NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446162725|ref|WP_000240580|]
View 

MULTISPECIES: intracellular adhesion protein IcaD [Bacteria]

Protein Classification

PIA_icaD family protein( domain architecture ID 10024212)

PIA_icaD family protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PIA_icaD TIGR03932
intracellular adhesion protein D; Members of this protein family are IcaD (intracellular ...
 12-99 7.01e-26

intracellular adhesion protein D; Members of this protein family are IcaD (intracellular adhesion protein D), which with catalytic subunit IcaA forms an N-acetylglucosaminyltransferase. In the absence of IcaC, this enzyme forms N-acetylglucosamine oligomers up to 20 in length. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


:

Pssm-ID: 188447  Cd Length: 88  Bit Score: 91.73  E-value: 7.01e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446162725   12 LKSSLNIVRETALIAISCVFWIYCLVVLLVYIGTIFEIHDESINTIRVALNIENTEILDIFETMGIFAIIIFVFFTISIL 91
Cdd:TIGR03932   1 VKSSLNIVRECVLFIISCTFWLYCLIVVIVYIGTLFLQDFESVQTIRIALNVENREIVDIFETLLAFVIIIFVFFTSSLI 80


                  ....*...
gi 446162725   92 IQKWQRGR 99
Cdd:TIGR03932  81 LQKWRQGR 88
 
Name Accession Description Interval E-value
PIA_icaD TIGR03932
intracellular adhesion protein D; Members of this protein family are IcaD (intracellular ...
 12-99 7.01e-26

intracellular adhesion protein D; Members of this protein family are IcaD (intracellular adhesion protein D), which with catalytic subunit IcaA forms an N-acetylglucosaminyltransferase. In the absence of IcaC, this enzyme forms N-acetylglucosamine oligomers up to 20 in length. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 188447  Cd Length: 88  Bit Score: 91.73  E-value: 7.01e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446162725   12 LKSSLNIVRETALIAISCVFWIYCLVVLLVYIGTIFEIHDESINTIRVALNIENTEILDIFETMGIFAIIIFVFFTISIL 91
Cdd:TIGR03932   1 VKSSLNIVRECVLFIISCTFWLYCLIVVIVYIGTLFLQDFESVQTIRIALNVENREIVDIFETLLAFVIIIFVFFTSSLI 80


                  ....*...
gi 446162725   92 IQKWQRGR 99
Cdd:TIGR03932  81 LQKWRQGR 88
 
Name Accession Description Interval E-value
PIA_icaD TIGR03932
intracellular adhesion protein D; Members of this protein family are IcaD (intracellular ...
 12-99 7.01e-26

intracellular adhesion protein D; Members of this protein family are IcaD (intracellular adhesion protein D), which with catalytic subunit IcaA forms an N-acetylglucosaminyltransferase. In the absence of IcaC, this enzyme forms N-acetylglucosamine oligomers up to 20 in length. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 188447  Cd Length: 88  Bit Score: 91.73  E-value: 7.01e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446162725   12 LKSSLNIVRETALIAISCVFWIYCLVVLLVYIGTIFEIHDESINTIRVALNIENTEILDIFETMGIFAIIIFVFFTISIL 91
Cdd:TIGR03932   1 VKSSLNIVRECVLFIISCTFWLYCLIVVIVYIGTLFLQDFESVQTIRIALNVENREIVDIFETLLAFVIIIFVFFTSSLI 80


                  ....*...
gi 446162725   92 IQKWQRGR 99
Cdd:TIGR03932  81 LQKWRQGR 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH