADAGELLDLAESEQDEDTALAVIADLDKYQAHVEKLEFQRMFSGQMDGANAFVDIQAGAGGTEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 142 QDWAEILLRMYLRWCESRGWKTELMEVSGGDVAGIKSATLRVEGDYAYGWLKTETGVHRLVRKSPFDSDNRRHTSFTSVF 221
Cdd:PRK08787 81 QDWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSVF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 222 VSPEIDDNIDITINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNIVVACQTGRSQHQNRDNAMKMLAAKLYELEIQ 301
Cdd:PRK08787 161 VSPEVDDNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYELEVQ 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2161667741 302 KRNAEKDAVEATKSDIGWGSQIRNYVLDQSRIKDLRTGIERSDTQKVLDGDLDEFVEASLKAGLAVGSKRVDA 374
Cdd:PRK08787 241 KRNAEKDALEATKSDIGWGSQIRNYVLDQSRIKDLRTGIERSDTQKVLDGDLDEFVEASLKAGLAAGSKRLDA 313
|
|
| prfB |
TIGR00020 |
peptide chain release factor 2; In many but not all taxa, there is a conserved real ... |
3-365 |
0e+00 |
|
peptide chain release factor 2; In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc. [Protein synthesis, Translation factors]
Pssm-ID: 272858 [Multi-domain] Cd Length: 364 Bit Score: 517.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 3 ELNPVRQRITDLTDRVLSLRGYLDYDAKKERLEEVTRELESPDVWNNAEYAQNLGRERSSLEKTVGGIASVLDGLNDATE 82
Cdd:TIGR00020 1 EINEVNNRIEDLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 83 LLELAESEQDEDTALAVVADLDKHQAHVEKLEFQRMFSGEMDNAAAFVDIQAGAGGTEAQDWAEILLRMYLRWCESRGWK 162
Cdd:TIGR00020 81 LLELAVEEDDEETFNELDAELKALEKKLAELELRTMLSGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRGFK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 163 TELMEVSGGDVAGIKSATLRVEGDYAYGWLKTETGVHRLVRKSPFDSDNRRHTSFTSVFVSPEIDDNIDITINPADLRTD 242
Cdd:TIGR00020 161 VEIIDYSEGEEAGIKSVTILIKGPYAYGYLKSEQGVHRLVRISPFDANGRRHTSFASVFVMPEVDDDIDIEIKPEDLRID 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 243 VYRSSGAGGQHVNKTESAVRITHIPTNIVVACQTGRSQHQNRDNAMKMLAAKLYELEIQKRNAEKDAVEATKSDIGWGSQ 322
Cdd:TIGR00020 241 TYRASGAGGQHVNKTDSAVRITHIPTGIVVQCQNDRSQHKNKDSAMKVLKAKLYELEMEKEQAEKDAKEGEKSEIGWGSQ 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 2161667741 323 IRNYVLD-QSRIKDLRTGIERSDTQKVLDGDLDEFVEASLKAGL 365
Cdd:TIGR00020 321 IRSYVLHpYSMVKDLRTGYETGNVQAVLDGDIDQFIEAYLKWKL 364
|
|
| PrfA |
COG0216 |
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein ... |
28-359 |
6.10e-111 |
|
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein chain release factor RF1 is part of the Pathway/BioSystem: Translation factors
Pssm-ID: 439986 [Multi-domain] Cd Length: 356 Bit Score: 328.11 E-value: 6.10e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 28 DAKKERLEEVTRELESPDVWNNAEYAQNLGRERSSLEKTVGGIASVLDGLNDATELLELAESEQDEDTALAVVADLDKHQ 107
Cdd:COG0216 7 EALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKKLLEDIEEAKELLEEESDPEMREMAKEELEELE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 108 AHVEKLE--FQRMF--SGEMDNAAAFVDIQAGAGGTEAQDWAEILLRMYLRWCESRGWKTELMEVSGGDVAGIKSATLRV 183
Cdd:COG0216 87 ARLEELEeeLKILLlpKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERKGWKVEILSASEGELGGYKEVIFRI 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 184 EGDYAYGWLKTETGVHRlVRKSP-FDSDNRRHTSFTSVFVSPEIDDnIDITINPADLRTDVYRSSGAGGQHVNKTESAVR 262
Cdd:COG0216 167 SGEGVYSRLKFESGVHR-VQRVPeTESQGRIHTSAATVAVLPEAEE-VDVEINPKDLRIDTFRSSGAGGQHVNTTDSAVR 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 263 ITHIPTNIVVACQTGRSQHQNRDNAMKMLAAKLYELEIQKRNAEKDAveATKSDIGWG--SQ-IRNYVLDQSRIKDLRTG 339
Cdd:COG0216 245 ITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYEAEQQKQQAEIAA--ERKSQVGSGdrSErIRTYNFPQGRVTDHRIN 322
|
330 340
....*....|....*....|
gi 2161667741 340 IERSDTQKVLDGDLDEFVEA 359
Cdd:COG0216 323 LTLYKLDEVMEGDLDELIDA 342
|
|
| PCRF |
pfam03462 |
PCRF domain; This domain is found in peptide chain release factors. |
30-220 |
1.21e-74 |
|
PCRF domain; This domain is found in peptide chain release factors.
Pssm-ID: 460929 [Multi-domain] Cd Length: 192 Bit Score: 229.58 E-value: 1.21e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 30 KKERLEEVTRELESPDVWNNAEYAQNLGRERSSLEKTVGGIA---SVLDGLNDATELL---ELAESEQDEdtalavvadL 103
Cdd:pfam03462 1 LEERYEELEALLSDPDVWDDQKRAQKLSKEYSELEPIVEAYReykQALEDLEEAKELLedpELAELAEEE---------L 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 104 DKHQAHVEKL--EFQRMFS--GEMDNAAAFVDIQAGAGGTEAQDWAEILLRMYLRWCESRGWKTELMEVSGGDVAGIKSA 179
Cdd:pfam03462 72 EELEKRLEELeeELKLLLLpkDPNDDKNAILEIRAGAGGDEAALFAGDLFRMYTRYAERKGWKVEVLDYSETEAGGIKEA 151
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2161667741 180 TLRVEGDYAYGWLKTETGVHRLVRKSPFDSDNRRHTSFTSV 220
Cdd:pfam03462 152 TFEISGEGAYGRLKFESGVHRVQRVPPTESQGRIHTSFATV 192
|
|
| PCRF |
smart00937 |
This domain is found in peptide chain release factors; |
82-195 |
1.36e-47 |
|
This domain is found in peptide chain release factors;
Pssm-ID: 214923 [Multi-domain] Cd Length: 116 Bit Score: 157.24 E-value: 1.36e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 82 ELLELAESEQDEDTALAVVADLDKH-QAHVEKLEFQRMFSG-EMDNAAAFVDIQAGAGGTEAQDWAEILLRMYLRWCESR 159
Cdd:smart00937 1 ELLEEEEDDEMRELAEEELEELEAElEEELEELLKLLLLPKdPNDDKNAILEIRAGAGGDEAALFAGDLLRMYLRYAERK 80
|
90 100 110
....*....|....*....|....*....|....*.
gi 2161667741 160 GWKTELMEVSGGDVAGIKSATLRVEGDYAYGWLKTE 195
Cdd:smart00937 81 GWKVEVLDESEGELGGIKEATLKISGEGAYGKLKFE 116
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK08787 |
PRK08787 |
peptide chain release factor 2; Provisional |
62-374 |
0e+00 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 136970 [Multi-domain] Cd Length: 313 Bit Score: 657.12 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 62 SLEKTVGGIASVLDGLNDATELLELAESEQDEDTALAVVADLDKHQAHVEKLEFQRMFSGEMDNAAAFVDIQAGAGGTEA 141
Cdd:PRK08787 1 MLEKTVIGIADVLSGLADAGELLDLAESEQDEDTALAVIADLDKYQAHVEKLEFQRMFSGQMDGANAFVDIQAGAGGTEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 142 QDWAEILLRMYLRWCESRGWKTELMEVSGGDVAGIKSATLRVEGDYAYGWLKTETGVHRLVRKSPFDSDNRRHTSFTSVF 221
Cdd:PRK08787 81 QDWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSVF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 222 VSPEIDDNIDITINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNIVVACQTGRSQHQNRDNAMKMLAAKLYELEIQ 301
Cdd:PRK08787 161 VSPEVDDNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYELEVQ 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2161667741 302 KRNAEKDAVEATKSDIGWGSQIRNYVLDQSRIKDLRTGIERSDTQKVLDGDLDEFVEASLKAGLAVGSKRVDA 374
Cdd:PRK08787 241 KRNAEKDALEATKSDIGWGSQIRNYVLDQSRIKDLRTGIERSDTQKVLDGDLDEFVEASLKAGLAAGSKRLDA 313
|
|
| prfB |
TIGR00020 |
peptide chain release factor 2; In many but not all taxa, there is a conserved real ... |
3-365 |
0e+00 |
|
peptide chain release factor 2; In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc. [Protein synthesis, Translation factors]
Pssm-ID: 272858 [Multi-domain] Cd Length: 364 Bit Score: 517.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 3 ELNPVRQRITDLTDRVLSLRGYLDYDAKKERLEEVTRELESPDVWNNAEYAQNLGRERSSLEKTVGGIASVLDGLNDATE 82
Cdd:TIGR00020 1 EINEVNNRIEDLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 83 LLELAESEQDEDTALAVVADLDKHQAHVEKLEFQRMFSGEMDNAAAFVDIQAGAGGTEAQDWAEILLRMYLRWCESRGWK 162
Cdd:TIGR00020 81 LLELAVEEDDEETFNELDAELKALEKKLAELELRTMLSGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRGFK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 163 TELMEVSGGDVAGIKSATLRVEGDYAYGWLKTETGVHRLVRKSPFDSDNRRHTSFTSVFVSPEIDDNIDITINPADLRTD 242
Cdd:TIGR00020 161 VEIIDYSEGEEAGIKSVTILIKGPYAYGYLKSEQGVHRLVRISPFDANGRRHTSFASVFVMPEVDDDIDIEIKPEDLRID 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 243 VYRSSGAGGQHVNKTESAVRITHIPTNIVVACQTGRSQHQNRDNAMKMLAAKLYELEIQKRNAEKDAVEATKSDIGWGSQ 322
Cdd:TIGR00020 241 TYRASGAGGQHVNKTDSAVRITHIPTGIVVQCQNDRSQHKNKDSAMKVLKAKLYELEMEKEQAEKDAKEGEKSEIGWGSQ 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 2161667741 323 IRNYVLD-QSRIKDLRTGIERSDTQKVLDGDLDEFVEASLKAGL 365
Cdd:TIGR00020 321 IRSYVLHpYSMVKDLRTGYETGNVQAVLDGDIDQFIEAYLKWKL 364
|
|
| PRK07342 |
PRK07342 |
peptide chain release factor 2; Provisional |
42-361 |
7.85e-142 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 235997 [Multi-domain] Cd Length: 339 Bit Score: 406.19 E-value: 7.85e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 42 ESPDVWNNAEYAQNLGRERSSLEKTVGGIASVLDGLNDATELLELAESEQDEDTALAVVADLDKHQAHVEKLEFQRMFSG 121
Cdd:PRK07342 4 EDPSLWNDAQEAQKLMRERQQLDDSINGINHLEQTLNDNIELIAMGEEEGDKSIVEDAEKTIRDLKDEIDRRQIDALLSG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 122 EMDNAAAFVDIQAGAGGTEAQDWAEILLRMYLRWCESRGWKTELMEVSGGDVAGIKSATLRVEGDYAYGWLKTETGVHRL 201
Cdd:PRK07342 84 EADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERQGRKVEVLEVHDGEEAGIKSATILVKGHNAYGWLKTESGVHRL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 202 VRKSPFDSDNRRHTSFTSVFVSPEIDDNIDITINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNIVVACQTGRSQH 281
Cdd:PRK07342 164 VRISPYDSNARRHTSFASIWVYPVIDDNIEVDVNESDVRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQQERSQH 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 282 QNRDNAMKMLAAKLYELEIQKRNAEKDAVEATKSDIGWGSQIRNYVLDQSR-IKDLRTGIERSDTQKVLDGDLDEFVEAS 360
Cdd:PRK07342 244 KNRAKAWSMLRARLYEEELKKREEATNAAAASKTDIGWGHQIRSYVLQPYQlVKDLRTGVESTNPQDVLDGDLNEFMEAA 323
|
.
gi 2161667741 361 L 361
Cdd:PRK07342 324 L 324
|
|
| PRK05589 |
PRK05589 |
peptide chain release factor 2; Provisional |
41-363 |
3.44e-117 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 235520 [Multi-domain] Cd Length: 325 Bit Score: 342.94 E-value: 3.44e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 41 LESPDVWNNAEYAQNLGRERSSLEKTVGGIASVLDGLNDATELLELAEsEQDEDTALAVVADLDKHQAHVEKLEFQRMFS 120
Cdd:PRK05589 1 MQEPNFWNDIKEAQEITSEEKYLKDKLDKYNHLRNRIEDIEVLCEMMS-EEDDEMKKEIISEVKNIKEEIDRFKIETLLS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 121 GEMDNAAAFVDIQAGAGGTEAQDWAEILLRMYLRWCESRGWKTELMEVSGGDVAGIKSATLRVEGDYAYGWLKTETGVHR 200
Cdd:PRK05589 80 GEYDRNNAILTLHSGVGGTDAQDWTEMLLRMYTRWAEKKGYKVEIIDLLEGDEAGIKSVTLKITGEFAYGYLKAEKGIHR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 201 LVRKSPFDSDNRRHTSFTSVFVSPEIDDNIDITINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNIVVACQTGRSQ 280
Cdd:PRK05589 160 LVRISPFNANGKRQTSFASVEVLPELTDDQDIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQ 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 281 HQNRDNAMKMLAAKLYELeiqKRNAEKDAVE---ATKSDIGWGSQIRNYVLDQ-SRIKDLRTGIERSDTQKVLDGDLDEF 356
Cdd:PRK05589 240 HSNKETAMKMLKSKLVEL---KERAHKEKIEdltGELKDMGWGSQIRSYVFHPyNLVKDHRTGVETSNVDSVMDGDIDNF 316
|
....*..
gi 2161667741 357 VEASLKA 363
Cdd:PRK05589 317 ITQYLKG 323
|
|
| prfA |
PRK00591 |
peptide chain release factor 1; Validated |
31-359 |
8.71e-112 |
|
peptide chain release factor 1; Validated
Pssm-ID: 234801 [Multi-domain] Cd Length: 359 Bit Score: 330.50 E-value: 8.71e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 31 KERLEEVTRELESPDVWNNAEYAQNLGRERSSLEKTVGGIASVLDGLNDATELLELAESEQDEDTALAVVADLDKHQAHV 110
Cdd:PRK00591 12 EERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEEESDPEMREMAKEELKELEERL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 111 EKLE--FQRMF--SGEMDNAAAFVDIQAGAGGTEAQDWAEILLRMYLRWCESRGWKTELMEVSGGDVAGIKSATLRVEGD 186
Cdd:PRK00591 92 EELEeeLKILLlpKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGGYKEVIAEISGD 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 187 YAYGWLKTETGVHRLVRKSPFDSDNRRHTSFTSVFVSPEIDDnIDITINPADLRTDVYRSSGAGGQHVNKTESAVRITHI 266
Cdd:PRK00591 172 GVYSKLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEAEE-VEVEINPKDLRIDTFRSSGAGGQHVNTTDSAVRITHL 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 267 PTNIVVACQTGRSQHQNRDNAMKMLAAKLYELEIQKRNAEKDAveATKSDIGWGS---QIRNYVLDQSRIKDLRTGIERS 343
Cdd:PRK00591 251 PTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEAA--TRKSQVGSGDrseRIRTYNFPQGRVTDHRINLTLY 328
|
330
....*....|....*.
gi 2161667741 344 DTQKVLDGDLDEFVEA 359
Cdd:PRK00591 329 KLDEVMEGDLDELIDA 344
|
|
| PrfA |
COG0216 |
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein ... |
28-359 |
6.10e-111 |
|
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein chain release factor RF1 is part of the Pathway/BioSystem: Translation factors
Pssm-ID: 439986 [Multi-domain] Cd Length: 356 Bit Score: 328.11 E-value: 6.10e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 28 DAKKERLEEVTRELESPDVWNNAEYAQNLGRERSSLEKTVGGIASVLDGLNDATELLELAESEQDEDTALAVVADLDKHQ 107
Cdd:COG0216 7 EALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKKLLEDIEEAKELLEEESDPEMREMAKEELEELE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 108 AHVEKLE--FQRMF--SGEMDNAAAFVDIQAGAGGTEAQDWAEILLRMYLRWCESRGWKTELMEVSGGDVAGIKSATLRV 183
Cdd:COG0216 87 ARLEELEeeLKILLlpKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERKGWKVEILSASEGELGGYKEVIFRI 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 184 EGDYAYGWLKTETGVHRlVRKSP-FDSDNRRHTSFTSVFVSPEIDDnIDITINPADLRTDVYRSSGAGGQHVNKTESAVR 262
Cdd:COG0216 167 SGEGVYSRLKFESGVHR-VQRVPeTESQGRIHTSAATVAVLPEAEE-VDVEINPKDLRIDTFRSSGAGGQHVNTTDSAVR 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 263 ITHIPTNIVVACQTGRSQHQNRDNAMKMLAAKLYELEIQKRNAEKDAveATKSDIGWG--SQ-IRNYVLDQSRIKDLRTG 339
Cdd:COG0216 245 ITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYEAEQQKQQAEIAA--ERKSQVGSGdrSErIRTYNFPQGRVTDHRIN 322
|
330 340
....*....|....*....|
gi 2161667741 340 IERSDTQKVLDGDLDEFVEA 359
Cdd:COG0216 323 LTLYKLDEVMEGDLDELIDA 342
|
|
| prfA |
TIGR00019 |
peptide chain release factor 1; This model describes peptide chain release factor 1 (PrfA, ... |
28-359 |
5.74e-100 |
|
peptide chain release factor 1; This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift. [Protein synthesis, Translation factors]
Pssm-ID: 129130 [Multi-domain] Cd Length: 360 Bit Score: 300.46 E-value: 5.74e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 28 DAKKERLEEVTRELESPDVWNNAEYAQNLGRERSSLEKTV---GGIASVLDGLNDATELLElaesEQDEDTALAVVADLD 104
Cdd:TIGR00019 10 ESLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLEEIVdcyREYQQAQEDIKEAKEILE----ESDPEMREMAKEELE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 105 KHQAHVEKLEFQRMF----SGEMDNAAAFVDIQAGAGGTEAQDWAEILLRMYLRWCESRGWKTELMEVSGGDVAGIKSAT 180
Cdd:TIGR00019 86 ELEEKIEELEEQLKVlllpKDPNDEKNVILEIRAGTGGDEAAIFAGDLFRMYSRYAESKGWKVEILSANETELGGYKEVI 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 181 LRVEGDYAYGWLKTETGVHRLVRKSPFDSDNRRHTSFTSVFVSPEIDDnIDITINPADLRTDVYRSSGAGGQHVNKTESA 260
Cdd:TIGR00019 166 AEIKGDGVYSRLKFESGVHRVQRVPVTESQGRIHTSAATVAVMPELEE-VEVDINPADLRIDTFRSSGAGGQHVNTTDSA 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 261 VRITHIPTNIVVACQTGRSQHQNRDNAMKMLAAKLYELEIQKRNAEKDAVEatKSDIGWGS---QIRNYVLDQSRIKDLR 337
Cdd:TIGR00019 245 VRITHLPTGIVVECQDERSQHKNKDKAMKVLRARLYEAEQEKQQAAQASTR--KSQVGSGDrseRIRTYNFPQNRVTDHR 322
|
330 340
....*....|....*....|..
gi 2161667741 338 TGIERSDTQKVLDGDLDEFVEA 359
Cdd:TIGR00019 323 INLTLYKLDEVLEGDLDELIEA 344
|
|
| PRK06746 |
PRK06746 |
peptide chain release factor 2; Provisional |
47-363 |
8.87e-97 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 75726 [Multi-domain] Cd Length: 326 Bit Score: 291.25 E-value: 8.87e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 47 WNNAEYAQNLGRERSSLEKTVGGIASVLDGLNDATELLELAESEQDEDTALAVVADLDKHQAHVEKLEFQRMFSGEMDNA 126
Cdd:PRK06746 7 WDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHELLKEEYDEDLHEELESEVKGLIQEMNEYELQLLLSDPYDKN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 127 AAFVDIQAGAGGTEAQDWAEILLRMYLRWCESRGWKTELMEVSGGDVAGIKSATLRVEGDYAYGWLKTETGVHRLVRKSP 206
Cdd:PRK06746 87 NAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISP 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 207 FDSDNRRHTSFTSVFVSPEIDDNIDITINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNIVVACQTGRSQHQNRDN 286
Cdd:PRK06746 167 FDSSGRRHTSFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQSERSQIKNREH 246
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2161667741 287 AMKMLAAKLYELEIQKRNAEKDAVEATKSDIGWGSQIRNYVLDQ-SRIKDLRTGIERSDTQKVLDGDLDEFVEASLKA 363
Cdd:PRK06746 247 AMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWGSQIRSYVFHPySLVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRS 324
|
|
| PCRF |
pfam03462 |
PCRF domain; This domain is found in peptide chain release factors. |
30-220 |
1.21e-74 |
|
PCRF domain; This domain is found in peptide chain release factors.
Pssm-ID: 460929 [Multi-domain] Cd Length: 192 Bit Score: 229.58 E-value: 1.21e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 30 KKERLEEVTRELESPDVWNNAEYAQNLGRERSSLEKTVGGIA---SVLDGLNDATELL---ELAESEQDEdtalavvadL 103
Cdd:pfam03462 1 LEERYEELEALLSDPDVWDDQKRAQKLSKEYSELEPIVEAYReykQALEDLEEAKELLedpELAELAEEE---------L 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 104 DKHQAHVEKL--EFQRMFS--GEMDNAAAFVDIQAGAGGTEAQDWAEILLRMYLRWCESRGWKTELMEVSGGDVAGIKSA 179
Cdd:pfam03462 72 EELEKRLEELeeELKLLLLpkDPNDDKNAILEIRAGAGGDEAALFAGDLFRMYTRYAERKGWKVEVLDYSETEAGGIKEA 151
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2161667741 180 TLRVEGDYAYGWLKTETGVHRLVRKSPFDSDNRRHTSFTSV 220
Cdd:pfam03462 152 TFEISGEGAYGRLKFESGVHRVQRVPPTESQGRIHTSFATV 192
|
|
| RF-1 |
pfam00472 |
RF-1 domain; This domain is found in peptide chain release factors such as RF-1 and RF-2, and ... |
228-337 |
3.29e-63 |
|
RF-1 domain; This domain is found in peptide chain release factors such as RF-1 and RF-2, and a number of smaller proteins of unknown function. This domain contains the peptidyl-tRNA hydrolase activity. The domain contains a highly conserved motif GGQ, where the glutamine is thought to coordinate the water that mediates the hydrolysis.
Pssm-ID: 459823 [Multi-domain] Cd Length: 111 Bit Score: 197.26 E-value: 3.29e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 228 DNIDITINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNIVVACQTGRSQHQNRDNAMKMLAAKLYELEIQKRNAEK 307
Cdd:pfam00472 1 DEIEIEIDPKDLRIDTFRSSGAGGQHVNKTDSAVRLTHIPTGIVVKCQDERSQHQNREKALKRLRARLYELEEEKEEEKK 80
|
90 100 110
....*....|....*....|....*....|.
gi 2161667741 308 DAVEATKSDIGWGSQIRNYVLD-QSRIKDLR 337
Cdd:pfam00472 81 RRIKSQVGSGDRSEQIRTYNFKpQSRVKDHR 111
|
|
| PrfB |
COG1186 |
Protein chain release factor PrfB [Translation, ribosomal structure and biogenesis]; Protein ... |
222-352 |
6.90e-50 |
|
Protein chain release factor PrfB [Translation, ribosomal structure and biogenesis]; Protein chain release factor PrfB is part of the Pathway/BioSystem: Translation factors
Pssm-ID: 440799 [Multi-domain] Cd Length: 140 Bit Score: 164.15 E-value: 6.90e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 222 VSPEIDdniditINPADLRTDVYRSSGAGGQHVNKTESAVRITH------------IPTNIVVACQTGRSQHQNRDNAMK 289
Cdd:COG1186 17 ISPEIE------IPESDLRIDTYRASGAGGQNVNKVSSAVRLTHdiassslpdsrlTPGGIVVKAQEERSQHQNREDALK 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2161667741 290 MLAAKLYELEIQKRNAEK-DAVEATKSDIGWGSQIRnyvldqSRIKDLRtgiersdtQKVLDGD 352
Cdd:COG1186 91 RLKALLYEAELEPKERRAtKPTRGSKKRRLWGKQIR------SMVKDLR--------GNVDDGD 140
|
|
| PCRF |
smart00937 |
This domain is found in peptide chain release factors; |
82-195 |
1.36e-47 |
|
This domain is found in peptide chain release factors;
Pssm-ID: 214923 [Multi-domain] Cd Length: 116 Bit Score: 157.24 E-value: 1.36e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 82 ELLELAESEQDEDTALAVVADLDKH-QAHVEKLEFQRMFSG-EMDNAAAFVDIQAGAGGTEAQDWAEILLRMYLRWCESR 159
Cdd:smart00937 1 ELLEEEEDDEMRELAEEELEELEAElEEELEELLKLLLLPKdPNDDKNAILEIRAGAGGDEAALFAGDLLRMYLRYAERK 80
|
90 100 110
....*....|....*....|....*....|....*.
gi 2161667741 160 GWKTELMEVSGGDVAGIKSATLRVEGDYAYGWLKTE 195
Cdd:smart00937 81 GWKVEVLDESEGELGGIKEATLKISGEGAYGKLKFE 116
|
|
| release_prfH |
TIGR03072 |
putative peptide chain release factor H; Members of this protein family are bacterial proteins ... |
132-307 |
4.80e-29 |
|
putative peptide chain release factor H; Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon. [Protein synthesis, Translation factors]
Pssm-ID: 213768 Cd Length: 200 Bit Score: 111.40 E-value: 4.80e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 132 IQAGAGGTEAQDWAEILLRMYLRWCESRGWKTELMEVSGGDVAG-IKSATLRVEGDYAYGWLKTETGVHRLVRKSPFDSD 210
Cdd:TIGR03072 5 LSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVPGtLRSALVSLDGEAAAALADRWEGTLLWICPSPYRPH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 211 NRRHTSFTSV--FVSPEiddnidiTINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNIVVACQTGRSQHQNRDNAM 288
Cdd:TIGR03072 85 HRRKNWFIGVqrFSASE-------EATEDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKRLAT 157
|
170
....*....|....*....
gi 2161667741 289 KMLAAKLYELEIQKRNAEK 307
Cdd:TIGR03072 158 LLLAVRLADLQQEQAAALR 176
|
|
| PRK09256 |
PRK09256 |
aminoacyl-tRNA hydrolase; |
229-293 |
1.45e-09 |
|
aminoacyl-tRNA hydrolase;
Pssm-ID: 181730 [Multi-domain] Cd Length: 138 Bit Score: 55.93 E-value: 1.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161667741 229 NIDITINPADLRTDVYRSSGAGGQHVNKTESAV------RITHIPTN------------------IVVACQTGRSQHQNR 284
Cdd:PRK09256 5 TRRLVIPENELEWRFIRASGPGGQNVNKVSTAVelrfdiAASSLPEFykerllalaghritkdgvIVIKAQEFRSQERNR 84
|
....*....
gi 2161667741 285 DNAMKMLAA 293
Cdd:PRK09256 85 EDALERLVA 93
|
|
| |
