|
Name |
Accession |
Description |
Interval |
E-value |
| PrgP |
NF041283 |
ParA superfamily DNA segregation protein PrgP; |
14-311 |
2.51e-130 |
|
ParA superfamily DNA segregation protein PrgP;
Pssm-ID: 469180 [Multi-domain] Cd Length: 297 Bit Score: 372.94 E-value: 2.51e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 14 LGKVVMLTGRKGGIGKTTDNDLLAIVSSQLFEKDVLLIDYDQQRNTTSNIGSTYQITSFDRSMSAAIKKGDWVSGITQVS 93
Cdd:NF041283 1 MGYVIVLANQKGGVGKTTDTVMEAVVASSVFNKKVLVIDTDLQGNATQFLSKTFNVPNFPQSFMKCVEDGDLEKGIVHLT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 94 PHLYIMAGSPGSEELNEYLSEKYPDRRKRSLAFIKPLEELRKNFDYIFIDCPPSTDNVVRAFLTAADYIIAMQELKRYAM 173
Cdd:NF041283 81 PNLDLIAGDYDTRELGDFLADKFKSEYDRTFYLKKLLDKIKDDYDFIFIDVPPSTDIKVDNAMVAADYVIVIQETQQFAF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 174 EGTEDFINKVLVPIVTNF-EESHLQIIGILPVLFSVRRSSQHANYQKTIDKYGESNIFKSIVKGSDRLEMYGENGIQLND 252
Cdd:NF041283 161 EGSKKLILTYLQTLVDDFgDEINVQVAGILPVLLQARRPLQQKIVDETIEYFGKDNVFNNIIKNHARLEWYGEQGIQFED 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 446351584 253 YVDRRWWAIFADIFTELEERIEYYEQHGDIEGFDYTPKYADSmaNHILPLGKEIKLNGI 311
Cdd:NF041283 241 YHDRRMFALFADIFCELEERIKSFEKTGDVENFTYTHQYINQ--NKLTPKGKEITINGF 297
|
|
| ParA |
COG1192 |
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ... |
16-274 |
9.83e-33 |
|
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];
Pssm-ID: 440805 [Multi-domain] Cd Length: 253 Bit Score: 121.50 E-value: 9.83e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 16 KVVMLTGRKGGIGKTTdndlLAI-VSSQLFE--KDVLLIDYDQQRNTTSNIGstYQITSFDRSMSAAIKKGDWVSGITQV 92
Cdd:COG1192 2 KVIAVANQKGGVGKTT----TAVnLAAALARrgKRVLLIDLDPQGNLTSGLG--LDPDDLDPTLYDLLLDDAPLEDAIVP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 93 S--PHLYIMAGSPGSEELNEYLSekypDRRKRSLAFIKPLEELRKNFDYIFIDCPPSTDNVVRAFLTAADYIIAMQELKR 170
Cdd:COG1192 76 TeiPGLDLIPANIDLAGAEIELV----SRPGRELRLKRALAPLADDYDYILIDCPPSLGLLTLNALAAADSVLIPVQPEY 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 171 YAMEGTEDFINKV-LVPIVTNfeeSHLQIIGILPVLFSvRRSSQHANYQKTIDKYGESNIFKSIVKGSDRLEMYGENGIQ 249
Cdd:COG1192 152 LSLEGLAQLLETIeEVREDLN---PKLEILGILLTMVD-PRTRLSREVLEELREEFGDKVLDTVIPRSVALAEAPSAGKP 227
|
250 260
....*....|....*....|....*..
gi 446351584 250 LNDYvDRRWWA--IFADIFTELEERIE 274
Cdd:COG1192 228 VFEY-DPKSKGakAYRALAEELLERLE 253
|
|
| AAA_31 |
pfam13614 |
AAA domain; This family includes a wide variety of AAA domains including some that have lost ... |
15-183 |
9.43e-20 |
|
AAA domain; This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.
Pssm-ID: 433350 [Multi-domain] Cd Length: 177 Bit Score: 84.56 E-value: 9.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 15 GKVVMLTGRKGGIGKTTdndlLAI-VSSQLFEKD--VLLIDYDQQRNTTSNIG--------STYQITSFDRSMSAAIKKg 83
Cdd:pfam13614 1 GKVIAIANQKGGVGKTT----TSVnLAAALAKKGkkVLLIDLDPQGNATSGLGidknnvekTIYELLIGECNIEEAIIK- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 84 dwvsgitQVSPHLYIMagsPGSEEL----NEYLSEKypdrrKRSLAFIKPLEELRKNFDYIFIDCPPSTDNVVRAFLTAA 159
Cdd:pfam13614 76 -------TVIENLDLI---PSNIDLagaeIELIGIE-----NRENILKEALEPVKDNYDYIIIDCPPSLGLLTINALTAS 140
|
170 180
....*....|....*....|....
gi 446351584 160 DYIIAMQELKRYAMEGTEDFINKV 183
Cdd:pfam13614 141 DSVLIPVQCEYYALEGLSQLLNTI 164
|
|
| ParAB_family |
cd02042 |
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved ... |
16-221 |
4.89e-13 |
|
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.
Pssm-ID: 349760 [Multi-domain] Cd Length: 130 Bit Score: 64.87 E-value: 4.89e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 16 KVVMLTGRKGGIGKTTdndlLAI---VSSQLFEKDVLLIDYDQQRNTTSNIgstyqitsfdrsmsaaikkgdwvsgitqv 92
Cdd:cd02042 1 KVIAVANQKGGVGKTT----LAVnlaAALALRGKRVLLIDLDPQGSLTSWL----------------------------- 47
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 93 sphlyimagspgseelneylsekypdrrkrslafikpleelrknFDYIFIDCPPSTDNVVRAFLTAADYIIAMQELKRYA 172
Cdd:cd02042 48 --------------------------------------------YDYILIDTPPSLGLLTRNALAAADLVLIPVQPSPFD 83
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 446351584 173 MEGTEDFINkvLVPIVTNFEESHLQIIGILPVLFSvRRSSQHANYQKTI 221
Cdd:cd02042 84 LDGLAKLLD--TLEELKKQLNPPLLILGILLTRVD-PRTKLAREVLEEL 129
|
|
| ParA_partition |
NF041546 |
ParA family partition ATPase; |
24-163 |
5.90e-07 |
|
ParA family partition ATPase;
Pssm-ID: 469431 [Multi-domain] Cd Length: 202 Bit Score: 49.09 E-value: 5.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 24 KGGIGKTTdndlLAI---VSSQLFEKDVLLIDYDQQrnttsniGSTyqitsfdrSMSAAIKKGDW---VSGITQVSPHly 97
Cdd:NF041546 8 KGGVGKTT----LAThlaAALARRGYRVLLVDADPQ-------GSA--------LDWAAAREDERpfpVVGLARPTLH-- 66
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446351584 98 imagspgseelneylsekypdrrkrslafiKPLEELRKNFDYIFIDCPPSTDNVVRAFLTAADYII 163
Cdd:NF041546 67 ------------------------------RELPSLARDYDFVVIDGPPRAEDLARSAIKAADLVL 102
|
|
| eps_fam |
TIGR01007 |
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide ... |
4-146 |
8.10e-06 |
|
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273392 [Multi-domain] Cd Length: 204 Bit Score: 45.89 E-value: 8.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 4 LRTAFKTSDKLGKVVMLTGRKGGIGKTTDNDLLAIVSSQLFEKdVLLIDYDQqRNTTSNIgsTYQITSFDRSMSAAIK-K 82
Cdd:TIGR01007 6 IRTNIQFSGAEIKVLLITSVKPGEGKSTTSANIAIAFAQAGYK-TLLIDGDM-RNSVMSG--TFKSQNKITGLTNFLSgT 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446351584 83 GDWVSGITQVS-PHLYIMAGSPGSEELNEYLSEKYpdrrkrslaFIKPLEELRKNFDYIFIDCPP 146
Cdd:TIGR01007 82 TDLSDAICDTNiENLDVITAGPVPPNPTELLQSSN---------FKTLIETLRKRFDYIIIDTPP 137
|
|
| PRK13869 |
PRK13869 |
plasmid-partitioning protein RepA; Provisional |
16-163 |
4.55e-05 |
|
plasmid-partitioning protein RepA; Provisional
Pssm-ID: 139929 [Multi-domain] Cd Length: 405 Bit Score: 44.67 E-value: 4.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 16 KVVMLTGRKGGIGKTTDNDLLA-IVSSQLFEkdVLLIDYDQQRNTTSNIGSTYQI-TSFDRSMSAAIKKGDWVSGITQVS 93
Cdd:PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAqYLALQGYR--VLAVDLDPQASLSALLGVLPETdVGANETLYAAIRYDDTRRPLRDVI 199
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446351584 94 PHLYI--MAGSPGSEELNEY---LSEKYPDRRKRSLAFI----KPLEELRKNFDYIFIDCPPSTDNVVRAFLTAADYII 163
Cdd:PRK13869 200 RPTYFdgLHLVPGNLELMEFehtTPKALSDKGTRDGLFFtrvaQAFDEVADDYDVVVIDCPPQLGFLTLSGLCAATSMV 278
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PrgP |
NF041283 |
ParA superfamily DNA segregation protein PrgP; |
14-311 |
2.51e-130 |
|
ParA superfamily DNA segregation protein PrgP;
Pssm-ID: 469180 [Multi-domain] Cd Length: 297 Bit Score: 372.94 E-value: 2.51e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 14 LGKVVMLTGRKGGIGKTTDNDLLAIVSSQLFEKDVLLIDYDQQRNTTSNIGSTYQITSFDRSMSAAIKKGDWVSGITQVS 93
Cdd:NF041283 1 MGYVIVLANQKGGVGKTTDTVMEAVVASSVFNKKVLVIDTDLQGNATQFLSKTFNVPNFPQSFMKCVEDGDLEKGIVHLT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 94 PHLYIMAGSPGSEELNEYLSEKYPDRRKRSLAFIKPLEELRKNFDYIFIDCPPSTDNVVRAFLTAADYIIAMQELKRYAM 173
Cdd:NF041283 81 PNLDLIAGDYDTRELGDFLADKFKSEYDRTFYLKKLLDKIKDDYDFIFIDVPPSTDIKVDNAMVAADYVIVIQETQQFAF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 174 EGTEDFINKVLVPIVTNF-EESHLQIIGILPVLFSVRRSSQHANYQKTIDKYGESNIFKSIVKGSDRLEMYGENGIQLND 252
Cdd:NF041283 161 EGSKKLILTYLQTLVDDFgDEINVQVAGILPVLLQARRPLQQKIVDETIEYFGKDNVFNNIIKNHARLEWYGEQGIQFED 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 446351584 253 YVDRRWWAIFADIFTELEERIEYYEQHGDIEGFDYTPKYADSmaNHILPLGKEIKLNGI 311
Cdd:NF041283 241 YHDRRMFALFADIFCELEERIKSFEKTGDVENFTYTHQYINQ--NKLTPKGKEITINGF 297
|
|
| ParA |
COG1192 |
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ... |
16-274 |
9.83e-33 |
|
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];
Pssm-ID: 440805 [Multi-domain] Cd Length: 253 Bit Score: 121.50 E-value: 9.83e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 16 KVVMLTGRKGGIGKTTdndlLAI-VSSQLFE--KDVLLIDYDQQRNTTSNIGstYQITSFDRSMSAAIKKGDWVSGITQV 92
Cdd:COG1192 2 KVIAVANQKGGVGKTT----TAVnLAAALARrgKRVLLIDLDPQGNLTSGLG--LDPDDLDPTLYDLLLDDAPLEDAIVP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 93 S--PHLYIMAGSPGSEELNEYLSekypDRRKRSLAFIKPLEELRKNFDYIFIDCPPSTDNVVRAFLTAADYIIAMQELKR 170
Cdd:COG1192 76 TeiPGLDLIPANIDLAGAEIELV----SRPGRELRLKRALAPLADDYDYILIDCPPSLGLLTLNALAAADSVLIPVQPEY 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 171 YAMEGTEDFINKV-LVPIVTNfeeSHLQIIGILPVLFSvRRSSQHANYQKTIDKYGESNIFKSIVKGSDRLEMYGENGIQ 249
Cdd:COG1192 152 LSLEGLAQLLETIeEVREDLN---PKLEILGILLTMVD-PRTRLSREVLEELREEFGDKVLDTVIPRSVALAEAPSAGKP 227
|
250 260
....*....|....*....|....*..
gi 446351584 250 LNDYvDRRWWA--IFADIFTELEERIE 274
Cdd:COG1192 228 VFEY-DPKSKGakAYRALAEELLERLE 253
|
|
| AAA_31 |
pfam13614 |
AAA domain; This family includes a wide variety of AAA domains including some that have lost ... |
15-183 |
9.43e-20 |
|
AAA domain; This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.
Pssm-ID: 433350 [Multi-domain] Cd Length: 177 Bit Score: 84.56 E-value: 9.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 15 GKVVMLTGRKGGIGKTTdndlLAI-VSSQLFEKD--VLLIDYDQQRNTTSNIG--------STYQITSFDRSMSAAIKKg 83
Cdd:pfam13614 1 GKVIAIANQKGGVGKTT----TSVnLAAALAKKGkkVLLIDLDPQGNATSGLGidknnvekTIYELLIGECNIEEAIIK- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 84 dwvsgitQVSPHLYIMagsPGSEEL----NEYLSEKypdrrKRSLAFIKPLEELRKNFDYIFIDCPPSTDNVVRAFLTAA 159
Cdd:pfam13614 76 -------TVIENLDLI---PSNIDLagaeIELIGIE-----NRENILKEALEPVKDNYDYIIIDCPPSLGLLTINALTAS 140
|
170 180
....*....|....*....|....
gi 446351584 160 DYIIAMQELKRYAMEGTEDFINKV 183
Cdd:pfam13614 141 DSVLIPVQCEYYALEGLSQLLNTI 164
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
18-214 |
4.18e-17 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 78.93 E-value: 4.18e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 18 VMLTGRKGGIGKTTdndlLAIVSSQLF---EKDVLLIDYDQQRNTTSNIGSTYQITSFDRSMSAAIKKGDWVSGITQVSP 94
Cdd:pfam01656 1 IAIAGTKGGVGKTT----LAANLARALarrGLRVLLIDLDPQSNNSSVEGLEGDIAPALQALAEGLKGRVNLDPILLKEK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 95 -----HLYIMAGSPGSEELNEYLSEKYPDRRKRSLafikplEELRKNFDYIFIDCPPSTDNVVRAFLTAADYIIAMQELK 169
Cdd:pfam01656 77 sdeggLDLIPGNIDLEKFEKELLGPRKEERLREAL------EALKEDYDYVIIDGAPGLGELLRNALIAADYVIIPLEPE 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 446351584 170 RYAMEGTEDFInKVLVPIVTNFEESHLQIIGILPVLFSVRRSSQH 214
Cdd:pfam01656 151 VILVEDAKRLG-GVIAALVGGYALLGLKIIGVVLNKVDGDNHGKL 194
|
|
| CpaE |
COG4963 |
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular ... |
5-168 |
7.29e-14 |
|
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443989 [Multi-domain] Cd Length: 358 Bit Score: 71.30 E-value: 7.29e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 5 RTAFKTSDKLGKVVMLTGRKGGIGKTTdndL---LAIVSSQLFEKDVLLIDYDQQRNTTS---NIGSTYQITSFDRSMS- 77
Cdd:COG4963 92 RLLDPGAARRGRVIAVVGAKGGVGATT---LavnLAWALARESGRRVLLVDLDLQFGDVAlylDLEPRRGLADALRNPDr 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 78 ---AAIKkgdwvSGITQVSPHLYIMAGSPGSEELNEYLSEkypdrrkrslAFIKPLEELRKNFDYIFIDCPPSTDNVVRA 154
Cdd:COG4963 169 ldeTLLD-----RALTRHSSGLSVLAAPADLERAEEVSPE----------AVERLLDLLRRHFDYVVVDLPRGLNPWTLA 233
|
170
....*....|....*.
gi 446351584 155 FLTAAD--YIIAMQEL 168
Cdd:COG4963 234 ALEAADevVLVTEPDL 249
|
|
| ParAB_family |
cd02042 |
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved ... |
16-221 |
4.89e-13 |
|
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.
Pssm-ID: 349760 [Multi-domain] Cd Length: 130 Bit Score: 64.87 E-value: 4.89e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 16 KVVMLTGRKGGIGKTTdndlLAI---VSSQLFEKDVLLIDYDQQRNTTSNIgstyqitsfdrsmsaaikkgdwvsgitqv 92
Cdd:cd02042 1 KVIAVANQKGGVGKTT----LAVnlaAALALRGKRVLLIDLDPQGSLTSWL----------------------------- 47
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 93 sphlyimagspgseelneylsekypdrrkrslafikpleelrknFDYIFIDCPPSTDNVVRAFLTAADYIIAMQELKRYA 172
Cdd:cd02042 48 --------------------------------------------YDYILIDTPPSLGLLTRNALAAADLVLIPVQPSPFD 83
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 446351584 173 MEGTEDFINkvLVPIVTNFEESHLQIIGILPVLFSvRRSSQHANYQKTI 221
Cdd:cd02042 84 LDGLAKLLD--TLEELKKQLNPPLLILGILLTRVD-PRTKLAREVLEEL 129
|
|
| BY-kinase |
cd05387 |
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ... |
3-163 |
1.62e-10 |
|
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.
Pssm-ID: 349772 [Multi-domain] Cd Length: 190 Bit Score: 59.51 E-value: 1.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 3 NLRTA--FKTSDKLGKVVMLTGRKGGIGKTTDNDLLAIVSSQLfEKDVLLIDYDQQRnttSNIGSTYQITSfdrsmsaai 80
Cdd:cd05387 5 TLRTNllFAGSDAGPKVIAVTSASPGEGKSTVAANLAVALAQS-GKRVLLIDADLRR---PSLHRLLGLPN--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 81 KKG--DWVSG---ITQV-----SPHLYIMAGSPGSEELNEYLSEKypdrrkrslAFIKPLEELRKNFDYIFIDCPP---S 147
Cdd:cd05387 72 EPGlsEVLSGqasLEDViqstnIPNLDVLPAGTVPPNPSELLSSP---------RFAELLEELKEQYDYVIIDTPPvlaV 142
|
170
....*....|....*.
gi 446351584 148 TDNVVraFLTAADYII 163
Cdd:cd05387 143 ADALI--LAPLVDGVL 156
|
|
| CpaE-like |
cd03111 |
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE ... |
16-190 |
4.15e-10 |
|
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Pssm-ID: 349765 [Multi-domain] Cd Length: 235 Bit Score: 58.83 E-value: 4.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 16 KVVMLTGRKGGIGKTTDNDLLAIVSSQLFEKDVLLIDYDQQRNTTS---NIGSTYQ----ITSFDRSMSAAIKkgdwvSG 88
Cdd:cd03111 1 RVVAVVGAKGGVGASTLAVNLAQELAQRAKDKVLLIDLDLPFGDLGlylNLRPDYDladvIQNLDRLDRTLLD-----SA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 89 ITQVSPHLYIMAGSPGSEELneylsekypdRRKRSLAFIKPLEELRKNFDYIFIDCPPSTDNVVRAFLTAAD--YIIAMQ 166
Cdd:cd03111 76 VTRHSSGLSLLPAPQELEDL----------EALGAEQVDKLLQVLRAFYDHIIVDLGHFLDEVTLAVLEAADeiLLVTQQ 145
|
170 180 190
....*....|....*....|....*....|
gi 446351584 167 EL------KRYAMEGTEDFINKVLVPIVTN 190
Cdd:cd03111 146 DLpslrnaRRLLDSLRELEGSSDRLRLVLN 175
|
|
| FlhG-like |
cd02038 |
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) ... |
16-163 |
4.64e-10 |
|
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.
Pssm-ID: 349758 [Multi-domain] Cd Length: 230 Bit Score: 58.73 E-value: 4.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 16 KVVMLTGRKGGIGKT--TDNdlLAIVSSQLfEKDVLLIDYDqqrnttsnIGstyqITSFDRSMSAAIKK--GDWVSG--- 88
Cdd:cd02038 1 RIIAVTSGKGGVGKTnvSAN--LALALSKL-GKRVLLLDAD--------LG----LANLDILLGLAPKKtlGDVLKGrvs 65
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446351584 89 ----ITQVSPHLYIMAGSPGSEELNEyLSekyPDRRKRslaFIKPLEELRKNFDYIFIDCPPSTDNVVRAFLTAADYII 163
Cdd:cd02038 66 lediIVEGPEGLDIIPGGSGMEELAN-LD---PEQKAK---LIEELSSLESNYDYLLIDTGAGISRNVLDFLLAADEVI 137
|
|
| Mrp |
COG0489 |
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ... |
4-188 |
6.55e-09 |
|
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440255 [Multi-domain] Cd Length: 289 Bit Score: 55.96 E-value: 6.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 4 LRTAFKTSDKLGKVVMLTGRKGGIGKTTdndL---LAIVSSQLfEKDVLLIDYDQQR-------NTTSNIGSTyQITSFD 73
Cdd:COG0489 81 LLLLLLLLRLLLEVIAVTSGKGGEGKST---VaanLALALAQS-GKRVLLIDADLRGpslhrmlGLENRPGLS-DVLAGE 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 74 RSMSAAIKKGDwvsgitqvSPHLYIMAGSPGSEELNEYLSekypdrrkrSLAFIKPLEELRKNFDYIFIDCPPSTDNV-V 152
Cdd:COG0489 156 ASLEDVIQPTE--------VEGLDVLPAGPLPPNPSELLA---------SKRLKQLLEELRGRYDYVIIDTPPGLGVAdA 218
|
170 180 190
....*....|....*....|....*....|....*....
gi 446351584 153 RAFLTAAD---YIIAMQELKRYAMEGTEDFINKVLVPIV 188
Cdd:COG0489 219 TLLASLVDgvlLVVRPGKTALDDVRKALEMLEKAGVPVL 257
|
|
| FlhG |
COG0455 |
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell ... |
46-163 |
1.75e-08 |
|
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell division, chromosome partitioning, Cell motility];
Pssm-ID: 440223 [Multi-domain] Cd Length: 230 Bit Score: 54.13 E-value: 1.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 46 KDVLLIDYDQQRnttSNIGSTYQITSfDRSMSAAIKKGDWVSGITQVSPH-LYIMAGSPGSEELNEYLSEKYpdrrkrsl 124
Cdd:COG0455 15 KRVLLVDADLGL---ANLDVLLGLEP-KATLADVLAGEADLEDAIVQGPGgLDVLPGGSGPAELAELDPEER-------- 82
|
90 100 110
....*....|....*....|....*....|....*....
gi 446351584 125 aFIKPLEELRKNFDYIFIDCPPSTDNVVRAFLTAADYII 163
Cdd:COG0455 83 -LIRVLEELERFYDVVLVDTGAGISDSVLLFLAAADEVV 120
|
|
| ParA_partition |
NF041546 |
ParA family partition ATPase; |
24-163 |
5.90e-07 |
|
ParA family partition ATPase;
Pssm-ID: 469431 [Multi-domain] Cd Length: 202 Bit Score: 49.09 E-value: 5.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 24 KGGIGKTTdndlLAI---VSSQLFEKDVLLIDYDQQrnttsniGSTyqitsfdrSMSAAIKKGDW---VSGITQVSPHly 97
Cdd:NF041546 8 KGGVGKTT----LAThlaAALARRGYRVLLVDADPQ-------GSA--------LDWAAAREDERpfpVVGLARPTLH-- 66
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446351584 98 imagspgseelneylsekypdrrkrslafiKPLEELRKNFDYIFIDCPPSTDNVVRAFLTAADYII 163
Cdd:NF041546 67 ------------------------------RELPSLARDYDFVVIDGPPRAEDLARSAIKAADLVL 102
|
|
| eps_fam |
TIGR01007 |
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide ... |
4-146 |
8.10e-06 |
|
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273392 [Multi-domain] Cd Length: 204 Bit Score: 45.89 E-value: 8.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 4 LRTAFKTSDKLGKVVMLTGRKGGIGKTTDNDLLAIVSSQLFEKdVLLIDYDQqRNTTSNIgsTYQITSFDRSMSAAIK-K 82
Cdd:TIGR01007 6 IRTNIQFSGAEIKVLLITSVKPGEGKSTTSANIAIAFAQAGYK-TLLIDGDM-RNSVMSG--TFKSQNKITGLTNFLSgT 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446351584 83 GDWVSGITQVS-PHLYIMAGSPGSEELNEYLSEKYpdrrkrslaFIKPLEELRKNFDYIFIDCPP 146
Cdd:TIGR01007 82 TDLSDAICDTNiENLDVITAGPVPPNPTELLQSSN---------FKTLIETLRKRFDYIIIDTPP 137
|
|
| PRK13869 |
PRK13869 |
plasmid-partitioning protein RepA; Provisional |
16-163 |
4.55e-05 |
|
plasmid-partitioning protein RepA; Provisional
Pssm-ID: 139929 [Multi-domain] Cd Length: 405 Bit Score: 44.67 E-value: 4.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 16 KVVMLTGRKGGIGKTTDNDLLA-IVSSQLFEkdVLLIDYDQQRNTTSNIGSTYQI-TSFDRSMSAAIKKGDWVSGITQVS 93
Cdd:PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAqYLALQGYR--VLAVDLDPQASLSALLGVLPETdVGANETLYAAIRYDDTRRPLRDVI 199
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446351584 94 PHLYI--MAGSPGSEELNEY---LSEKYPDRRKRSLAFI----KPLEELRKNFDYIFIDCPPSTDNVVRAFLTAADYII 163
Cdd:PRK13869 200 RPTYFdgLHLVPGNLELMEFehtTPKALSDKGTRDGLFFtrvaQAFDEVADDYDVVVIDCPPQLGFLTLSGLCAATSMV 278
|
|
| CBP_BcsQ |
pfam06564 |
Cellulose biosynthesis protein BcsQ; This is a family of bacterial proteins involved in ... |
16-164 |
3.18e-04 |
|
Cellulose biosynthesis protein BcsQ; This is a family of bacterial proteins involved in cellulose biosynthesis. (Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation)). A second component of the extracellular matrix of the multicellular morphotype (rdar) of Salmonella typhimurium and Escherichia coli is cellulose. The family does contain a P-loop sequence motif suggesting a nucleotide binding function, but this has not been confirmed.
Pssm-ID: 429004 [Multi-domain] Cd Length: 234 Bit Score: 41.59 E-value: 3.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 16 KVVMLTGRKGGIGKTTDNDLLAIvSSQLFEKDVLLIDYdqqrnTTSNIGSTYQITSFDRS---MSAAIKKGDWVSGITQV 92
Cdd:pfam06564 2 KILALQGVRGGVGTTSILAALAW-ALQRLGERVLLIDL-----SPDNLLRLHFNVPFEHRqgwARAELDGADWRDAALEY 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446351584 93 SPHLYIMA-GSPGSEElneylSEKYPDRRKRSLAFIKPLEELRKNFDYIFIDCPPSTDNVVRAFLTAADYIIA 164
Cdd:pfam06564 76 TPGLDLLPfGRLSVEE-----QENLQQLQPDPGAWCRRLQQLKGRYDWVLFDLPAGPSPLTRQLLSLADLSLL 143
|
|
| partition_RepA |
TIGR03453 |
plasmid partitioning protein RepA; Members of this family are the RepA (or ParA) protein ... |
11-147 |
1.00e-03 |
|
plasmid partitioning protein RepA; Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 274585 [Multi-domain] Cd Length: 387 Bit Score: 40.35 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446351584 11 SDKLgKVVMLTGRKGGIGKTTDNDLLAivssQLFEKD---VLLIDYDQQRNTTSNIGstYQiTSFD----RSMSAAIKKG 83
Cdd:TIGR03453 101 GEHL-QVIAVTNFKGGSGKTTTAAHLA----QYLALRgyrVLAIDLDPQASLSALFG--YQ-PEFDvgenETLYGAIRYD 172
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446351584 84 DWVSGITQVSPHLYImAG---SPGSEELNEY-------LSEKYPDRRKRSLAFIKPLEELRKNFDYIFIDCPPS 147
Cdd:TIGR03453 173 DERRPISEIIRKTYF-PGldlVPGNLELMEFehetpraLSRGQGGDTIFFARVGEALAEVEDDYDVVVIDCPPQ 245
|
|
| MinD |
COG2894 |
Septum site-determining ATPase MinD [Cell cycle control, cell division, chromosome ... |
130-145 |
3.59e-03 |
|
Septum site-determining ATPase MinD [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442139 [Multi-domain] Cd Length: 258 Bit Score: 38.50 E-value: 3.59e-03
|
| |
