NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2290906979|gb|UVT34658|]
View 

Z protein [Aurora borealis virus 3]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG5236 super family cl28715
Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];
51-107 8.37e-03

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];


The actual alignment was detected with superfamily member COG5236:

Pssm-ID: 227561 [Multi-domain]  Cd Length: 493  Bit Score: 34.61  E-value: 8.37e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2290906979  51 CQGCGKNASLV-ILPCKNKVCMECALKMR-------CPVC---YEACLWCENPDGSLTSLALVnKERN 107
Cdd:COG5236    64 CQICAGSTTYSaRYPCGHQICHACAVRLRalymqkgCPLCrteTEAVVFTASSPADITDRRQW-KGRE 130
 
Name Accession Description Interval E-value
COG5236 COG5236
Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];
51-107 8.37e-03

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];


Pssm-ID: 227561 [Multi-domain]  Cd Length: 493  Bit Score: 34.61  E-value: 8.37e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2290906979  51 CQGCGKNASLV-ILPCKNKVCMECALKMR-------CPVC---YEACLWCENPDGSLTSLALVnKERN 107
Cdd:COG5236    64 CQICAGSTTYSaRYPCGHQICHACAVRLRalymqkgCPLCrteTEAVVFTASSPADITDRRQW-KGRE 130
 
Name Accession Description Interval E-value
COG5236 COG5236
Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];
51-107 8.37e-03

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];


Pssm-ID: 227561 [Multi-domain]  Cd Length: 493  Bit Score: 34.61  E-value: 8.37e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2290906979  51 CQGCGKNASLV-ILPCKNKVCMECALKMR-------CPVC---YEACLWCENPDGSLTSLALVnKERN 107
Cdd:COG5236    64 CQICAGSTTYSaRYPCGHQICHACAVRLRalymqkgCPLCrteTEAVVFTASSPADITDRRQW-KGRE 130
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH